Construct: ORF ccsbBroadEn_12840

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003574.1_s300c1, BRDN0000390286
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CAPS2 (84698)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84698 CAPS2 calcyphosine 2 XM_005269194.3 100% 100%
2 human 84698 CAPS2 calcyphosine 2 XM_017020039.1 83.6% 83.7% 879_1050delinsT
3 human 84698 CAPS2 calcyphosine 2 NM_001286548.3 76.6% 76.7% 215_310del;975_1146delinsT
4 human 84698 CAPS2 calcyphosine 2 NM_001355030.2 76.6% 76.7% 215_310del;975_1146delinsT
5 human 84698 CAPS2 calcyphosine 2 NM_001355031.2 76.6% 76.7% 215_310del;975_1146delinsT
6 human 84698 CAPS2 calcyphosine 2 NM_001355032.2 76.6% 76.7% 215_310del;975_1146delinsT
7 human 84698 CAPS2 calcyphosine 2 NM_001355033.2 76.6% 76.7% 215_310del;975_1146delinsT
8 human 84698 CAPS2 calcyphosine 2 XM_017020036.1 76.6% 76.7% 215_310del;975_1146delinsT
9 human 84698 CAPS2 calcyphosine 2 NM_001355027.2 62.2% 62.2% 1_438del;653_748del
10 human 84698 CAPS2 calcyphosine 2 NM_001286547.3 61.6% 61.6% 1_546del
11 human 84698 CAPS2 calcyphosine 2 NM_001355026.2 61.3% 61.4% 1_381del;1260_1431delinsT
12 human 84698 CAPS2 calcyphosine 2 XM_005269192.1 57.6% 57.6% 1_378del;593_688del;1353_1524delinsT
13 human 84698 CAPS2 calcyphosine 2 XM_011538888.1 57.4% 57.5% 1_381del;596_691del;1356_1527delinsT
14 human 84698 CAPS2 calcyphosine 2 NM_001355025.2 55.4% 55.4% 1_438del;653_748del;1413_1584delinsT
15 human 84698 CAPS2 calcyphosine 2 XM_011538887.2 53.7% 53.8% 1_582del;1461_1632delinsT
16 human 84698 CAPS2 calcyphosine 2 NM_032606.5 52.6% 52.6% 1_696del;911_1006del
17 human 84698 CAPS2 calcyphosine 2 NM_001355024.2 51.8% 51.9% 1_546del;761_856del;1521_1692delinsT
18 human 84698 CAPS2 calcyphosine 2 XM_024449226.1 51.7% 51.7% 1_552del;767_862del;1527_1698delinsT
19 human 84698 CAPS2 calcyphosine 2 NM_001355023.2 51.3% 51.4% 1_660del;1539_1710delinsT
20 human 84698 CAPS2 calcyphosine 2 XM_011538886.2 50.8% 50.8% 1_582del;797_892del;1557_1728delinsT
21 human 84698 CAPS2 calcyphosine 2 XM_006719649.2 50.2% 50.3% 1_696del;1575_1746delinsT
22 human 84698 CAPS2 calcyphosine 2 XM_011538878.1 48.6% 48.6% 1_660del;875_970del;1635_1806delinsT
23 human 84698 CAPS2 calcyphosine 2 XM_011538889.3 48.6% 48.6% 1_660del;875_970del;1635_1806delinsT
24 human 84698 CAPS2 calcyphosine 2 XM_006719648.2 47.6% 47.7% 1_696del;911_1006del;1671_1842delinsT
25 human 84698 CAPS2 calcyphosine 2 XM_011538890.1 30.3% 30.1% (many diffs)
26 human 84698 CAPS2 calcyphosine 2 XR_944789.1 24.4% 1_893del;1108_1203del;1868_3585delinsT
27 human 84698 CAPS2 calcyphosine 2 NR_149156.2 16.2% 1_412del;552_553ins169;1122_4207delinsT
28 human 84698 CAPS2 calcyphosine 2 NR_149155.2 16% 1_440del;580_581ins169;1150_4235delinsT
29 human 84698 CAPS2 calcyphosine 2 NR_149161.2 15.9% 1_486del;626_627ins169;1196_4281delinsT
30 human 84698 CAPS2 calcyphosine 2 NR_149159.2 14.8% 1_816del;956_957ins169;1526_4611delinsT
31 human 84698 CAPS2 calcyphosine 2 NR_149157.2 14.7% 1_844del;984_985ins169;1554_4639delinsT
32 human 84698 CAPS2 calcyphosine 2 NR_149160.2 14.6% 1_876del;1016_1017ins169;1586_4671delinsT
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
945
ORF length:
879
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAT AGACCACTTA TCTAGGGCTG TCATCAGTGA TCCAGAGCAA AATTTAGCCA
121TTGAGCAAAA AGAAAGTGAT CATATCCTTC CAGATTCAAA GATGACACCT CTTCGATTTA
181GAAAAAGAAC ACTACATGAA ACAAAGATAA GAACTCATTC TACATTAACT GAAAATGTGC
241TTTCTCATAA ATTACAGTTT GATGGTAGGA TCGTATCACG AACAAATGTG CTTCCTTTTA
301TTCAAAAAAG CATTTATAGT CATCAGTGTG GACGAAGAAA AGGAAAACAA TACCGACTTG
361GTGATTTTTA TGTTGGTGCA ACCTTGACAT TTTTGAGTTC TGATCATCTC AGCCTTCCAG
421AAAGCATCAA AGAAAACACA TTACTTAAAC TCCGAATCAC AAATATTGAT CAAATAGCTT
481TGGATTCTCT CAAAACTGCT TCTATGGAAC AGGAGGATGA TATAATCATT CAAGAAACCA
541ATGATAGGCT GGTCTTCAAA GCAATTCAAG ATGTGCTAAA AGAAAAACTA CATAAAAGAG
601GTGTTCGTAT TTTGACTGGA TTGGGAAAAT ATTTTCAACA GTTGGACAAG GAAGGAAATG
661GACTTTTAGA TAAGGCAGAT TTTAAGCAAG CTCTAAAAGT GTTTCACTTA GAAGTGTCTG
721AAAAGGATTT TGAGTCTGCA TGGCTAATTC TGAATGACAA TGGCAATGGC AAGGTTGATT
781ATGGAGAATT CAAACGTGGT ATTATTGGTG AAATGAATGA ATACAGGAAA TCATATGTTC
841GAAAGGCCTT TATGAAACTG GATTTCAACA AAAGTGGCAG TGTGCCTATT ATAAACATAA
901GAAAATGTTA CTGTGCAAAG AAGCATTCTC AAGTAATTTC AGGTTGCCCA ACTTTCTTGT
961ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)