Construct: ORF ccsbBroadEn_12929
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013484.1_s300c1, BRDN0000393847
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PAPLN (89932)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 89932 | PAPLN | papilin, proteoglycan like ... | XR_429333.3 | 13% | (many diffs) | |
| 2 | human | 89932 | PAPLN | papilin, proteoglycan like ... | XM_011537296.2 | 12.5% | 12.1% | (many diffs) |
| 3 | human | 89932 | PAPLN | papilin, proteoglycan like ... | XM_017021749.2 | 10.9% | 10.6% | (many diffs) |
| 4 | human | 89932 | PAPLN | papilin, proteoglycan like ... | XM_011537295.3 | 10.4% | 10.1% | (many diffs) |
| 5 | human | 89932 | PAPLN | papilin, proteoglycan like ... | XM_011537293.3 | 10.2% | 9.9% | (many diffs) |
| 6 | human | 89932 | PAPLN | papilin, proteoglycan like ... | NM_173462.4 | 10.1% | 9.8% | (many diffs) |
| 7 | human | 89932 | PAPLN | papilin, proteoglycan like ... | NM_001365907.2 | 10% | 9.7% | (many diffs) |
| 8 | human | 89932 | PAPLN | papilin, proteoglycan like ... | NM_001365906.2 | 9.9% | 9.6% | (many diffs) |
| 9 | human | 89932 | PAPLN | papilin, proteoglycan like ... | XM_011537290.3 | 9.9% | 9.6% | (many diffs) |
| 10 | human | 89932 | PAPLN | papilin, proteoglycan like ... | XM_011537291.3 | 9.9% | 9.6% | (many diffs) |
| 11 | human | 89932 | PAPLN | papilin, proteoglycan like ... | XM_011537292.3 | 9.9% | 9.6% | (many diffs) |
| 12 | human | 89932 | PAPLN | papilin, proteoglycan like ... | NR_158677.2 | 6.9% | (many diffs) | |
| 13 | human | 89932 | PAPLN | papilin, proteoglycan like ... | NR_158678.2 | 6.8% | (many diffs) | |
| 14 | human | 89932 | PAPLN | papilin, proteoglycan like ... | XM_011537294.3 | 6.1% | 5.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 453
- ORF length:
- 387
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCG GCTGCTCCTG CTCGTGCCGC TGCTGCTGGC TCCAGCGCCC GGGTCCTCGG 121 CTCCCAAGGT GAGGCGGCAG AGTGACACCT GGGGACCCTG GAGCCAGTGG AGCCCCTGCA 181 GCCGGACCTG TGGAGGGGGT GTCAGCTTCC GGGAGCGCCC CTGCTACTCC CAGAGGAGAG 241 ATGGAGGCTC CAGCTGCGTG GGCCCCGCCC GGAGCCACCG CTCTTGTCGC ACGGAGAGCT 301 GCCCCGACGG CGCCCGGGAC TTCCGGGCCG AGCAGTGCGC GGAGTTCGAC GGAGCGGAGT 361 TCCAGGGGCG GCGGTATCGG TGGCTGCCCT ACTACAGCGC CCCAAACAAG TGTGAACTGA 421 ACTGCATTCC CAAAGTGCTG GGATTACAGG CATGCCCAAC TTTCTTGTAC AAAGTtggca 481 ttataagaaa gcattgctta tcaatttgtt gcaacgaac