Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12840
- Subject:
- NR_149159.2
- Aligned Length:
- 4780
- Identities:
- 709
- Gaps:
- 4070
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGACCTGCAGAGTGAAGAAAGCTGGTAATAGATGTCTGACAAACTAAAGAAAGACTTGTGTTACGATGCAAAGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATTGTTCCTGGGTGTGTCTGTGAGAGTATTGCCAAAGGAGAGCAGTGAACTGGGAAAAGCAGACCCACCTCAAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTGGGTGGGCAACATCCAATCGGCTGCCAGCTAGAATAAACCAGGCAGGAGAAGATGGAAGAGCCGACTTGCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AATCTTCCAGCCTTCATCTTTCTCGTGTGCTGGATGCTTCCTGCCCTCAAACATCAGACTCCAGGTTCTTCGTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTTTGGACTCTCGGATTTACATCAGTGGTTTACCAGGTGCTCTCAGGCCTTCAGCCACACACTGAAGGCTGAAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGTCGGCTTCCCGACTTTTGAGATTTTGAAACTTGGACTGAGCTACTGCTGGCTTCCTTGCTTCTCAACTTACA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GATGGGACTTCACCTATAGATCATGATCAGAACATAATACCTGAAAATTTGCCAGCACCAACAGACAAATGTAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ACTAAAATATCAGCAATGTAAAACTGAAATTAAAGAGGGCTATAAGCAGTATAGTCAGAGAAATGCAGAAAATA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAAAATCAAATGTTACACATAAACAGTCTCCAAGAAACAAGATAGATGAAAAGTGTGTGCAAGATGAAGAAGCC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AACACAGATGACCTTACGACTCTGGATAGGAAAGCCATCTTACAGCAAGGTTATGCAGACAACTCTTGCGATAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ACAACAGAGGGCAAGAAAATTGGATGCAGAAATTGTGGCTGCAGAGAAGAAGAAACAGATTGTTGCAGAGCAAG 814
Query 1 --ATGATAGACCACTTATCTAGGGCTGTCATCAGTGATCCAGAGCAAAATTTAGCCATTGAGCAAAAAGAAAGT 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGATGATAGACCACTTATCTAGGGCTGTCATCAGTGATCCAGAGCAAAATTTAGCCATTGAGCAAAAAGAAAGT 888
Query 73 GATCATATCCTTCCAGATTCAAAGATGACACCTCTTCGATTTAGAAAAAGAACACTACATGAAACAAAGATAAG 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GATCATATCCTTCCAGATTCAAAGATGACACCTCTTCGATTTAGAAAAAGAACACTACATGAAACAAA------ 956
Query 147 AACTCATTCTACATTAACTGAAAATGTGCTTTCTCATAAATTACAGTTTGATGGTAGGATCGTATCACGAACAA 220
Sbjct 957 -------------------------------------------------------------------------- 956
Query 221 ATGTGCTTCCTTTTATTCAAAAAAGCATTTATAGTCATCAGTGTGGACGAAGAAAAGGAAAACAATACCGACTT 294
Sbjct 957 -------------------------------------------------------------------------- 956
Query 295 GGTGATTTTTATGTTGGTGCAACCTTGACATTTTTGAGTTCTGATCATCTCAGCCTTCCAGAAAGCATCAAAGA 368
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ---------------GGTGCAACCTTGACATTTTTGAGTTCTGATCATCTCAGCCTTCCAGAAAGCATCAAAGA 1015
Query 369 AAACACATTACTTAAACTCCGAATCACAAATATTGATCAAATAGCTTTGGATTCTCTCAAAACTGCTTCTATGG 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AAACACATTACTTAAACTCCGAATCACAAATATTGATCAAATAGCTTTGGATTCTCTCAAAACTGCTTCTATGG 1089
Query 443 AACAGGAGGATGATATAATCATTCAAGAAACCAATGATAGGCTGGTCTTCAAAGCAATTCAAGATGTGCTAAAA 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 AACAGGAGGATGATATAATCATTCAAGAAACCAATGATAGGCTGGTCTTCAAAGCAATTCAAGATGTGCTAAAA 1163
Query 517 GAAAAACTACATAAAAGAGGTGTTCGTATTTTGACTGGATTGGGAAAATATTTTCAACAGTTGGACAAGGAAGG 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 GAAAAACTACATAAAAGAGGTGTTCGTATTTTGACTGGATTGGGAAAATATTTTCAACAGTTGGACAAGGAAGG 1237
Query 591 AAATGGACTTTTAGATAAGGCAGATTTTAAGCAAGCTCTAAAAGTGTTTCACTTAGAAGTGTCTGAAAAGGATT 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 AAATGGACTTTTAGATAAGGCAGATTTTAAGCAAGCTCTAAAAGTGTTTCACTTAGAAGTGTCTGAAAAGGATT 1311
Query 665 TTGAGTCTGCATGGCTAATTCTGAATGACAATGGCAATGGCAAGGTTGATTATGGAGAATTCAAACGTGGTATT 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TTGAGTCTGCATGGCTAATTCTGAATGACAATGGCAATGGCAAGGTTGATTATGGAGAATTCAAACGTGGTATT 1385
Query 739 ATTGGTGAAATGAATGAATACAGGAAATCATATGTTCGAAAGGCCTTTATGAAACTGGATTTCAACAAAAGTGG 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 ATTGGTGAAATGAATGAATACAGGAAATCATATGTTCGAAAGGCCTTTATGAAACTGGATTTCAACAAAAGTGG 1459
Query 813 CAGTGTGCCTATTATAAACATAAGAAAATGTTACTGTGCAAAGAAGCATTCTCAAGTAATTTCAGGT------- 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 1460 CAGTGTGCCTATTATAAACATAAGAAAATGTTACTGTGCAAAGAAGCATTCTCAAGTAATTTCAGGCCATTCAA 1533
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1534 CAGAGGAAGAAATCAAATCATCCTTTCTAGAAACATTAAAAGTTGCCTGCAGCAAGTCTGATGAAGTGTCATAT 1607
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1608 GGTGAATTTGAAGATTACTATGAAGGTTTAAGTATAGGAATAGTAGATGATGAAGACTTTGTTAACATCTTACG 1681
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1682 TACTCCATGGGGGATTTAGTCTTTAATAATACATATGTCATCAACACTAAGCATTTTATTGGAGAGATGATATC 1755
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1756 AATGTAAAGGATGATCAAACACTGGAATATATTTTCCTAGGACTTCCTTTATTCTGGTTTCTTGTTTGTTTGTT 1829
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1830 TTGTTTTGTTTTGTTTTCTCAAAAATGTTGAATTTGGAAAGAGAACTATCCAGAAAGATAGATGTAGGGGTGTG 1903
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1904 TTAGTGTTTGTGCATGTGTATGCCTGTTCACATGTCCTTACATTTGTAAAGATATCTTTTTGGTTTATTACTTA 1977
Query 880 -------------------------------------------------------------------------- 879
Sbjct 1978 TCTTGCGTATATTTTAGAGGTCATTTTTTATTAACTTCAGTAGGAAAGTTACATCTGCATCAAACAATATGGCA 2051
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2052 ACATCTATTTATTAACCAAGTTTCCTGTCCTTTCACATTGTTTTTTGCTACCTCTTCCTCAGAATATATTTGCC 2125
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2126 ACCATGGTCAATTTGATAAATTAGAATTGGGCCCAAAGCCAGTGAGATAATTCAATGTGTTTTTAACACATGAA 2199
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2200 AATATTAAAGGATATGCAAGAGAAATTTTTCAAGCAGTGTGATTATAGATGTTTTCTGTATATAGAATATTTCA 2273
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2274 AATGATGGAGGTTTACCCCATGATGCTCATTTAAATACTGACTTGTCTTTTAAATCTGTCTTCTAAATTATGTA 2347
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2348 CTGTTGTTGGTTAAATAGAGCACAATGTAGTTATTCTAATGCCCAGTTGTATTTGTTCTTTTATTCTGCTTTTT 2421
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2422 AACTGTAATCCTTTTTACCAGCATACGATTGTTATTGAGCAATATGAAAGGGAAATGTTCTTTATTAAAATCAA 2495
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2496 TACATTATCTTATTAAACAAAGATCCTAAAAGTATATTGTTGCATATATGAATCCAAGGAATAGTTCAGTAATT 2569
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2570 ATTGCCTAAAATGTGAAAGCATATTTTGTATCCTAAAATGAATGTATGATATTCTAAACATCTGTTTTAGTATA 2643
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2644 ACAAACAATTGAAACATTTCCTTCTAAATATATGTTATTTAATAGTTACATGTATTATAATCATTCTTTCTAAA 2717
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2718 TTCTTTGCTAGTCATTTCTTCCTGGGAATACAGAGAAAAGAGACAACTTTATGAGTTGTTTTCAACTTCATAAT 2791
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2792 TTTAAATTTTCTATGTTAATATAACATAAATTAGAAAAAATAAGTGATTCAAAATGAAAATATTTACTTTGTAG 2865
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2866 AATATGACTTTAGACATATCACTGTATCCATCTATACTTGGCAGCAACATGAGAAGTGTGATACATGTGAACCC 2939
Query 880 -------------------------------------------------------------------------- 879
Sbjct 2940 AACAAATTCAAAGTTGCACTTTTCAAGATGTGAGAAGGTACTAAAACTTAATACTAAAACATGAGAGGGAAAAT 3013
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3014 ATGTGTAAACCTCTAGTGCTATTTTCACTGGCTAAATTCTTTATTTCTTGATTTTTTTAAAAATTAGGTTATTA 3087
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3088 AAATTAAAACAATATGCTAGAAGACATTTTGGCAGAAATAAGTCTATAACACTATTTTTGTCACATATCTTTTT 3161
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3162 CTTGGAAAAATTTATCCAACTATAGACATCTTAAACCCTACAAATTGTTCTTGTTAAAAATGACTAATACTGGG 3235
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3236 GGTGCTCAATATGCATATAGTGTTTTTCATTGATAATTTTTATTTAGTTCTTAAGAAACCTGTTCTTAATGTTG 3309
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3310 GCATGTCACATTTTTCTGTTACTATAATCAGAAAATGTATAGTCTGTTATACTGTAAAAAAAAAAAAAAAGGGA 3383
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3384 AGCTACTTTTGGAATGTAACGTGTTAACATGACAGCATACTCTTAGTATTAATCTTAATCTTCCTAACATAAGC 3457
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3458 ATTCACATGTGGTTATTTGTAGGAAATAGCTCTATTTATGAGATTTTTTTTGGTGTATTTTGTTAGAATTGGTG 3531
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3532 ACACAGTAAATCATTCTGCTTTTGGATTTGCCTGACTGCCTGCATTCTTCTTTGATTTTGGTATAGTAAAATCT 3605
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3606 GTTATTTAGTGTTAAACTTAATAAAAGAGCATTTAAGAGAAGTGACATTTCAAACATCCACAACACAACTGACT 3679
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3680 TTTGAAATCCTATGCTTAATAGTCTTTGTAATTCTAAAAGACCTTTTGAAAATGTTAAAATATTAAATTATATG 3753
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3754 TTGTAATGCTGTTACATGAATTTTATAGTTATGTATATTTTATAGATCTCTATGTCTTTGTAAGTTACTTGCTT 3827
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3828 GTATGCTATATAATTGCTTTCTCAGTTAACCATACTGTTTATGGAATTGTATATACTGATTTTTCTGTTTTTAT 3901
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3902 ATTTTAAAAATAAAAGTTGAGAATTTTAAGGAAAAACATTTTATTAAAAAGACAAGGTATATTATATAGGAATT 3975
Query 880 -------------------------------------------------------------------------- 879
Sbjct 3976 TTAAGCTAACTTTTAATGGAAAGGACATACATATTTGCATGATGGAGCAATCACATTATAGTTAAACATGTATG 4049
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4050 TCCCTGTTTTAAATTTTATAGTATATAAATATATGTGCTAATGAACCAGCGACTCTGCATAGAGGCAGTCACTT 4123
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4124 AGAGTAATTAATAATCTTGATACAGCTGTAGATCATATCTTATTTTACATATTACTTTTGACTTCCAGTTTAAG 4197
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4198 TTGTTTGTTATCAAGTATTTCAGGAGAGAATTGTGTACATTAGGCTATGTTTACTGCAGATTATGTAACATGCT 4271
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4272 TTTATGAGATTATAGTTTGTAGTGCTTGCAAATATAAAACATGTACCCTGATAAACTATAATCACTACTAGGTT 4345
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4346 GACCAGCAAGGACAAACATGAAAATGCTTAAAAAAAAGAAAGCGCTTAAAACAAAGAAATAGAAGGTAATGGGC 4419
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4420 ATATATAAAATAAGCCAAGCAAGAGAAGAGCAAAGACAATCTGCAGGGTGGACATGGATGTATTCGTTTCTGAT 4493
Query 880 -------------------------------------------------------------------------- 879
Sbjct 4494 CATGAGAAGAGGCTCTTGTCATACATATCGTTCCATTTTTATTTTAAAGTTCTATAAACTTCTGAGGTAAACTG 4567
Query 880 -------------------------------------------- 879
Sbjct 4568 ATTTCTTGGATGTACTTAATAAAGAATAAATGTTTCATATTGGA 4611
