Construct: ORF ccsbBroadEn_12944
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003016.1_s300c1, BRDN0000395314
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANGEL2 (90806)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 90806 | ANGEL2 | angel homolog 2 | XM_005273344.1 | 47.9% | 42.7% | (many diffs) |
| 2 | human | 90806 | ANGEL2 | angel homolog 2 | XM_005273345.1 | 47.9% | 42.7% | (many diffs) |
| 3 | human | 90806 | ANGEL2 | angel homolog 2 | XM_005273346.2 | 47.9% | 42.7% | (many diffs) |
| 4 | human | 90806 | ANGEL2 | angel homolog 2 | XM_017002774.1 | 47.9% | 42.7% | (many diffs) |
| 5 | human | 90806 | ANGEL2 | angel homolog 2 | NM_144567.5 | 46% | 41% | (many diffs) |
| 6 | human | 90806 | ANGEL2 | angel homolog 2 | NM_001300753.1 | 27.9% | 22.7% | (many diffs) |
| 7 | human | 90806 | ANGEL2 | angel homolog 2 | NM_001300755.1 | 27.9% | 22.7% | (many diffs) |
| 8 | human | 90806 | ANGEL2 | angel homolog 2 | XM_017002775.1 | 27.9% | 22.7% | (many diffs) |
| 9 | human | 90806 | ANGEL2 | angel homolog 2 | XM_017002776.1 | 27.9% | 22.7% | (many diffs) |
| 10 | human | 90806 | ANGEL2 | angel homolog 2 | XM_017002777.1 | 27.9% | 22.7% | (many diffs) |
| 11 | human | 90806 | ANGEL2 | angel homolog 2 | XM_017002778.1 | 27.9% | 22.7% | (many diffs) |
| 12 | human | 90806 | ANGEL2 | angel homolog 2 | XR_001737527.1 | 18.3% | (many diffs) | |
| 13 | human | 90806 | ANGEL2 | angel homolog 2 | XR_247045.3 | 17.8% | (many diffs) | |
| 14 | human | 90806 | ANGEL2 | angel homolog 2 | XR_001737530.1 | 16.6% | (many diffs) | |
| 15 | human | 90806 | ANGEL2 | angel homolog 2 | XR_001737529.2 | 16.3% | (many diffs) | |
| 16 | human | 90806 | ANGEL2 | angel homolog 2 | XR_001737532.1 | 15.6% | (many diffs) | |
| 17 | human | 90806 | ANGEL2 | angel homolog 2 | XR_001737531.1 | 15.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 852
- ORF length:
- 786
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAGAAAG 61 TTGGCATGTT TCCCCATCAC TCGAGGAGTC TGGGCAGAGA CTGGACTACA CCGTGGGAGA 121 ATCTGCAAAG GTGTTGCTGG AACAGACATA TTTCTAGTTG TATGAGGTGG CCTGGACATT 181 ACTCTCGAGC TCCTTACCCA TACTTCAGTA GTAGGCATTT TTCACTAAAT TGGAGACCAC 241 CCTGTTTGTT TGAGTCTAGA ACTCAGTTCC AGTACTGTAA CTGGAGACCT GACAACCTGA 301 GCCAGACATC TTTGATTCAT CTCTCTAGTT ACGTCATGAA CGCTGAGGGA GATGAGCCTT 361 CATCAAAACG AAGAAAACAC CAAGGTGTGA TAAAGCGGAA TTGGGAATAT ATATGTAGCC 421 ATGATAAAGA AAAAACGAAG ATCCTAGGAG ACAAAAATGT TGATCCCAAA TGTGAAGACA 481 GTGAGAACAA GTTTGACTTT TCAGTGATGT CCTATAATAT ACTTTCACAA GATTTACTGG 541 AAGATAACTC TCACCTTTAT AGACATTGCC GGCGGCCAGT ATTACACTGG AGTTTTAGGT 601 TTCCCAATAT TCTGAAAGAA ATTAAACATT TTGATGCAGA CGTACTTTGT TTGCAAGAAG 661 TTCAAGAAGA TCATTATGGA GCAGAGATCA GGCCAAGTTT GGAATCACTG GGTACAATGC 721 AACTTTTTTT TTTTTTTTTC TTTTTTGAGA CAGGGTCTCA CTCTGTCGCC CAACTGGAGT 781 GCAGTGGCAC AATCATGGCT CACTACAGCC TCAACCTACT GGGCTCAAGT AATCCTCTCA 841 TTTCGGCTTC CTGCCCAACT TTTTTGTACA AAGTtggcat tataagaaag cattgcttat 901 caatttgttg caacgaac