Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12929
Subject:
XM_011537294.3
Aligned Length:
3842
Identities:
236
Gaps:
3595

Alignment

Query    1  ATGCGGCTGCTCCTGCTCGTGCCGCTGCTGCTGGCTCCAGCGCCCGGGTCCTCGGCTCCCAAGGTGAGGCGGCA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GAGTGACACCTGGGGACCCTGGAGCCAGTGGAGCCCCTGC--AG-CCGGACCTGTGGA-GGGGGTGTCAGCTTC  144
                                           |...|||||  || .||.|     ||| ||..|||.||     
Sbjct    1  -------------------------------ATGTCCTGCTTAGATCGCA-----GGATGGCTGTGCCA-----  33

Query  145  CGGGAGCGCCCCTGCTACTCCCAGAGGAGAGATGGAGGCTCCAGCTGCGTGGGCCCCGCCCGGAGCCACCGCTC  218
                ||||                 |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   34  ----AGCG-----------------GGAGAGATGGAGGCTCCAGCTGCGTGGGCCCCGCCCGGAGCCACCGCTC  86

Query  219  TTGTCGCACGGAGAGCTGCCCCGACGGCGCCCGGGACTTCCGGGCCGAGCAGTGCGCGGAGTTCGACGGAGCGG  292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   87  TTGTCGCACGGAGAGCTGCCCCGACGGCGCCCGGGACTTCCGGGCCGAGCAGTGCGCGGAGTTCGACGGAGCGG  160

Query  293  AGTTCCAGGGGCGGCGGTATCGGTGGCTGCCCTACTACAGCGCCCCAAACAAGTGTGAACTGAACTGCATTCCC  366
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  161  AGTTCCAGGGGCGGCGGTATCGGTGGCTGCCCTACTACAGCGCCCCAAACAAGTGTGAACTGAACTGCATTCCC  234

Query  367  AAAGTGCTGGG---------ATTACAGGCA--------------------------------------------  387
            ||.|    |||         |.||||.|||                                            
Sbjct  235  AAGG----GGGAGAACTTCTACTACAAGCACAGGGAGGCTGTGGTTGATGGGACGCCCTGCGAGCCTGGCAAGA  304

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  305  GGGATGTCTGTGTGGATGGCAGCTGCCGGGTTGTCGGCTGTGATCACGAGCTGGACTCGTCCAAGCAGGAGGAC  378

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  379  AAGTGTCTGCGGTGTGGGGGTGACGGCACGACCTGCTACCCCGTCGCAGGCACCTTTGACGCTAATGACCTCAG  452

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  453  CCGAGGCTACAACCAGATCCTCATAGTTCCCATGGGTGCCACCAGCATCCTCATCGACGAGGCTGCTGCCAGCA  526

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  527  GGAACTTCCTGGCTGTGAAGAATGTTCGTGGGGAATACTACCTCAATGGGCACTGGACCATCGAGGCGGCCCGG  600

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  601  GCCCTGCCAGCAGCCAGCACCATCCTGCATTACGAGCGGGGTGCTGAGGGGGACCTGGCCCCTGAGCGACTCCA  674

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  675  TGCCCGGGGCCCCACCTCGGAGCCCCTGGTCATCGAGCTCATCAGCCAGGAGCCCAACCCCGGTGTGCACTATG  748

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  749  AGTACCACCTGCCCCTGCGCCGCCCCAGCCCCGGCTTCAGCTGGAGCCACGGCTCATGGAGTGACTGCAGCGCG  822

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  823  GAGTGTGGCGGAGGTCACCAGTCCCGCCTGGTGTTCTGCACCATCGACCATGAGGCCTACCCCGACCACATGTG  896

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  897  CCAGCGCCAGCCACGGCCAGCTGACCGGCGTTCCTGCAATCTTCACCCTTGCCCGGAGACCAAGCGCTGGAAGG  970

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct  971  CAGGGCCATGGGCACCCTGCTCAGCCTCCTGTGGAGGAGGCTCCCAGTCCCGCTCCGTGTACTGCATCTCGTCT  1044

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1045  GACGGGGCCGGCATCCAGGAGGCCGTGGAGGAGGCTGAGTGTGCCGGGCTGCCTGGGAAGCCCCCTGCCATTCA  1118

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1119  GGCCTGTAACCTGCAGCGCTGTGCAGCCTGGAGCCCGGAGCCCTGGGGAGAGTGTTCTGTCAGTTGTGGCGTTG  1192

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1193  GCGTCCGGAAGCGGAGCGTTACTTGCCGGGGTGAAAGGGGTTCTTTGCTCCATACCGCAGCGTGCTCCTTGGAA  1266

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1267  GACCGGCCACCTCTGACTGAGCCCTGTGTGCATGAGGACTGCCCCCTCCTCAGTGACCAGGCCTGGCATGTTGG  1340

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1341  CACCTGGGGTCTATGCTCCAAGAGCTGCAGCTCGGGCACTCGGAGGCGACAGGTCATCTGTGCCATTGGGCCGC  1414

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1415  CCAGCCACTGCGGGAGCCTGCAGCACTCCAAGCCTGTGGATGTGGAGCCTTGTAACACGCAGCCCTGTCATCTC  1488

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1489  CCCCAGGAGGTCCCCAGCATGCAGGATGTGCACACCCCTGCCAGCAACCCCTGGATGCCGTTGGGCCCTCAGGA  1562

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1563  GTCCCCTGCCTCAGACTCCAGAGGCCAGTGGTGGGCAGCCCAGGAACACCCCTCAGCCAGGGGTGACCACAGGG  1636

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1637  GAGAACGAGGTGACCCCAGGGGCGACCAAGGCACCCACCTGTCAGCCCTGGGCCCCGCTCCCTCTCTGCAGCAG  1710

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1711  CCCCCATACCAGCAACCCCTGCGGTCGGGCTCAGGGCCCCACGACTGCAGACACAGTCCTCACGGGTGCTGCCC  1784

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1785  CGATGGCCACACGGCATCTCTCGGGCCTCAGTGGCAAGGCTGCCCTGGGGCCCCCTGTCAGCAGAGCAGGTACG  1858

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1859  GGTGCTGCCCTGACAGGGTATCTGTCGCTGAGGGGCCCCATCACGCTGGCTGCACAAAGTCGTATGGTGGTGAC  1932

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 1933  AGCACCGGGGGCATGCCCAGGTCAAGGGCAGTGGCTTCTACAGTCCACAACACCCACCAGCCCCAGGCCCAGCA  2006

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2007  GAATGAGCCCAGTGAGTGCCGGGGCTCCCAGTTTGGCTGTTGCTATGACAACGTGGCCACTGCAGCCGGTCCTC  2080

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2081  TTGGGGAAGGCTGTGTGGGCCAGCCCAGCCATGCCTACCCCGTGCGGTGCCTGCTGCCCAGTGCCCATGGCTCT  2154

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2155  TGCGCAGACTGGGCTGCCCGCTGGTACTTCGTTGCCTCTGTGGGCCAATGTAACCGCTTCTGGTATGGCGGCTG  2228

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2229  CCATGGCAATGCCAATAACTTTGCCTCGGAGCAAGAGTGCATGAGCAGCTGCCAGGGATCTCTCCATGGGCCCC  2302

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2303  GTCGTCCCCAGCCTGGGGCTTCTGGAAGGAGCACCCACACGGATGGTGGCGGCAGCAGTCCTGCAGGCGAGCAG  2376

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2377  GAACCCAGCCAGCACAGGACAGGGGCCGCGGTGCAGAGAAAGCCCTGGCCTTCTGGTGGTCTCTGGCGGCAAGA  2450

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2451  CCAACAGCCTGGGCCAGGGGAGGCCCCCCACACCCAGGCCTTTGGAGAATGGCCATGGGGGCAGGAGCTTGGGT  2524

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2525  CCAGGGCCCCTGGACTGGGTGGAGATGCCGGATCACCAGCGCCACCCTTCCACAGCTCCTCCTACAGGATTAGC  2598

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2599  TTGGCAGGTGTGGAGCCCTCGTTGGTGCAGGCAGCCCTGGGGCAGTTGGTGCGGCTCTCCTGCTCAGACGACAC  2672

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2673  TGCCCCGGAATCCCAGGCTGCCTGGCAGAAAGATGGCCAGCCCATCTCCTCTGACAGGCACAGGCTGCAGTTCG  2746

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2747  ACGGATCCCTGATCATCCACCCCCTGCAGGCAGAGGACGCGGGCACCTACAGCTGTGGCAGCACCCGGCCAGGC  2820

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2821  CGCGACTCCCAGAAGATCCAACTTCGCATCATAGGGGGTGACATGGCCGTGCTGTCTGAGGCTGAGCTGAGCCG  2894

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2895  CTTCCCTCAGCCCAGGGACCCAGCTCAGGACTTTGGCCAAGCGGGGGCTGCTGGGCCCCTGGGGGCCATCCCCT  2968

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 2969  CTTCACACCCACAGCCTGCAAACAGGCTGCGTTTGGACCAGAACCAGCCCCGGGTGGTGGATGCCAGTCCAGGC  3042

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3043  CAGCGGATCCGGATGACCTGCCGTGCCGAAGGCTTCCCGCCCCCAGCCATCGAGTGGCAGAGAGATGGGCAGCC  3116

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3117  TGTCTCTTCTCCCAGACACCAGCTGCAGCCTGATGGCTCCCTGGTCATTAGCCGAGTGGCTGTAGAAGATGGCG  3190

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3191  GCTTCTACACCTGTGTCGCTTTCAATGGGCAGGACCGAGACCAGCGATGGGTCCAGCTCAGAGTTCTGGGGGAG  3264

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3265  CTGACAATCTCAGGACTGCCCCCTACTGTGACAGTGCCAGAGGGTGATACGGCCAGGCTATTGTGTGTGGTAGC  3338

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3339  AGGAGAAAGTGTGAACATCAGGTGGTCCAGGAACGGGCTACCTGTGCAGGCTGATGGCCACCGTGTCCACCAGT  3412

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3413  CCCCAGATGGCACGCTGCTCATTTACAACTTGCGGGCCAGGGATGAGGGCTCCTACACGTGCAGTGCCTACCAG  3486

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3487  GGGAGCCAGGCAGTCAGCCGCAGCACCGAGGTGAAGGTGGTCTCACCAGCACCCACCGCCCAGCCCAGGGACCC  3560

Query  388  --------------------------------------------------------------------------  387
                                                                                      
Sbjct 3561  TGGCAGGGACTGCGTCGACCAGCCAGAGCTGGCCAACTGTGATTTGATCCTGCAGGCCCAGCTTTGTGGCAATG  3634

Query  388  --------------------------------------------------------------------  387
                                                                                
Sbjct 3635  AGTATTACTCCAGCTTCTGCTGTGCCAGCTGTTCACGTTTCCAGCCTCACGCTCAGCCCATCTGGCAG  3702

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.