Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12883
- Subject:
- NR_156699.2
- Aligned Length:
- 3484
- Identities:
- 1555
- Gaps:
- 1927
Alignment
Query 1 -------------------------------ATGATGCAGGGGGAGGCACACCCTAGTGCTTCCCTTATTGACA 43
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGCGCGAGCCTGCGTTTTCCGGCCAGAGGACATGATGCAGGGGGAGGCACACCCTAGTGCTTCCCTTATTGACA 74
Query 44 GAACCATCAAGATGAGAAAAGAAACAGAGGCTAGGAAAGTGGTCTTAGCCTGGGGACTCCTAAATGTATCTATG 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GAACCATCAAGATGAGAAAAGAAACAGAGGCTAGGAAAGTGGTCTTAGCCTGGGGACTCCTAAATGTATCTATG 148
Query 118 GCTGGAATGATATATACTGAAATGACTGGAAAATTGATTAGTTCATACTACAATGTGACATACTGGCCCCTCTG 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GCTGGAATGATATATACTGAAATGACTGGAAAATTGATTAGTTCATACTACAATGTGACATACTGGCCCCTCTG 222
Query 192 GTATATTGAGCTTGCCCTTGCATCTCTCTTCAGCCTTAATGCCTTATTTGATTTTTGGAGATATTTCAAATATA 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GTATATTGAGCTTGCCCTTGCATCTCTCTTCAGCCTTAATGCCTTATTTGATTTTTGGAGATATTTCAAATATA 296
Query 266 CTGTGGCACCAACAAGTCTGGTTGTTAGTCCTGGACAGCAAACACTTTTAGGGTTGAAAACAGCTGTTGTACAG 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTGTGGCACCAACAAGTCTGGTTGTTAGTCCTGGACAGCAAACACTTTTAGGGTTGAAAACAGCTGTTGTACAG 370
Query 340 ACTACGCCTCCACATGATCTGGCAGCAACCCAAATCCCTCCCGCTCCACCTTCCCCTTCAATTCAGGGTCAGAG 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACTACGCCTCCACATGATCTGGCAGCAACCCAAATCCCTCCCGCTCCACCTTCCCCTTCAATTCAGGGTCAGAG 444
Query 414 TGTGTTGAGTTATAGCCCTTCTCGTTCGCCCAGTACCAGTCCCAAGTTCACCACCAGCTGTATGACTGGTTACA 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGTGTTGAGTTATAGCCCTTCTCGTTCGCCCAGTACCAGTCCCAAGTTCACCACCAGCTGTATGACTGGTTACA 518
Query 488 GCCCTCAGCTGCAAGGTCTGTCCTCAGGTGGCAGTGGTTCTTATAGCCCTGGAGTGACCTACTCGCCCGTCAGT 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GCCCTCAGCTGCAAGGTCTGTCCTCAGGTGGCAGTGGTTCTTATAGCCCTGGAGTGACCTACTCGCCCGTCAGT 592
Query 562 GGTTATAATAAGTTGGCGAGCTTTAGCCCCTCTCCTCCTTCTCCGTACCCTACCACTGTTGGACCAGTGGAGAG 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGTTATAATAAGTTGGCGAGCTTTAGCCCCTCTCCTCCTTCTCCGTACCCTACCACTGTTGGACCAGTGGAGAG 666
Query 636 CAGTGGATTGAGATCTCGCTACCGTTCTTCACCTACCGTCTACAACTCACCTACTGACAAAGAAGACTACATGA 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CAGTGGATTGAGATCTCGCTACCGTTCTTCACCTACCGTCTACAACTCACCTACTGACAAAGAAGACTACATGA 740
Query 710 CCGACCTACGAACTTTGGATACTTTTCTCAGAAGTGAAGAGGAGAAACAGCATAGGGTTAAGCTGGGGAGCCCA 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CCGACCTACGAACTTTGGATACTTTTCTCAGAAGTGAAGAGGAGAAACAGCATAGGGTTAAGCTGGGGAGCCCA 814
Query 784 GATTCTACCTCTCCTTCCAGCAGTCCTACTTTCTGGAACTATAGTCGTTCTATGGGGGATTATGCACAAACTTT 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GATTCTACCTCTCCTTCCAGCAGTCCTACTTTCTGGAACTATAGTCGTTCTATGGGGGATTATGCACAAACTTT 888
Query 858 AAAGAAGTTTCAGTATCAGCTTGCCTGTAGGTCTCAGGCCCCATGTGCTAACAAAGATGAAGCCGATCTCAGCT 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAAGAAGTTTCAGTATCAGCTTGCCTGTAGGTCTCAGGCCCCATGTGCTAACAAAGATGAAGCCGATCTCAGCT 962
Query 932 CTAAACAAGCCGCAGAAGAGGTCTGGGCAAGAGTGGCTATGAATAGACAACTTCTTGATCATATGGATTCATGG 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CTAAACAAGCCGCAGAAGAGGTCTGGGCAAGAGTGGCTATGAATAGACAACTTCTTGATCATATGGATTCATGG 1036
Query 1006 ACAGCTAAATTTAGAAATTGGATCAATGAGACAATATTAGTGCCACTTGTTCAAGAGATTGAGTCTGTCAGCAC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ACAGCTAAATTTAGAAATTGGATCAATGAGACAATATTAGTGCCACTTGTTCAAGAGATTGAGTCTGTCAGCAC 1110
Query 1080 ACAGATGAGACGAATGGGTTGTCCAGAGCTACAGATAGG----------------------------------- 1118
|||||||||||||||||||||||||||||||||||||||
Sbjct 1111 ACAGATGAGACGAATGGGTTGTCCAGAGCTACAGATAGGAGAGGCTAGTATTACTAGCTTGAAACAAGCTGCCC 1184
Query 1119 -------------------------------------------------------------------------- 1118
Sbjct 1185 TGGTTAAAGCGCCTCTCATTCCGACTTTGAACACAATCGTTCAGTATCTAGACCTTACTCCAAATCAGGAATAC 1258
Query 1119 ----------------------------------------------AGAACTATCTCAGGGAGGTTGTATGAGC 1146
||||||||||||||||||||||||||||
Sbjct 1259 TTGTTTGAAAGGATCAAAGCTTTTAAAAATTTCACCTTGTTGCCACAGAACTATCTCAGGGAGGTTGTATGAGC 1332
Query 1147 TCATTTCGATGGAACAGAGGTGGCGACTTCAAAGGACGAAAGTGGGATACAGACCTGCCCACCGATTCTGCTAT 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TCATTTCGATGGAACAGAGGTGGCGACTTCAAAGGACGAAAGTGGGATACAGACCTGCCCACCGATTCTGCTAT 1406
Query 1221 CATCATGCATGTATTTTGCACCTACCTTGATTCCAGATTACCTCCACATCCGAAGTATCGCGACGGAAAAACTT 1294
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct 1407 CATCATGCATGTATTTTGCACCTACCTTGATTCCAGATTACCTCCACATCCGAAGTATCCCGACGGAAAAACTT 1480
Query 1295 TTACTTCTCAGCACTTTGTTCAGACACCAAATAAACCAGATGTTACAAATGAGAATGTTTTTTGCATTTATCAG 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TTACTTCTCAGCACTTTGTTCAGACACCAAATAAACCAGATGTTACAAATGAGAATGTTTTTTGCATTTATCAG 1554
Query 1369 AGTGCTATCAACCCTCCCCGTTATGAGCTCATCTACCAGCGTCATGTATACAACCTGCCAAAGGGCAGAAATAA 1442
|||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AGTGCTATCAACCCTCCCCATTATGAGCTCATCTACCAGCGTCATGTATACAACCTGCCAAAGGGCAGAAATAA 1628
Query 1443 TATGTTTCATACATTGTTGATGTTTCTCTACATCATAAAGACCAAAGAGTCAGGAATGCTTGGGAGAGTTAATC 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TATGTTTCATACATTGTTGATGTTTCTCTACATCATAAAGACCAAAGAGTCAGGAATGCTTGGGAGAGTTAATC 1702
Query 1517 TTGGTCTATCTGGTGTGAATATATTGTGGATCTTTGGCGAG--------------------------------- 1557
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TTGGTCTATCTGGTGTGAATATATTGTGGATCTTTGGCGAGTAGCAAGTCATATATTTAATTCTGACATTTAGA 1776
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 1777 CTATTTCACTGAACCAGAAGTCGAAACTAAACATCTCTGAGCCACTGACTCTTCTGAAATAAAATACACATGGG 1850
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 1851 TGTATGTTACAGACTCTTTAGATTTAACAGAAAATGTAGCTGTTATGAAATGTAATTGTAAAAATATGTCCCGT 1924
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 1925 ATCTTCTATATCGAGACATTGCCTTTAATTTTATATCGCTTTTCAGAAATTTCAGTTGACTACAAAACTGCAAC 1998
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 1999 CCTTCGGATTTTTATTGACTCAAAATAGTGCCATTCCCCTTAATGAAATAGATTTTGAGTCTTTTTTTCATTGT 2072
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2073 AACCCCCAAATGAGAATCATCTACCTGATTCTTGTACCAAAAAAAAATTTTTTTCAGTCTTTTTTTTTTTTAGA 2146
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2147 GAGGGTCTCTGTCAACGCAGACTGGAGTGCAGTGGCACGATCTTAGCTCACTACAACTTCTGCCTCCCAGGCTC 2220
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2221 AAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCACCACCACGCCCAGCTAATTTTTG 2294
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2295 TATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCCCGAACTCCTGACCTCAGGTGATCCACCC 2368
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2369 ACCTCGGCCTCCCAAAGTGCTGGGATTATAGGTGCGAGCCACTGCGCCCAGCCTCAGTTATTTTATTTAACAGT 2442
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2443 GTAAGTACTTAGAAAGTAAGAAAATTGCTGATTTAGTTTTTTTTTTTTTTTTTTTAATGTTTCCCCAGCATTCT 2516
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2517 GCAAGTTAGGCCAAAGCCCACATTCAAAGAAATGAGATTAACTCTTAAGTAATGTATTAAGTTTATGTATATTT 2590
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2591 TAAAATATTATTAAAGGAGGTTTGAAAGTATTGACATTTAAAAAGTCAACACTTAGATTAAATTTAGCTGGTAG 2664
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2665 TTTTAATTTGGGTTTTAGTTAAGAGTGTGAGGACATCAGGAAAACTGTTTACTACTTTGGTTTTAGCAGCTCAG 2738
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2739 TTTTACTATTCCATAATGTGTTATTTTTAAAGTTCTCTTTTTAAGATCACAGTGATATCCTATCTTCAAATTTT 2812
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2813 TTAAATATGTTCAAAATATCTGGAGGGTGAGAAGTTACCAAGTTTGTATGTTTTGTTTGACTCACCATCTTTAT 2886
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2887 TTTCTGTATATGTAGTAGCTGGCAATTGCATATATTTTCTTGATTAACATATTAGAGACTGCTTCCATCATCTT 2960
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2961 ATGTAAACCTGGAAACAGCTGAAACTAGTCTTTTCTGAAGAACCGTGTATCAGTGTTAGATGTGCATCCCGTTT 3034
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3035 TGTCATTCCCTCAGACTTTGAATACAGTCATTACTCTCTGGAAGAGAAATGTAAGTATATTTTTTGTTATCTGC 3108
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3109 AGTATGGTTTAACATGTATTAATAATACACATATGCAGACTCACTAAAGTATCCCCAGTAATTAGTAAATTCCA 3182
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3183 AATTTAAGTCAGTACAGTTCTGTATTTGTAAATTCTGTCTTTCAAAAAGTTGTTCGTGTTTTTAAAAGTTGATG 3256
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3257 TCCAAAGGAAAGGAGCTTCTTTTAAGTACTTTTGGTGTATGTTGAATATTTATTTGCTATGATATTCTAGAAGA 3330
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3331 AAATATCAAACATGTTAAATATAAGAACATGTTAAAATTTAAATTTGCTATTTCAAAAGTTACTGAAGATGTCT 3404
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3405 TGGAATAACAATTGTCATGCTGTTAAACTAGTTGCATATACTTCATTAAAAGCACCATGGAGAAACATTTTAAC 3478
Query 1558 ------ 1557
Sbjct 3479 AATGCA 3484
