Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12944
Subject:
NR_125333.1
Aligned Length:
4387
Identities:
582
Gaps:
3724

Alignment

Query    1  ATGTTTCCCCATCACTCGAGGA----GTCTGGGCAGAGACTGGACTACA------CCGTGGGAGAATCTGCA--  62
              |||....|||   ||..|||    |.|||.||| ||| ||||.|..|      ||| |.||||  |||||  
Sbjct    1  --GTTAAGGCAT---TCAGGGACTCTGACTGCGCA-AGA-TGGAGTGTAGGCCGGCCG-GCGAGA--CTGCACC  64

Query   63  ------AAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGGA--CATTACT--------CT  120
                  .|.|..|||      |||.||                    ||.|||||  |..||||        .|
Sbjct   65  TCCCAGCATGCCTTG------CAGCCA--------------------GGACTGGAGTCGGTACTTAAGAGTGAT  112

Query  121  CGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCAC-TAAATTGGAGACCACCCTGTTTGTTTGAGTCTA  193
            .|.|.|||.||  .||||||      |||||   ..||.| |..|||..|||           |.||||| .|.
Sbjct  113  GGGGTTCCCTA--GATACTT------TAGGC---CGTCGCATCGATTATAGA-----------GATTGAG-GTG  163

Query  194  GAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTAC  267
            ||||.|.|..||.|    |.||||||                                                
Sbjct  164  GAACCCGGGGCCTG----GGAACTGG------------------------------------------------  185

Query  268  GTCATGAACGCTGAGGG---AGATG--AGCCT---------TCATCAA----AAC----------------GAA  307
               |.|.||||.|||||   |||||  |||||         |.|..||    .||                |||
Sbjct  186  ---ACGCACGCGGAGGGCGAAGATGGAAGCCTGGCGCTGTGTGAGGAAGGGCTACGGCCACTGTGTGGTGGGAA  256

Query  308  GAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATCCTA  381
            ||...|     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  257  GAGGCC-----GGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATCCTA  325

Query  382  GGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAATAT  455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  326  GGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAATAT  399

Query  456  ACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGAGTT  529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  400  ACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGAGTT  473

Query  530  TTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAAGAA  603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  474  TTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAAGAA  547

Query  604  GATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGT-----------------------------  648
            |||||||||||||||||||||||||||||||||||||||||||||                             
Sbjct  548  GATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGACAGG  621

Query  649  ---------------------------------ACAATGCAACTTTT-----TT-------------------T  665
                                             |||.|.|||.||||     ||                   |
Sbjct  622  AAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTGGAAT  695

Query  666  TTTT---------TTTTTCTTTTTT-----GAGACA-----GG----GTCTCACTCTGTC-GCCCAA-------  708
            |.||         |.|||||.|.||     ||||||     ||    ||.|.|||||..| ||||||       
Sbjct  696  TCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAATTCCA  769

Query  709  --------CTGGAGTGCA------GTGGCACAAT-------------------CATGGC-------TCACTACA  742
                    |||...||||      ||.||| |||                   ||.|||       | |.|| |
Sbjct  770  TATGCTGCCTGCCCTGCAATCTGCGTAGCA-AATACGCATCTGTTGTATAATCCAAGGCGAGGTGAT-ATTA-A  840

Query  743  GC---CTCAA--------CCTACTGGGC-------TCAAGTAATCCTCTC-------ATTTCGGCTTCC-----  786
            ||   |.|||        .||||| |||       ||.|||..|.|.|.|       ||..|.|||||.     
Sbjct  841  GCTGACGCAATTGGCAATGCTACT-GGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTGCCCT  913

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct  914  ATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAATTGAA  987

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct  988  TTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGTGAC  1061

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1062  AGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCTGACA  1135

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1136  CTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGCAGAA  1209

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1210  AAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGACTGTC  1283

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1284  ACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTGCCTT  1357

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1358  TATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATTGTTT  1431

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1432  TTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGTTATG  1505

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1506  TTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATTTTCG  1579

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1580  TGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAAAATT  1653

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1654  GACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGGCAAG  1727

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1728  CTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGATTTC  1801

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1802  ATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCAACCA  1875

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1876  GCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATCTTAT  1949

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1950  TACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAACGTG  2023

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2024  TAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACCTTTG  2097

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2098  TTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTGCCCA  2171

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2172  GGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTGCCTC  2245

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2246  AGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGACAGG  2319

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2320  GTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAAGTGC  2393

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2394  TGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTTAGGG  2467

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2468  GAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAAGTGG  2541

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2542  CAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATATTAAC  2615

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2616  TTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTTTCTT  2689

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2690  TTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAATCCT  2763

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2764  CTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAACAAGG  2837

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2838  AATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTAATAG  2911

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2912  AATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATAATTA  2985

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2986  TTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAATTGTA  3059

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3060  ATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTCTCAC  3133

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3134  GCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATT  3207

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3208  CTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATTTTTA  3281

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3282  GTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGCCTCG  3355

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3356  GGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGTATTA  3429

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3430  ATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGATATA  3503

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3504  GACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCATTAG  3577

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3578  TTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAAACAA  3651

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3652  ACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCATTTT  3725

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3726  TCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATTATTT  3799

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3800  TGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTATCCAC  3873

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3874  TTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAATTAA  3947

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3948  ATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGAAAGGTAAA  4021

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4022  CTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAATCTTGTCT  4095

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4096  TTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGAGTTCAA  4169

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4170  GGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTATTATACTCG  4243

Query  787  ---------------------  786
                                 
Sbjct 4244  TAAAAAAAAAAAAAAAAAAAA  4264

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