Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12944
Subject:
XR_001737531.1
Aligned Length:
4816
Identities:
753
Gaps:
4034

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TCAGGGACTCTGACTGCGCAAGATGGAGTGTAGGCCGGCCGGCGAGACTGCACCTCCCAGCATGCCTTGCAGCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGGACTGGAGTCGGTACTTAAGAGTGATGGGGTTCCCTAGATACTTTAGGCCGTCGCATCGATTATAGAGATTG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGGTGGAACCCGGGGCCTGGGAACTGGACGCACGCGGAGGGCGAAGATGGAAGCCTGGCGCTGTGTGAGGAAGG  222

Query    1  --------------------------------------ATGTTTCCCCATCACTCGAGGAGTCTGGGCAGAGAC  36
                                                  ||||||||||||||||||||||||||||||||||||
Sbjct  223  GCTACGGCCACTGTGTGGTGGGAAGAGGCCGATACCCCATGTTTCCCCATCACTCGAGGAGTCTGGGCAGAGAC  296

Query   37  TGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGG  110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGG  370

Query  111  ACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGTTTGT  184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGTTTGT  444

Query  185  TTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTC  258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTC  518

Query  259  TCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAAAACGAAGAAAACACC----------------  316
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                
Sbjct  519  TCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAAAACGAAGAAAACACCAAGGTGTTGTGAATAA  592

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  593  GGAAAATGCTCTTCGTTAAGCCATATTTGTGACTTCCGATATTTCACTAATACTTTTCAATCAAGAAAACAGCA  666

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  667  TTGCTAACTTGCCTATCACTTTAAAGTGGTATTTGAAGGATTTGTGTGATACAATTATGACTTTGTAATTAGGC  740

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  741  ACCCTAAAAACCTGATCAGGCCTATTGCTTACTTTCTTTGATTCATCTGTCTTCTCTGCTGTGATCACCTTGTT  814

Query  317  -------------AAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGAT  377
                         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CCTCCTGATATGGAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGAT  888

Query  378  CCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATA  451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATA  962

Query  452  ATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGG  525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGG  1036

Query  526  AGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCA  599
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCA  1110

Query  600  AGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGT-------------------------  648
            |||||||||||||||||||||||||||||||||||||||||||||||||                         
Sbjct 1111  AGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGA  1184

Query  649  -------------------------------------ACAATGCAACTTTT-----TT----------------  664
                                                 |||.|.|||.||||     ||                
Sbjct 1185  CAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTG  1258

Query  665  ---TTTTT---------TTTTTCTTTTTT-----GAGACA-----GG----GTCTCACTCTGTC-GCCCAA---  708
               ||.||         |.|||||.|.||     ||||||     ||    ||.|.|||||..| ||||||   
Sbjct 1259  GAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAAT  1332

Query  709  ------------CTGGAGTGCA------GTGGCACAAT-------------------CATGGC-------TCAC  738
                        |||...||||      ||.||| |||                   ||.|||       | |.
Sbjct 1333  TCCATATGCTGCCTGCCCTGCAATCTGCGTAGCA-AATACGCATCTGTTGTATAATCCAAGGCGAGGTGAT-AT  1404

Query  739  TACAGC---CTCAA--------CCTACTGGGC-------TCAAGTAATCCTCTC-------ATTTCGGCTTCC-  786
            || |||   |.|||        .||||| |||       ||.|||..|.|.|.|       ||..|.|||||. 
Sbjct 1405  TA-AGCTGACGCAATTGGCAATGCTACT-GGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTG  1476

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1477  CCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAAT  1550

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1551  TGAATTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAG  1624

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1625  TGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCT  1698

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1699  GACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGC  1772

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1773  AGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGAC  1846

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1847  TGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTG  1920

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1921  CCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATT  1994

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1995  GTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGT  2068

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2069  TATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATT  2142

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2143  TTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAA  2216

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2217  AATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGG  2290

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2291  CAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGA  2364

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2365  TTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCA  2438

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2439  ACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATC  2512

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2513  TTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAA  2586

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2587  CGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACC  2660

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2661  TTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTG  2734

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2735  CCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTG  2808

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2809  CCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGA  2882

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2883  CAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAA  2956

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2957  GTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTT  3030

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3031  AGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAA  3104

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3105  GTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATAT  3178

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3179  TAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTT  3252

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3253  TCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAA  3326

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3327  TCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAAC  3400

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3401  AAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTA  3474

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3475  ATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATA  3548

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3549  ATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAAT  3622

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3623  TGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTC  3696

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3697  TCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGC  3770

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3771  AATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATT  3844

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3845  TTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGC  3918

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3919  CTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGT  3992

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3993  ATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGA  4066

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4067  TATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCA  4140

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4141  TTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAA  4214

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4215  ACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCA  4288

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4289  TTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATT  4362

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4363  ATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTAT  4436

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4437  CCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAA  4510

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4511  TTAAATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGAAAGG  4584

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4585  TAAACTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAATCTT  4658

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4659  GTCTTTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGAGT  4732

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4733  TCAAGGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTATTATA  4806

Query  787  ------  786
                  
Sbjct 4807  CTCGTA  4812

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