Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_12945
Subject:
XR_247045.3
Aligned Length:
4339
Identities:
731
Gaps:
3608

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCCAGGACTGGAGTCGGTACTTAAGAGTGATGGGGTTCCCTAGATACTTTAGGCCGTCGCATCGATTATAGAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATTGAGGTGGAACCCGGGGCCTGGGAACTGGACGCACGCGGAGGGCGAAGATGGAAGCCTGGCGCTGTGTGAGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AAGGGCTACGGCCACTGTGTGGTGGGAAGAGGCCGATACCCCATGTTTCCCCATCACTCGAGGAGTCTGGGCAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGACTGGACTACACCGTGGGAGAATCTGCAAAGGTGTTGCTGGAACAGACATATTTCTAGTTGTATGAGGTGGC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTGGACATTACTCTCGAGCTCCTTACCCATACTTCAGTAGTAGGCATTTTTCACTAAATTGGAGACCACCCTGT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TTGTTTGAGTCTAGAACTCAGTTCCAGTACTGTAACTGGAGACCTGACAACCTGAGCCAGACATCTTTGATTCA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TCTCTCTAGTTACGTCATGAACGCTGAGGGAGATGAGCCTTCATCAAAACGAAGAAAACACCAAGGTGTGATAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGCGGAATTGGGAATATATATGTAGCCATGATAAAGAAAAAACGAAGATCCTAGGAGACAAAAATGTTGATCCC  592

Query    1  ---------------------------------------ATGTCCTATAATATACTTTCACAAGATTTACTGGA  35
                                                   |||||||||||||||||||||||||||||||||||
Sbjct  593  AAATGTGAAGACAGTGAGAACAAGTTTGACTTTTCAGTGATGTCCTATAATATACTTTCACAAGATTTACTGGA  666

Query   36  AGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGA  109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGATAACTCTCACCTTTATAGACATTGCCGGCGGCCAGTATTACACTGGAGTTTTAGGTTTCCCAATATTCTGA  740

Query  110  AAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATC  183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AAGAAATTAAACATTTTGATGCAGACGTACTTTGTTTGCAAGAAGTTCAAGAAGATCATTATGGAGCAGAGATC  814

Query  184  AGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGC  257
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  AGGCCAAGTTTGGAATCACTGGGTTATCACTGTGAATATAAGATGCGGACAGGAAGGAAACCTGATGGCTGTGC  888

Query  258  TATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTC  331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TATTTGCTTCAAACATTCCAAATTTTCACTCTTGTCAGTGAACCCAGTGGAATTCTTCCGCCCTGATATTTCTC  962

Query  332  TGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATC  405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGTTGGACAGAGACAATGTTGGATTAGTTTTACTCTTACAGCCCAAAATTCCATATGCTGCCTGCCCTGCAATC  1036

Query  406  TGCGTAGCAAATACGCATCTGTTGTATAATCCAAGGCGAGGTGATATTAAGCTGACGCAATTGGCAATGCTACT  479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGCGTAGCAAATACGCATCTGTTGTATAATCCAAGGCGAGGTGATATTAAGCTGACGCAATTGGCAATGCTACT  1110

Query  480  GGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTGCCCTATTGTTATGTGTGGTGACTTTAATT  553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GGCAGAGATTTCCAGTGTTGCCCACCAGAAAGATGGCAGCTTCTGCCCTATTGTTATGTGTGGTGACTTTAATT  1184

Query  554  CTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAATTGAATTATGAAGGACTTCCCATAGGAAAG  627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct 1185  CTGTTCCTGGTTCTCCACTATATAGTTTCATAAAGGAAGGAAAATTGAATTATGAAGGACTTCCCATAGGAA--  1256

Query  628  GTATCTGGCCAGGAACAGTCTTCACGGGGACAAAGAATTTTATCTATTCCAATTTGGCCCCCAAACCTAGGTAT  701
                                                                                      
Sbjct 1257  --------------------------------------------------------------------------  1256

Query  702  CTCACAGAACTGTGTGTATGAGGTACAGCAGGTACCAAAAGTAGAAAAGACAGACAGTGATCTGACACAAACAC  775
                                                               |||||||||||||||||||||||
Sbjct 1257  ---------------------------------------------------AGACAGTGATCTGACACAAACAC  1279

Query  776  AGCTGAAGCAAACAGAGGTCCTAGTGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCA  849
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1280  AGCTGAAGCAAACAGAGGTCCTAGTGACAGCTGAAAAATTGTCTTCAAATTTACAGCACCATTTCAGTTTGTCA  1353

Query  850  TCTGTTTAT-----------------------------------------------------------------  858
            |||||||||                                                                 
Sbjct 1354  TCTGTTTATTCACATTACTTTCCTGACACTGGAATTCCAGAAGTGACCACCTGTCATTCCCGAAGTGCCATAAC  1427

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1428  TGTGGATTATATTTTCTACTCTGCAGAAAAGGAAGATGTTGCTGGGCACCCAGGAGCTGAAGTTGCTTTGGTTG  1501

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1502  GTGGCTTGAAACTTCTAGCTAGACTGTCACTTCTTACAGAACAAGACTTATGGACTGTTAATGGACTTCCAAAC  1575

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1576  GAAAATAACTCTTCAGATCATCTGCCTTTATTGGCAAAGTTCAGACTTGAGCTCTGACTCTCTTTGATCACATA  1649

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1650  CTAATTTTCTTTCCAATTTGTATTGTTTTTCAAAGAATGTAAAGTTCTTAAGTGTATGCATGTTGTTTATTTTT  1723

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1724  GCACTGTGGAGATTCTGAAGCGGTTATGTTAGATGCTTTGAAACTCCATATCAGAAGAAATAACTTTATAACAA  1797

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1798  TTTTTTTTAATAATGAAAAATATTTTCGTGACAAGTGAGCTCTAAATTCTCTTTATTGTAAAAGAGATGTAAAG  1871

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1872  GTTTTATATTCTAAATCCTAGTAAAATTGACAGTGATTTTTAAATATAATGCATCTTCCTTTGTCTGCTTAGTA  1945

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 1946  AAAAATTTCATTTCATAATTTTGGCAAGCTCTGTAGTGGATCCAAAGTATCTTTGAGTTCTTGCAAACTACAAG  2019

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2020  TTGTTTCCTTTCCAGAAGGCTTGATTTCATTAGGAGACCCCTCTATTGAGTTCTAAATAGTTTATCTTAGAAAG  2093

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2094  CCTTGGGTCATTCACAGGTATCCAACCAGCCATTGTTTAGTTTGTTTTTGAAGGGGTTTGATAATGCTTTTTAA  2167

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2168  GTTGTACAGAATGCTTAATCCATCTTATTACTGTCCTGAGCCATGTAATATGCCTGCATCGTGTTGGGGAAATG  2241

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2242  TTTGGGAAATATAAGCCAGCATAACGTGTAAAGCTCACTCTTTCACCCTGGAACAGACAAGAGGTGGGCTTAAT  2315

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2316  AGAGGCAGAGACTGGGGATATACCTTTGTTTCCCTAGCATTTTTATTTATTTATTTTTATTTTATTTTATTTTT  2389

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2390  TGAGATGGAGTTTCACTCTTGTTGCCCAGGCTGGGGGTGCAATGGCGCAATCTTTGCTCACTGCAACCCCTGCC  2463

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2464  TCCCGGGCTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGTCACCACTCCCAG  2537

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2538  CTAATTTTGTATTTTCAGTAGAGACAGGGTTTCCCCATGTTGGTTAGGCTGGTCTCGAACTCCCAACCTCAGGT  2611

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2612  GATCCGCCCACCTCAGCTCTCAAAGTGCTGGGATTACAGGCGGGAGCCACTGCACATGGCAGCATTTTTTAAAA  2685

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2686  ATTCAGTTTTAAGATCTCTGGTTTAGGGGAGAGATTTTATTTTACTGAACCAGTTCTATAGAAATTTATTTTAT  2759

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2760  TAGGAAATTTGTCTTTGGAACAAAGTGGCAGCTATAAAATTATTTTTGTTAAGCCTCAGAAATATGAGGAAGCC  2833

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2834  TGTAAAACTCTAGTGGGGAGATATTAACTTGGAGACCTAATGCTCTGTAAATAGTCATTTAAACTGTTGGTTTT  2907

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2908  AGTGGTTTTGTTTCTAAAATGTTTTCTTTTACCGTGATGCACCAGTATGAGATGGTGCTGACACTTTCTATGAA  2981

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 2982  GTGGTTATGAGCAGGTTTAATAAATCCTCTATACAAGTGTTTGAATCAATTTTAAAACATAAAAAGTGGAAATT  3055

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3056  TCCTTTTTTGTAGACAGTAGGAACAAGGAATTATATGCATTTTTACTAAGTAGTAATTTTACACTGAATTGTAA  3129

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3130  ATGTTTTTACAGTGAGTTTTATTAATAGAATGCTTCACCTTAAATTGGAAAACAATAATAGTCTTGGACTAAGT  3203

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3204  CTTTGTACTAAAGCATTTGCTATAATTATTTTTAAAAAAACAAACAGATGAAAACCTCAGAGAAGGCATGTGGA  3277

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3278  TTATAAGATTTGTCTAGTAAAAATTGTAATTGAATATGTTTAAATATTTAATTTCTCATTTTGGGGGGTTTTTA  3351

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3352  TTTTTTTATTTTTTAGATGGTGTCTCACGCTATCGCCCAGGCTGGAGTGCAGTGGCGCGAACTCGGCTCACTGC  3425

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3426  AACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTTCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCA  3499

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3500  CCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGAATTTTGCCATGTTGGCCAGGCTGGTCTTGAACTCC  3573

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3574  TGACCTCAGGGGTGATCCACCCGCCTCGGGCTCCCAAAGTGCTGTGATTACAGGCATGAGCCACCATGCCTGGC  3647

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3648  CTTTGGGGGGATTTTAATTACAGTATTAATTATAGTTCTAGGATTTCCCACATTTTATAGTAGTAGTTTGCAGG  3721

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3722  ATATTATGTGCCCTAATTAGCAGATATAGACATTATCAAATTATAATGATAGTATAATTATCCCTTTTTAATAT  3795

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3796  TGGGGAAAGAAAAATGAAAATTCATTAGTTAATTACTGCTTTGTGTTGTGTGAATTTATTAACAAATAACATTA  3869

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3870  TTACATATAGGTCATTGTTAACAAACAAACATCCCTGAAAACCTCTGTGAAAATTTAATTTTTTATATCCTGAT  3943

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 3944  TAATATATTGTGACTTTAGGCCCATTTTTCATGTGCTTCACTTTGATAGAGTTAATCCATAAAATTGCTCTTTA  4017

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 4018  CTTTAGCTTATCAAATGAAGTATTATTTTGTGGACTGGAGGCCAAAAAGTCAATGTGAGCTTCTCACAGGTTTT  4091

Query  859  --------------------------------------------------------------------------  858
                                                                                      
Sbjct 4092  TAAAGCTCCACTAAAAATAATTATCCACTTGTCTTTACTTTTGTTGACCAGAATAGTTGGTAACTCTGCCAGAG  4165

Query  859  -----------------------------------------------  858
                                                           
Sbjct 4166  CCTGTACTTACCTGCCAAAAACAATTAAATCTGGTTAATGCCTGAAA  4212

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