Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12944
Subject:
XR_001737532.1
Aligned Length:
4815
Identities:
753
Gaps:
4033

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGCATCCGGGACGAGCCTCCAGAGACCAAGCGGGATAGGTAAACCCGCCGCGCAGCTGGCGGGACGCTGGGCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AACGAGGTCTGGGGTCTTGGCGCGGAGTTCATGGGCCGCCGGCCAGGCTTGTGCCAGTGGCTTTGGATCCCTGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCTGCTTCCCCCAACCCAGCCTCCAGACCAGCGCTGGCCTGCTCCACACACTCCGCAGCACCGTCCCGGGAACC  222

Query    1  -------------------------------------ATGTTTCCCCATCACTCGAGGAGTCTGGGCAGAGACT  37
                                                 |||||||||||||||||||||||||||||||||||||
Sbjct  223  GAGCGTCGGCGGGGAGGCCGCCTCTCCGCAATACCCCATGTTTCCCCATCACTCGAGGAGTCTGGGCAGAGACT  296

Query   38  GGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGGA  111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGCCTGGA  370

Query  112  CATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGTTTGTT  185
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGTTTGTT  444

Query  186  TGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTCT  259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCATCTCT  518

Query  260  CTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAAAACGAAGAAAACACC-----------------  316
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
Sbjct  519  CTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAAAACGAAGAAAACACCAAGGTGTTGTGAATAAG  592

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  593  GAAAATGCTCTTCGTTAAGCCATATTTGTGACTTCCGATATTTCACTAATACTTTTCAATCAAGAAAACAGCAT  666

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  667  TGCTAACTTGCCTATCACTTTAAAGTGGTATTTGAAGGATTTGTGTGATACAATTATGACTTTGTAATTAGGCA  740

Query  317  --------------------------------------------------------------------------  316
                                                                                      
Sbjct  741  CCCTAAAAACCTGATCAGGCCTATTGCTTACTTTCTTTGATTCATCTGTCTTCTCTGCTGTGATCACCTTGTTC  814

Query  317  ------------AAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATC  378
                        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CTCCTGATATGGAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATC  888

Query  379  CTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAA  452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAA  962

Query  453  TATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGA  526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGA  1036

Query  527  GTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAA  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAA  1110

Query  601  GAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGT--------------------------  648
            ||||||||||||||||||||||||||||||||||||||||||||||||                          
Sbjct 1111  GAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGAC  1184

Query  649  ------------------------------------ACAATGCAACTTTT-----TT-----------------  664
                                                |||.|.|||.||||     ||                 
Sbjct 1185  AGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTGG  1258

Query  665  --TTTTT---------TTTTTCTTTTTT-----GAGACA-----GG----GTCTCACTCTGTC-GCCCAA----  708
              ||.||         |.|||||.|.||     ||||||     ||    ||.|.|||||..| ||||||    
Sbjct 1259  AATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAATT  1332

Query  709  -----------CTGGAGTGCA------GTGGCACAAT-------------------CATGGC-------TCACT  739
                       |||...||||      ||.||| |||                   ||.|||       | |.|
Sbjct 1333  CCATATGCTGCCTGCCCTGCAATCTGCGTAGCA-AATACGCATCTGTTGTATAATCCAAGGCGAGGTGAT-ATT  1404

Query  740  ACAGC---CTCAA--------CCTACTGGGC-------TCAAGTAATCCTCTC-------ATTTCGGCTTCC--  786
            | |||   |.|||        .||||| |||       ||.|||..|.|.|.|       ||..|.|||||.  
Sbjct 1405  A-AGCTGACGCAATTGGCAATGCTACT-GGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTGC  1476

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1477  CCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAATT  1550

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1551  GAATTATGAAGGACTTCCCATAGGAAAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGT  1624

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1625  GACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCTG  1698

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1699  ACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGCA  1772

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1773  GAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGACT  1846

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1847  GTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTGC  1920

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1921  CTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATTG  1994

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 1995  TTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGTT  2068

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2069  ATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATTT  2142

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2143  TCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAAA  2216

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2217  ATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGGC  2290

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2291  AAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGAT  2364

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2365  TTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCAA  2438

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2439  CCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATCT  2512

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2513  TATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAAC  2586

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2587  GTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACCT  2660

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2661  TTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTGC  2734

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2735  CCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTGC  2808

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2809  CTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGAC  2882

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2883  AGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAAG  2956

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 2957  TGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTTA  3030

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3031  GGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAAG  3104

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3105  TGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATATT  3178

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3179  AACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTTT  3252

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3253  CTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAAT  3326

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3327  CCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAACA  3400

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3401  AGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTAA  3474

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3475  TAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATAA  3548

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3549  TTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAATT  3622

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3623  GTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTCT  3696

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3697  CACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCA  3770

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3771  ATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATTT  3844

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3845  TTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGCC  3918

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3919  TCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGTA  3992

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 3993  TTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGAT  4066

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4067  ATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCAT  4140

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4141  TAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAAA  4214

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4215  CAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCAT  4288

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4289  TTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATTA  4362

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4363  TTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTATC  4436

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4437  CACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAAT  4510

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4511  TAAATCTGGTTAATGCCTGAAACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGAAAGGT  4584

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4585  AAACTGTGGAGTAATGAAATTTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAATCTTG  4658

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4659  TCTTTATTTGGAATTTAGTTACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGAGTT  4732

Query  787  --------------------------------------------------------------------------  786
                                                                                      
Sbjct 4733  CAAGGGATTGGGGAAAGAGAGGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTATTATAC  4806

Query  787  -----  786
                 
Sbjct 4807  TCGTA  4811

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