Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12944
Subject:
XR_001737529.2
Aligned Length:
4596
Identities:
753
Gaps:
3814

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGGAAGGAAGAGGAAGAGGGTCTGGGCGATGGTGCATCCGGGACGAGCCTCCAGAGACCAAGCGGGATAGGTA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AACCCGCCGCGCAGCTGGCGGGACGCTGGGCCAACGAGGTCTGGGGTCTTGGCGCGGAGTTCATGGGCCGCCGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCAGGCTTGTGCCAGTGGCTTTGGATCCCTGGCCTGCTTCCCCCAACCCAGCCTCCAGACCAGCGCTGGCCTGC  222

Query    1  ---------------------------------------------------------------------ATGTT  5
                                                                                 |||||
Sbjct  223  TCCACACACTCCGCAGCACCGTCCCGGGAACCGAGCGTCGGCGGGGAGGCCGCCTCTCCGCAATACCCCATGTT  296

Query    6  TCCCCATCACTCGAGGAGTCTGGGCAGAGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACA  79
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TCCCCATCACTCGAGGAGTCTGGGCAGAGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACA  370

Query   80  GACATATTTCTAGTTGTATGAGGTGGCCTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCAT  153
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GACATATTTCTAGTTGTATGAGGTGGCCTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCAT  444

Query  154  TTTTCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGA  227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TTTTCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGA  518

Query  228  CAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAA  301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAA  592

Query  302  AACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAG  375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAG  666

Query  376  ATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTA  449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTA  740

Query  450  TAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACT  523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACT  814

Query  524  GGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTT  597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTT  888

Query  598  CAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGT-----------------------  648
            |||||||||||||||||||||||||||||||||||||||||||||||||||                       
Sbjct  889  CAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCG  962

Query  649  ---------------------------------------ACAATGCAACTTTT-----TT--------------  664
                                                   |||.|.|||.||||     ||              
Sbjct  963  GACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAG  1036

Query  665  -----TTTTT---------TTTTTCTTTTTT-----GAGACA-----GG----GTCTCACTCTGTC-GCCCAA-  708
                 ||.||         |.|||||.|.||     ||||||     ||    ||.|.|||||..| |||||| 
Sbjct 1037  TGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAA  1110

Query  709  --------------CTGGAGTGCA------GTGGCACAAT-------------------CATGGC-------TC  736
                          |||...||||      ||.||| |||                   ||.|||       | 
Sbjct 1111  ATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCA-AATACGCATCTGTTGTATAATCCAAGGCGAGGTGAT-  1182

Query  737  ACTACAGC---CTCAA--------CCTACTGGGC-------TCAAGTAATCCTCTC-------ATTTCGGCTTC  785
            |.|| |||   |.|||        .||||| |||       ||.|||..|.|.|.|       ||..|.|||||
Sbjct 1183  ATTA-AGCTGACGCAATTGGCAATGCTACT-GGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTC  1254

Query  786  C-------------------------------------------------------------------------  786
            .                                                                         
Sbjct 1255  TGCCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAA  1328

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1329  ATTGAATTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCT  1402

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1403  AGTGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTC  1476

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1477  CTGACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCT  1550

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1551  GCAGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAG  1624

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1625  ACTGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATC  1698

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1699  TGCCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTA  1772

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1773  TTGTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCG  1846

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1847  GTTATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATA  1920

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1921  TTTTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGT  1994

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1995  AAAATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTT  2068

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2069  GGCAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTT  2142

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2143  GATTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATC  2216

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2217  CAACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCA  2290

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2291  TCTTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCAT  2364

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2365  AACGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATA  2438

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2439  CCTTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGT  2512

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2513  TGCCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCC  2586

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2587  TGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGA  2660

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2661  GACAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCA  2734

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2735  AAGTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGT  2808

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2809  TTAGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACA  2882

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2883  AAGTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGAT  2956

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2957  ATTAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGT  3030

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3031  TTTCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATA  3104

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3105  AATCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGA  3178

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3179  ACAAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTAT  3252

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3253  TAATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTA  3326

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3327  TAATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAA  3400

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3401  ATTGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTG  3474

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3475  TCTCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAA  3548

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3549  GCAATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTA  3622

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3623  TTTTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCC  3696

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3697  GCCTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACA  3770

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3771  GTATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCA  3844

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3845  GATATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATT  3918

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3919  CATTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAAC  3992

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3993  AAACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCC  4066

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4067  CATTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTA  4140

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4141  TTATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATT  4214

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4215  ATCCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAAC  4288

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4289  AATTAAATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGAAA  4362

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4363  GGTAAACTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAATC  4436

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4437  TTGTCTTTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGA  4510

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4511  GTTCAAGGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTATTA  4584

Query  787  --------  786
                    
Sbjct 4585  TACTCGTA  4592

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