Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12944
- Subject:
- XR_001737532.1
- Aligned Length:
- 4815
- Identities:
- 753
- Gaps:
- 4033
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGCATCCGGGACGAGCCTCCAGAGACCAAGCGGGATAGGTAAACCCGCCGCGCAGCTGGCGGGACGCTGGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AACGAGGTCTGGGGTCTTGGCGCGGAGTTCATGGGCCGCCGGCCAGGCTTGTGCCAGTGGCTTTGGATCCCTGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCTGCTTCCCCCAACCCAGCCTCCAGACCAGCGCTGGCCTGCTCCACACACTCCGCAGCACCGTCCCGGGAACC 222
Query 1 -------------------------------------ATGTTTCCCCATCACTCGAGGAGTCTGGGCAGAGACT 37
|||||||||||||||||||||||||||||||||||||
Sbjct 223 GAGCGTCGGCGGGGAGGCCGCCTCTCCGCAATACCCCATGTTTCCCCATCACTCGAGGAGTCTGGGCAGAGACT 296
Query 38 GGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGGA 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGGA 370
Query 112 CATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGTTTGTT 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGTTTGTT 444
Query 186 TGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTCT 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTCT 518
Query 260 CTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAAAACGAAGAAAACACC----------------- 316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAAAACGAAGAAAACACCAAGGTGTTGTGAATAAG 592
Query 317 -------------------------------------------------------------------------- 316
Sbjct 593 GAAAATGCTCTTCGTTAAGCCATATTTGTGACTTCCGATATTTCACTAATACTTTTCAATCAAGAAAACAGCAT 666
Query 317 -------------------------------------------------------------------------- 316
Sbjct 667 TGCTAACTTGCCTATCACTTTAAAGTGGTATTTGAAGGATTTGTGTGATACAATTATGACTTTGTAATTAGGCA 740
Query 317 -------------------------------------------------------------------------- 316
Sbjct 741 CCCTAAAAACCTGATCAGGCCTATTGCTTACTTTCTTTGATTCATCTGTCTTCTCTGCTGTGATCACCTTGTTC 814
Query 317 ------------AAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATC 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTCCTGATATGGAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATC 888
Query 379 CTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAA 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAA 962
Query 453 TATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGA 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGA 1036
Query 527 GTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAA 1110
Query 601 GAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGT-------------------------- 648
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGAC 1184
Query 649 ------------------------------------ACAATGCAACTTTT-----TT----------------- 664
|||.|.|||.|||| ||
Sbjct 1185 AGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTGG 1258
Query 665 --TTTTT---------TTTTTCTTTTTT-----GAGACA-----GG----GTCTCACTCTGTC-GCCCAA---- 708
||.|| |.|||||.|.|| |||||| || ||.|.|||||..| ||||||
Sbjct 1259 AATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAATT 1332
Query 709 -----------CTGGAGTGCA------GTGGCACAAT-------------------CATGGC-------TCACT 739
|||...|||| ||.||| ||| ||.||| | |.|
Sbjct 1333 CCATATGCTGCCTGCCCTGCAATCTGCGTAGCA-AATACGCATCTGTTGTATAATCCAAGGCGAGGTGAT-ATT 1404
Query 740 ACAGC---CTCAA--------CCTACTGGGC-------TCAAGTAATCCTCTC-------ATTTCGGCTTCC-- 786
| ||| |.||| .||||| ||| ||.|||..|.|.|.| ||..|.|||||.
Sbjct 1405 A-AGCTGACGCAATTGGCAATGCTACT-GGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTGC 1476
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1477 CCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAATT 1550
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1551 GAATTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGT 1624
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1625 GACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCTG 1698
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1699 ACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGCA 1772
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1773 GAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGACT 1846
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1847 GTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTGC 1920
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1921 CTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATTG 1994
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1995 TTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGTT 2068
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2069 ATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATTT 2142
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2143 TCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAAA 2216
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2217 ATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGGC 2290
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2291 AAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGAT 2364
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2365 TTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCAA 2438
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2439 CCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATCT 2512
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2513 TATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAAC 2586
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2587 GTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACCT 2660
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2661 TTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTGC 2734
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2735 CCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTGC 2808
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2809 CTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGAC 2882
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2883 AGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAAG 2956
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2957 TGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTTA 3030
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3031 GGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAAG 3104
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3105 TGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATATT 3178
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3179 AACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTTT 3252
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3253 CTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAAT 3326
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3327 CCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAACA 3400
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3401 AGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTAA 3474
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3475 TAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATAA 3548
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3549 TTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAATT 3622
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3623 GTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTCT 3696
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3697 CACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCA 3770
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3771 ATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATTT 3844
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3845 TTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGCC 3918
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3919 TCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGTA 3992
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3993 TTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGAT 4066
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4067 ATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCAT 4140
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4141 TAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAAA 4214
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4215 CAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCAT 4288
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4289 TTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATTA 4362
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4363 TTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTATC 4436
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4437 CACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAAT 4510
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4511 TAAATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGAAAGGT 4584
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4585 AAACTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAATCTTG 4658
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4659 TCTTTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGAGTT 4732
Query 787 -------------------------------------------------------------------------- 786
Sbjct 4733 CAAGGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTATTATAC 4806
Query 787 ----- 786
Sbjct 4807 TCGTA 4811
