Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12850
- Subject:
- NR_040244.1
- Aligned Length:
- 3314
- Identities:
- 112
- Gaps:
- 3188
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTAGTTTGGAAAGAATAGAAGAAGGAATAGATGTTCACCAAGACCAGTAGTTCTCAAACAGGTCGAGTTGTTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTTGATGAATCCCAATGTGTCTACCGAGATGTTCCAGTTGAAGATCTAGTAATTAAAGGTCTCTTTACACCAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGCTAAGATCACGAATAAAGGAGCAGCTTTGGGTTTGCAGAGATTACACAGGAATGTATGTTTCTGGCAGGTCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTTGCCATCTTTGCAAGGAGTGTACATGGATGTCATCATTACAAAGGATGTGAGAGGAAAAATTTATTCAAGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCACTTATTAAAATTTCTTCCACTGTGCTGGATCCTTAATTTACATACTTGTTTGTAGATTCTGTTTCTCTTTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGTATTTTTTAAAAATTCATATGGAATATTTCTTATAATCCCAAGTTTATTGTTGTTATGGTCAACCACTAATT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACTTGAAGAATGTAATATAAAATTGTTTATCGTTTATGAAGTCTCTTAGTTACCTTTTGATACAGTTTGGCTGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GTACTCACCCAAGTCTCATCTTGAATTGTAGCTCTCATAATCCCCACGTGTTGTGGGAGGGACCTGATGGGAGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TAATTGAATTATATGGGTGGGTTTTCCTATGTTCTTGTGATAGTGAATAAGTCTCATGAGATCTGATGGTTTTA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TAAAGGGCAGTTCCCCTGCACATACTCTCTTGCTTGCTGCCATGTAAATGTGCCTTTGTTCCTCCTTCACCTTC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGGGATGATTATGGGGCCTCCTTAGCCATGGGGACTGTGCCATTAAACCTCTTTTTCTTTATAAATTACCCAGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CTTGGGTATTTCTTCATAGCAGTATAAAAATGGATTAATACAGTAAATTGGTACTGGTAGAGTGGGGTACTGCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATTAAGATATCTGAAAATGTGGAAGCAACATTGGAACTGGGTAACAGGCAGAGGTTAGAACAATTTGGAGGGCT 962
Query 1 -----------------ATGGGGGAAAGTTTGGAACTTCCTAGAGACTTGTTGAATGGCTTTGACCAAAATGCT 57
|||.|||||||||||||||||||||||||||||||||||.|||||.||.|.||||||
Sbjct 963 CAGAAGAAGATAGGAAGATGTGGGAAAGTTTGGAACTTCCTAGAGACTTGTTGAATTGCTTTCACTATAATGCT 1036
Query 58 GATAATGATGTGGTCAATGAAATCCAGGCTGAGGTGGTCTCAGATGGAGATGAGGAACTTGTTGGGAAC----- 126
||||.|.||.|||.||||.|||||||||||.||||||||||||||.|||||||||||.|||||||.|||
Sbjct 1037 GATAGTAATATGGACAATAAAATCCAGGCTAAGGTGGTCTCAGATTGAGATGAGGAATTTGTTGGAAACTGGAG 1110
Query 127 -------------------------------------------------------------------------- 126
Sbjct 1111 TAAAGGTCACTCTTGCTATGCAAAGAGATGTACTGCATTTTACCCCCACCCTAGAGATCTGTGGAACTTTGAAC 1184
Query 127 -------------------------------------------------------------------------- 126
Sbjct 1185 TTGAGAGAGATGATTTAGGGTATCTGGTAGAAGAAATTTCTAAGCAGCAAAGTGTTCAAGAAGTAACAGTGCAT 1258
Query 127 -------------------------------------------------------------------------- 126
Sbjct 1259 AAAAGTTTGGAAAATATGCAGCTTGACAATGTGGTAGAACAAAAAGCCCATTTTCTGGGGAGAAATTCAAGCCA 1332
Query 127 -------------------------------------------------------------------------- 126
Sbjct 1333 CTGCAGAAATTTGCACAAGTAATGAGGAACCAAAGGGTAATCCCCAAGACAATGGGTAAAATGTCTCCAGGGCA 1406
Query 127 -------------------------------------------------------------------------- 126
Sbjct 1407 TATGAGAGACCTTCACAGCAGCCCCTCCCATCACAGGCTCAGGGACCTGGGAGGAAAAAATGGTTTTGTGGGCC 1480
Query 127 -------------------------------------------------------------------------- 126
Sbjct 1481 TGGTTCAGGGCTTCCTTCCTGTGTGCAGCCTAGGGACTTGGTGCCCTGTGTCCCAAATGCTCCAGTCATGGCTA 1554
Query 127 -------------------------------------------------------------------------- 126
Sbjct 1555 AAAGTGACCAAAGTACAGCTCAGGTCATTGCTTCAGAAAGTGCGAGTCCCAAAGTCTTGACAGCTTCCACATGG 1628
Query 127 -------------------------------------------------------------------------- 126
Sbjct 1629 TGTTGGTTCTGTGAGCGCACAGAAGTTGAGAACTGAGTTTTGGGAACCTCTGCCTAGTTTTCAGAGGATGTATG 1702
Query 127 -------------------------------------------------------------------------- 126
Sbjct 1703 GAAATACCTGGATGTCGAGGCAGAGGTGTACTGCAGGGGTGGAGCCCTCATGGAGAACCTCTGCTAGGGCAGTG 1776
Query 127 -------------------------------------------------------------------------- 126
Sbjct 1777 CAGAAGGGAAATGTAGGGTGGGAGCCTCCACACAGTGTCCCTATTGGGGTACTTCCTTGTGGAGCTGTGAGAAG 1850
Query 127 -------------------------------------------------------------------------- 126
Sbjct 1851 AAGGCCACCATCCTCCAGATCCCGGAATGGTAGATCCATTGAAAGCTTGAACTGTGCACCTAAAGAAGCCACAG 1924
Query 127 -------------------------------------------------------------------------- 126
Sbjct 1925 ACACTCAATGCCAGCCCAGGAAAGCGGCCAGGAGGGAGGCTGTACCCTGCAAAGCCACAGGGGCAGAGCTGTCC 1998
Query 127 -------------------------------------------------------------------------- 126
Sbjct 1999 GAGGCTGTGGGAGCCCACCTCCTGTATCAGCATGACCTGGATGTGAAACATGGAGTCAAAGGAGATCATTTTGG 2072
Query 127 -------------------------------------------------------------------------- 126
Sbjct 2073 AGCTTTAAGATTTGACTGCCCCACTGGATTTTGGACTTGCATGGGTCCTGCAGCCCCTTTGTTTTAATTAATTT 2146
Query 127 -------------------------------------------------------------------------- 126
Sbjct 2147 CTCCTGTTTAGAATGGCTGTATTTACCCAATGCCTGTACCCCTATTTTATCTAGGAAGTAACTAACTTGCTCTT 2220
Query 127 -------------------------------------------------------------------------- 126
Sbjct 2221 GATTTAACAGGCTCATCGGCAGAAGGAACTTGCCTTGTCTCAGATGAGACTTTGGATATAGACTTTTGAGTAAA 2294
Query 127 -------------------------------------------------------------------------- 126
Sbjct 2295 TGCTGAAATGAGATAACACTTTGGGGGACTGTTGGGAAGGCATGGTTGGTTTTGAAATGTGAGGACATGAGATG 2368
Query 127 -------------------------------------------------------------------------- 126
Sbjct 2369 TGGGAGGGGCTGGGGGTGGAATGATATGGTTTGACTGTGTCCCAACCCAAATCTCATCTTGAATTGTAGCTCCC 2442
Query 127 -------------------------------------------------------------------------- 126
Sbjct 2443 ACAGTTCCCATGTATCCTAGGAGGGACCCGATGGGAGGTAATTGAATCATAGGAGTGGGTTTTCCCCTCCTGTC 2516
Query 127 -------------------------------------------------------------------------- 126
Sbjct 2517 CTCATGATACTGAATAAGTCTCATGAGACCTGATGGTTTTATAAAGAGTAGTTCCTCTAAACATGTTCTCTTCC 2590
Query 127 -------------------------------------------------------------------------- 126
Sbjct 2591 CTGCCACCATGTAAGATGTGCCTTTGCTACTCCTTCACCTTCTGTGATAATTTTGAGGCCTCCCTAGCCATGGG 2664
Query 127 -------------------------------------------------------------------------- 126
Sbjct 2665 GACTGTGAGTCCATTAAACCTCTTTTTCTCTATAAATTACCCAGTCTTGGGTATTTCTTCATAGGAGTAAAAAA 2738
Query 127 -------------------------------------------------------------------------- 126
Sbjct 2739 ATAGACTAATACACTCTTTATCTTTCAGACTTTTCTATATTTTTATAACTTTTTGTGAGACTTCATAAAAGTTT 2812
Query 127 -------------------------------------------------------------------------- 126
Sbjct 2813 AGAAAATGCATTAGTGAATTGTGTTATTGCTAAAAGTGAAAGTCATCTAGCATTCTTATTCACATATGGCCTAG 2886
Query 127 -------------------------------------------------------------------------- 126
Sbjct 2887 TTTTTCAAGAGTTTTTCAGAACTTAGGTTGGCTAGAAAATCACCAGTCTTTTCTCATTATATTGTAGAAATTTC 2960
Query 127 -------------------------------------------------------------------------- 126
Sbjct 2961 ATCAGTGAGTATTATCAGATGTTGTATAAGACCTTACAAAGACCCCACAGAAGTAAAGGCAATAATCCTATATG 3034
Query 127 -------------------------------------------------------------------------- 126
Sbjct 3035 TAAAAAAACAAATTGATAACAAAAACAAAAAACAAAACAAGACAAACTAAAAAGTACTGAAACTTCAAGAAATG 3108
Query 127 -------------------------------------------------------------------------- 126
Sbjct 3109 TTTTTCCAATAATTGAAAATAAATAGCTGTTTGGATGAATATAAAAATAAATCTCAATAAATTAAATTCAGCTG 3182
Query 127 -------------------------------------------------------------------------- 126
Sbjct 3183 CCATTTTTGAATAATTAATTGGTATATGTTGGATTATGTGTGCATATTGTGTAACAATGATACTGGCTGTAAGA 3256
Query 127 ---------------------------------------------------------- 126
Sbjct 3257 TAGCTCATATTGGGTTCTTTTTCTGCTACCTATAATAGATTTGTGAGTGTCTTACAAC 3314
