Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12945
- Subject:
- XR_001737530.1
- Aligned Length:
- 4647
- Identities:
- 731
- Gaps:
- 3916
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCAGGGACTCTGACTGCGCAAGATGGAGTGTAGGCCGGCCGGCGAGACTGCACCTCCCAGCATGCCTTGCAGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGGACTGGAGTCGGTACTTAAGAGTGATGGGGTTCCCTAGATACTTTAGGCCGTCGCATCGATTATAGAGATTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGGTGGAACCCGGGGCCTGGGAACTGGACGCACGCGGAGGGCGAAGATGGAAGCCTGGCGCTGTATACCCCATG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTTCCCCATCACTCGAGGAGTCTGGGCAGAGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAGACATATTTCTAGTTGTATGAGGTGGCCTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTTTCACTAAATTGGAGACCACCCTGTTTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GACAACCTGAGCCAGACATCTTTGATTCATCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAAACGAAGAAAACACCAAGGTGTGATAAAGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGA 592
Query 1 --------------------------------------------------------------------ATGTCC 6
||||||
Sbjct 593 AGATCCTAGGAGACAAAAATGTTGATCCCAAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCC 666
Query 7 TATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACA 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TATAATATACTTTCACAAGATTTACTGGAAGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACA 740
Query 81 CTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAG 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTGGAGTTTTAGGTTTCCCAATATTCTGAAAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAG 814
Query 155 TTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATG 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TTCAAGAAGATCATTATGGAGCAGAGATCAGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATG 888
Query 229 CGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CGGACAGGAAGGAAACCTGATGGCTGTGCTATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCC 962
Query 303 AGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCA 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGTGGAATTCTTCCGCCCTGATATTTCTCTGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCA 1036
Query 377 AAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCAAATACGCATCTGTTGTATAATCCAAGGCGAGGTGAT 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AAATTCCATATGCTGCCTGCCCTGCAATCTGCGTAGCAAATACGCATCTGTTGTATAATCCAAGGCGAGGTGAT 1110
Query 451 ATTAAGCTGACGCAATTGGCAATGCTACTGGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTG 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 ATTAAGCTGACGCAATTGGCAATGCTACTGGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTG 1184
Query 525 CCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAAT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CCCTATTGTTATGTGTGGTGACTTTAATTCTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAAT 1258
Query 599 TGAATTATGAAGGACTTCCCATAGGAAAGGTATCTGGCCAGGAACAGTCTTCACGGGGACAAAGAATTTTATCT 672
|||||||||||||||||||||||||||
Sbjct 1259 TGAATTATGAAGGACTTCCCATAGGAA----------------------------------------------- 1285
Query 673 ATTCCAATTTGGCCCCCAAACCTAGGTATCTCACAGAACTGTGTGTATGAGGTACAGCAGGTACCAAAAGTAGA 746
Sbjct 1286 -------------------------------------------------------------------------- 1285
Query 747 AAAGACAGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGTGACAGCTGAAAAATTGTCTT 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 ------AGACAGTGATCTGACACAAACACAGCTGAAGCAAACAGAGGTCCTAGTGACAGCTGAAAAATTGTCTT 1353
Query 821 CAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTAT------------------------------------ 858
||||||||||||||||||||||||||||||||||||||
Sbjct 1354 CAAATTTACAGCACCATTTCAGTTTGTCATCTGTTTATTCACATTACTTTCCTGACACTGGAATTCCAGAAGTG 1427
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1428 ACCACCTGTCATTCCCGAAGTGCCATAACTGTGGATTATATTTTCTACTCTGCAGAAAAGGAAGATGTTGCTGG 1501
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1502 GCACCCAGGAGCTGAAGTTGCTTTGGTTGGTGGCTTGAAACTTCTAGCTAGACTGTCACTTCTTACAGAACAAG 1575
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1576 ACTTATGGACTGTTAATGGACTTCCAAACGAAAATAACTCTTCAGATCATCTGCCTTTATTGGCAAAGTTCAGA 1649
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1650 CTTGAGCTCTGACTCTCTTTGATCACATACTAATTTTCTTTCCAATTTGTATTGTTTTTCAAAGAATGTAAAGT 1723
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1724 TCTTAAGTGTATGCATGTTGTTTATTTTTGCACTGTGGAGATTCTGAAGCGGTTATGTTAGATGCTTTGAAACT 1797
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1798 CCATATCAGAAGAAATAACTTTATAACAATTTTTTTTAATAATGAAAAATATTTTCGTGACAAGTGAGCTCTAA 1871
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1872 ATTCTCTTTATTGTAAAAGAGATGTAAAGGTTTTATATTCTAAATCCTAGTAAAATTGACAGTGATTTTTAAAT 1945
Query 859 -------------------------------------------------------------------------- 858
Sbjct 1946 ATAATGCATCTTCCTTTGTCTGCTTAGTAAAAAATTTCATTTCATAATTTTGGCAAGCTCTGTAGTGGATCCAA 2019
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2020 AGTATCTTTGAGTTCTTGCAAACTACAAGTTGTTTCCTTTCCAGAAGGCTTGATTTCATTAGGAGACCCCTCTA 2093
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2094 TTGAGTTCTAAATAGTTTATCTTAGAAAGCCTTGGGTCATTCACAGGTATCCAACCAGCCATTGTTTAGTTTGT 2167
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2168 TTTTGAAGGGGTTTGATAATGCTTTTTAAGTTGTACAGAATGCTTAATCCATCTTATTACTGTCCTGAGCCATG 2241
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2242 TAATATGCCTGCATCGTGTTGGGGAAATGTTTGGGAAATATAAGCCAGCATAACGTGTAAAGCTCACTCTTTCA 2315
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2316 CCCTGGAACAGACAAGAGGTGGGCTTAATAGAGGCAGAGACTGGGGATATACCTTTGTTTCCCTAGCATTTTTA 2389
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2390 TTTATTTATTTTTATTTTATTTTATTTTTTGAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGGGGTGCAATGG 2463
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2464 CGCAATCTTTGCTCACTGCAACCCCTGCCTCCCGGGCTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTG 2537
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2538 GGATTACAGGCATGCGTCACCACTCCCAGCTAATTTTGTATTTTCAGTAGAGACAGGGTTTCCCCATGTTGGTT 2611
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2612 AGGCTGGTCTCGAACTCCCAACCTCAGGTGATCCGCCCACCTCAGCTCTCAAAGTGCTGGGATTACAGGCGGGA 2685
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2686 GCCACTGCACATGGCAGCATTTTTTAAAAATTCAGTTTTAAGATCTCTGGTTTAGGGGAGAGATTTTATTTTAC 2759
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2760 TGAACCAGTTCTATAGAAATTTATTTTATTAGGAAATTTGTCTTTGGAACAAAGTGGCAGCTATAAAATTATTT 2833
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2834 TTGTTAAGCCTCAGAAATATGAGGAAGCCTGTAAAACTCTAGTGGGGAGATATTAACTTGGAGACCTAATGCTC 2907
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2908 TGTAAATAGTCATTTAAACTGTTGGTTTTAGTGGTTTTGTTTCTAAAATGTTTTCTTTTACCGTGATGCACCAG 2981
Query 859 -------------------------------------------------------------------------- 858
Sbjct 2982 TATGAGATGGTGCTGACACTTTCTATGAAGTGGTTATGAGCAGGTTTAATAAATCCTCTATACAAGTGTTTGAA 3055
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3056 TCAATTTTAAAACATAAAAAGTGGAAATTTCCTTTTTTGTAGACAGTAGGAACAAGGAATTATATGCATTTTTA 3129
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3130 CTAAGTAGTAATTTTACACTGAATTGTAAATGTTTTTACAGTGAGTTTTATTAATAGAATGCTTCACCTTAAAT 3203
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3204 TGGAAAACAATAATAGTCTTGGACTAAGTCTTTGTACTAAAGCATTTGCTATAATTATTTTTAAAAAAACAAAC 3277
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3278 AGATGAAAACCTCAGAGAAGGCATGTGGATTATAAGATTTGTCTAGTAAAAATTGTAATTGAATATGTTTAAAT 3351
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3352 ATTTAATTTCTCATTTTGGGGGGTTTTTATTTTTTTATTTTTTAGATGGTGTCTCACGCTATCGCCCAGGCTGG 3425
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3426 AGTGCAGTGGCGCGAACTCGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTTCCTCAGCCTCC 3499
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3500 CAAGTAGCTGGGATTACAGGCATGCACCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGAATTTTG 3573
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3574 CCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGGGTGATCCACCCGCCTCGGGCTCCCAAAGTGCTGT 3647
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3648 GATTACAGGCATGAGCCACCATGCCTGGCCTTTGGGGGGATTTTAATTACAGTATTAATTATAGTTCTAGGATT 3721
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3722 TCCCACATTTTATAGTAGTAGTTTGCAGGATATTATGTGCCCTAATTAGCAGATATAGACATTATCAAATTATA 3795
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3796 ATGATAGTATAATTATCCCTTTTTAATATTGGGGAAAGAAAAATGAAAATTCATTAGTTAATTACTGCTTTGTG 3869
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3870 TTGTGTGAATTTATTAACAAATAACATTATTACATATAGGTCATTGTTAACAAACAAACATCCCTGAAAACCTC 3943
Query 859 -------------------------------------------------------------------------- 858
Sbjct 3944 TGTGAAAATTTAATTTTTTATATCCTGATTAATATATTGTGACTTTAGGCCCATTTTTCATGTGCTTCACTTTG 4017
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4018 ATAGAGTTAATCCATAAAATTGCTCTTTACTTTAGCTTATCAAATGAAGTATTATTTTGTGGACTGGAGGCCAA 4091
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4092 AAAGTCAATGTGAGCTTCTCACAGGTTTTTAAAGCTCCACTAAAAATAATTATCCACTTGTCTTTACTTTTGTT 4165
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4166 GACCAGAATAGTTGGTAACTCTGCCAGAGCCTGTACTTACCTGCCAAAAACAATTAAATCTGGTTAATGCCTGA 4239
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4240 AACCAAATCTCTCAGTCTCAAGTGTTATACTATCCAAGTTTTAAATGGAAAGGTAAACTGTGGAGTAATGAAAT 4313
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4314 TTTGGTTTTACTGTACCTTTTGCTATCAAGATAATATTCATGTTTGAAATCTTGTCTTTATTTGGAATTTAGTT 4387
Query 859 -------------------------------------------------------------------------- 858
Sbjct 4388 ACTGTCTGCTTTTAACCTTTGCTTTCCTAAAGAAAGTTTGAGATCCAGAGAGTTCAAGGGATTGGGGAAAGAGA 4461
Query 859 ----------------------------------------------------------- 858
Sbjct 4462 GGCGTCAAGTCATTTGCACTTTGTACCTGTAAGTTAGGTAATAAACTATTATACTCGTA 4520
