Construct: ORF ccsbBroadEn_12883

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015334.1_s300c1, BRDN0000393817
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMEM209 (84928)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84928 TMEM209 transmembrane protein 209 NM_001301163.2 99.8% 99.6% 1280C>G;1388A>G
2 human 84928 TMEM209 transmembrane protein 209 NM_032842.4 92.3% 92.1% 1119_1244del;1406C>G;1514A>G
3 human 84928 TMEM209 transmembrane protein 209 NM_001363478.2 92.2% 91.9% (many diffs)
4 human 84928 TMEM209 transmembrane protein 209 XM_005250655.2 92.2% 91.9% (many diffs)
5 human 84928 TMEM209 transmembrane protein 209 NR_156699.2 44.6% (many diffs)
6 mouse 72649 Tmem209 transmembrane protein 209 NM_178625.4 82.3% 87.8% (many diffs)
7 mouse 72649 Tmem209 transmembrane protein 209 NM_001311093.1 82.1% 87.7% (many diffs)
8 mouse 72649 Tmem209 transmembrane protein 209 XM_006505170.3 82.1% 87.7% (many diffs)
9 mouse 72649 Tmem209 transmembrane protein 209 XM_006505171.2 81% 86.3% (many diffs)
10 mouse 72649 Tmem209 transmembrane protein 209 XM_006505172.2 75.4% 80.3% (many diffs)
11 mouse 72649 Tmem209 transmembrane protein 209 NM_001347087.1 57.3% 62% (many diffs)
12 mouse 72649 Tmem209 transmembrane protein 209 XM_017321766.1 57.3% 62% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1623
ORF length:
1557
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAT GCAGGGGGAG GCACACCCTA GTGCTTCCCT TATTGACAGA ACCATCAAGA
121TGAGAAAAGA AACAGAGGCT AGGAAAGTGG TCTTAGCCTG GGGACTCCTA AATGTATCTA
181TGGCTGGAAT GATATATACT GAAATGACTG GAAAATTGAT TAGTTCATAC TACAATGTGA
241CATACTGGCC CCTCTGGTAT ATTGAGCTTG CCCTTGCATC TCTCTTCAGC CTTAATGCCT
301TATTTGATTT TTGGAGATAT TTCAAATATA CTGTGGCACC AACAAGTCTG GTTGTTAGTC
361CTGGACAGCA AACACTTTTA GGGTTGAAAA CAGCTGTTGT ACAGACTACG CCTCCACATG
421ATCTGGCAGC AACCCAAATC CCTCCCGCTC CACCTTCCCC TTCAATTCAG GGTCAGAGTG
481TGTTGAGTTA TAGCCCTTCT CGTTCGCCCA GTACCAGTCC CAAGTTCACC ACCAGCTGTA
541TGACTGGTTA CAGCCCTCAG CTGCAAGGTC TGTCCTCAGG TGGCAGTGGT TCTTATAGCC
601CTGGAGTGAC CTACTCGCCC GTCAGTGGTT ATAATAAGTT GGCGAGCTTT AGCCCCTCTC
661CTCCTTCTCC GTACCCTACC ACTGTTGGAC CAGTGGAGAG CAGTGGATTG AGATCTCGCT
721ACCGTTCTTC ACCTACCGTC TACAACTCAC CTACTGACAA AGAAGACTAC ATGACCGACC
781TACGAACTTT GGATACTTTT CTCAGAAGTG AAGAGGAGAA ACAGCATAGG GTTAAGCTGG
841GGAGCCCAGA TTCTACCTCT CCTTCCAGCA GTCCTACTTT CTGGAACTAT AGTCGTTCTA
901TGGGGGATTA TGCACAAACT TTAAAGAAGT TTCAGTATCA GCTTGCCTGT AGGTCTCAGG
961CCCCATGTGC TAACAAAGAT GAAGCCGATC TCAGCTCTAA ACAAGCCGCA GAAGAGGTCT
1021GGGCAAGAGT GGCTATGAAT AGACAACTTC TTGATCATAT GGATTCATGG ACAGCTAAAT
1081TTAGAAATTG GATCAATGAG ACAATATTAG TGCCACTTGT TCAAGAGATT GAGTCTGTCA
1141GCACACAGAT GAGACGAATG GGTTGTCCAG AGCTACAGAT AGGAGAACTA TCTCAGGGAG
1201GTTGTATGAG CTCATTTCGA TGGAACAGAG GTGGCGACTT CAAAGGACGA AAGTGGGATA
1261CAGACCTGCC CACCGATTCT GCTATCATCA TGCATGTATT TTGCACCTAC CTTGATTCCA
1321GATTACCTCC ACATCCGAAG TATCGCGACG GAAAAACTTT TACTTCTCAG CACTTTGTTC
1381AGACACCAAA TAAACCAGAT GTTACAAATG AGAATGTTTT TTGCATTTAT CAGAGTGCTA
1441TCAACCCTCC CCGTTATGAG CTCATCTACC AGCGTCATGT ATACAACCTG CCAAAGGGCA
1501GAAATAATAT GTTTCATACA TTGTTGATGT TTCTCTACAT CATAAAGACC AAAGAGTCAG
1561GAATGCTTGG GAGAGTTAAT CTTGGTCTAT CTGGTGTGAA TATATTGTGG ATCTTTGGCG
1621AGTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1681gcaacgaac

Download FASTA (ORF) (Full)