Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12944
- Subject:
- NR_125333.1
- Aligned Length:
- 4387
- Identities:
- 582
- Gaps:
- 3724
Alignment
Query 1 ATGTTTCCCCATCACTCGAGGA----GTCTGGGCAGAGACTGGACTACA------CCGTGGGAGAATCTGCA-- 62
|||....||| ||..||| |.|||.||| ||| ||||.|..| ||| |.|||| |||||
Sbjct 1 --GTTAAGGCAT---TCAGGGACTCTGACTGCGCA-AGA-TGGAGTGTAGGCCGGCCG-GCGAGA--CTGCACC 64
Query 63 ------AAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGGA--CATTACT--------CT 120
.|.|..||| |||.|| ||.||||| |..|||| .|
Sbjct 65 TCCCAGCATGCCTTG------CAGCCA--------------------GGACTGGAGTCGGTACTTAAGAGTGAT 112
Query 121 CGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCAC-TAAATTGGAGACCACCCTGTTTGTTTGAGTCTA 193
.|.|.|||.|| .|||||| ||||| ..||.| |..|||..||| |.||||| .|.
Sbjct 113 GGGGTTCCCTA--GATACTT------TAGGC---CGTCGCATCGATTATAGA-----------GATTGAG-GTG 163
Query 194 GAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTAC 267
||||.|.|..||.| |.||||||
Sbjct 164 GAACCCGGGGCCTG----GGAACTGG------------------------------------------------ 185
Query 268 GTCATGAACGCTGAGGG---AGATG--AGCCT---------TCATCAA----AAC----------------GAA 307
|.|.||||.||||| ||||| ||||| |.|..|| .|| |||
Sbjct 186 ---ACGCACGCGGAGGGCGAAGATGGAAGCCTGGCGCTGTGTGAGGAAGGGCTACGGCCACTGTGTGGTGGGAA 256
Query 308 GAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATCCTA 381
||...| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 GAGGCC-----GGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATCCTA 325
Query 382 GGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAATAT 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 GGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAATAT 399
Query 456 ACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGAGTT 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 ACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGAGTT 473
Query 530 TTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAAGAA 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 TTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAAGAA 547
Query 604 GATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGT----------------------------- 648
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGACAGG 621
Query 649 ---------------------------------ACAATGCAACTTTT-----TT-------------------T 665
|||.|.|||.|||| || |
Sbjct 622 AAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTGGAAT 695
Query 666 TTTT---------TTTTTCTTTTTT-----GAGACA-----GG----GTCTCACTCTGTC-GCCCAA------- 708
|.|| |.|||||.|.|| |||||| || ||.|.|||||..| ||||||
Sbjct 696 TCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAATTCCA 769
Query 709 --------CTGGAGTGCA------GTGGCACAAT-------------------CATGGC-------TCACTACA 742
|||...|||| ||.||| ||| ||.||| | |.|| |
Sbjct 770 TATGCTGCCTGCCCTGCAATCTGCGTAGCA-AATACGCATCTGTTGTATAATCCAAGGCGAGGTGAT-ATTA-A 840
Query 743 GC---CTCAA--------CCTACTGGGC-------TCAAGTAATCCTCTC-------ATTTCGGCTTCC----- 786
|| |.||| .||||| ||| ||.|||..|.|.|.| ||..|.|||||.
Sbjct 841 GCTGACGCAATTGGCAATGCTACT-GGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTGCCCT 913
Query 787 -------------------------------------------------------------------------- 786
Sbjct 914 ATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAATTGAA 987
Query 787 -------------------------------------------------------------------------- 786
Sbjct 988 TTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGTGAC 1061
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1062 AGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCTGACA 1135
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1136 CTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGCAGAA 1209
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1210 AAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGACTGTC 1283
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1284 ACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTGCCTT 1357
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1358 TATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATTGTTT 1431
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1432 TTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGTTATG 1505
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1506 TTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATTTTCG 1579
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1580 TGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAAAATT 1653
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1654 GACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGGCAAG 1727
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1728 CTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGATTTC 1801
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1802 ATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCAACCA 1875
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1876 GCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATCTTAT 1949
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1950 TACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAACGTG 2023
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2024 TAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACCTTTG 2097
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2098 TTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTGCCCA 2171
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2172 GGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTGCCTC 2245
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2246 AGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGACAGG 2319
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2320 GTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAAGTGC 2393
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2394 TGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTTAGGG 2467
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2468 GAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAAGTGG 2541
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2542 CAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATATTAAC 2615
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2616 TTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTTTCTT 2689
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2690 TTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAATCCT 2763
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2764 CTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAACAAGG 2837
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2838 AATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTAATAG 2911
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2912 AATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATAATTA 2985
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2986 TTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAATTGTA 3059
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3060 ATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTCTCAC 3133
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3134 GCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATT 3207
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3208 CTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATTTTTA 3281
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3282 GTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGCCTCG 3355
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3356 GGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGTATTA 3429
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3430 ATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGATATA 3503
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3504 GACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCATTAG 3577
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3578 TTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAAACAA 3651
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3652 ACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCATTTT 3725
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3726 TCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATTATTT 3799
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3800 TGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTATCCAC 3873
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3874 TTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAATTAA 3947
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3948 ATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGAAAGGTAAA 4021
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4022 CTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAATCTTGTCT 4095
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4096 TTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGAGTTCAA 4169
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4170 GGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTATTATACTCG 4243
Query 787 --------------------- 786
Sbjct 4244 TAAAAAAAAAAAAAAAAAAAA 4264
