Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12996
- Subject:
- XR_001747262.1
- Aligned Length:
- 4561
- Identities:
- 1875
- Gaps:
- 2665
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGGCGGGGCGCGGCGGCAGCGGAGCGTTGTCGGCCAGTGCCTTCCGTGAAGTTGCTCGCCGGGTCGTTGGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTGTCGACCTGTAGGCGGGCGAGCGAGCCAGCGGACAAGACTGCGGGTGAGGCTGAGCTAGCGAGCGGCCGGCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGGGGGGCGCCCGGGCTGCGAGCCGCTGAGCCCAGCCGCGCTGCCGCCGCCGGCCGTCGTGGGGCCGGAATGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCAAGGCCGGAGTGGCGCGGGCGCTCGGCGCTGGGCTGCCGGGTAGAGTCCTGTCCCCGCCCCTCGCCTTGCGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCTGACGCCGGCCGCTGCTGCCCGGGGACCGGAGCGGCGGGCCGCCTTTGCCCAGGACACACGCTCTGGCGTTT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTTCCTTTGGGCGTGACGCCAGCTTCAACGGGTACGCGGCTTTCCCGACGGGTGCTGATCTCCGAGTCGCTGTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTCACGCGGACTGCTGTCCTCCAGATTCAGGCCGGTGGGTCTGGGGAGCCCGGATTGGTCTTGGAGGAGCAACG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCTGCGCAGGTACAAAACTCAAAACATGAACAACAATATATATTACCAATCTTCAAACCTGGTTTGCCTAGAAC 592
Query 1 ----------------------------------------------------ATGG--AACTTGAAAATG---- 16
|||| ||| .||||| |
Sbjct 593 TGGAATACAGTTGCCTGCGACATATTTTAGAAGAACTAGAAAAGTCAAAGTAATGGATAAC-AGAAAA-GAGCC 664
Query 17 ---ATTATTGCTTGAATGATTACAACAT-------------TTCAGA---------------AGGGTGGA---- 55
||| |||.||||||.|.||||| |.|||| |...||||
Sbjct 665 TCCATT----CTTCAATGATGATAACATGGGACCATTTTACTACAGACTTCATTTCTGTGATACCATGGAGCTC 734
Query 56 --CCTTGAAGC--TA----------GTTTTG-GCTATGCGTGGCGGACCTAT---------------------- 92
|.|||||.| || |||||| |||..|.||..| ||||.|
Sbjct 735 TTCATTGAAACATTAACTGGAACATGTTTTGAGCTGAGAGTTTC--ACCTTTTGAAACTGTTATTTCTGTGAAA 806
Query 93 --AAATACTAGAAG------AGTTCCTACAGACGATCCACTTAGGACGATGGCAGAGTACTTGGATTCCAGTCG 158
|||.|.|.|||| ||||||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 807 GCAAAAATTCGAAGATTGGAAGTTCCTACAGACGATCCACTTAGGAAGATGGCAGAGTACTTGGATTCCAGTCG 880
Query 159 AGTTGAGGTCTGGGAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGGTATACCAAGAAGGAGATCAATTGA 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 AGTTGAGGTCTGGGAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGGTATACCAAGAAGGAGATCAATTGA 954
Query 233 ATTTCTTTCCTGCAGTAGATAGGGGAGATGGCACTTTAACACCGTTATCTGACTCTTCAAAGAAAATAGATTTT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 ATTTCTTTCCTGCAGTAGATAGGGGAGATGGCACTTTAACACCGTTATCTGACTCTTCAAAGAAAATAGATTTT 1028
Query 307 CATTTGCATGTCCTACGGAGAAAAGGAGAACATCGTATGAGTGGTGGTTCTATGTATAATTCAGATACAGATGA 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 CATTTGCATGTCCTACGGAGAAAAGGAGAACATCGTATGAGTGGTGGTTCTATGTATAATTCAGATACAGATGA 1102
Query 381 GGATGAAGAAACTGAGCCTTCTTCTTCTGGGCAACAGATAATTGAAAATTCAATAACTATGAATAAGATGAAGC 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 GGATGAAGAAACTGAGCCTTCTTCTTCTGGGCAACAGATAATTGAAAATTCAATAACTATGAATAAGATGAAGC 1176
Query 455 TGCTGAAGGCTAAGATGAAGAACATGAATCTCAGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACCTCACCCA 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TGCTGAAGGCTAAGATGAAGAACATGAATCTCAGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACCTCACCCA 1250
Query 529 CCTGTAGCTCCTCGACCTTCTAGTGGTTCCACTGCACCATCTCGCCACCGATTGTTAAGGGTCCTCCCCAACAT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 CCTGTAGCTCCTCGACCTTCTAGTGGTTCCACTGCACCATCTCGCCACCGATTGTTAAGGGTCCTCCCCAACAT 1324
Query 603 TGGTCAATCTTGTTCACCTGCTTTTGGGAATGCATATCCGCCCGAAATCTCCAGGAATGGAATTTCAAGTTTGG 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 TGGTCAATCTTGTTCACCTGCTTTTGGGAATGCATATCCGCCCGAAATCTCCAGGAATGGAATTTCAAGTTTGG 1398
Query 677 CAACTCAACTCTCTGCTGAGAGATACATATCTTCTATCACTGGTGAATTTCTTAAGGAAGATAATAGCTGGGAG 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 CAACTCAACTCTCTGCTGAGAGATACATATCTTCTATCACTGGTGAATTTCTTAAGGAAGATAATAGCTGGGAG 1472
Query 751 AATAACACACTGTCTCACTTCAGTAGCAACGTCAAACTACCTCCTCAGATACCCCATTTGGAGTTGGGAAATGA 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473 AATAACACACTGTCTCACTTCAGTAGCAACGTCAAACTACCTCCTCAGATACCCCATTTGGAGTTGGGAAATGA 1546
Query 825 CCAGGAGCTTGCTGACTCTGTTCTCCATCTTGGATCATCCCTGCCTAGGCAAACAAAACATTTTTTAGGAAACT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 CCAGGAGCTTGCTGACTCTGTTCTCCATCTTGGATCATCCCTGCCTAGGCAAACAAAACATTTTTTAGGAAACT 1620
Query 899 TGCCATCTAGTAATGGGAACATTGTCTTACCTTCAGAAGAATGTGTAACCGAACAATCACTTCTACCTAAAGTG 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 TGCCATCTAGTAATGGGAACATTGTCTTACCTTCAGAAGAATGTGTAACCGAACAATCACTTCTACCTAAAGTG 1694
Query 973 GGCTCACTGGCTTCATTTGCAGAAGGAAATGCTGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCAAAGTGAA 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1695 GGCTCACTGGCTTCATTTGCAGAAGGAAATGCTGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCAAAGTGAA 1768
Query 1047 TCTGGAGTTGCTACTCACTAATGCTGACAAAGGGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTTGCAGGAG 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1769 TCTGGAGTTGCTACTCACTAATGCTGACAAAGGGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTTGCAGGAG 1842
Query 1121 TGCTGAATGGGGAATCAGTAGAGACTTCAGTTCTTAACTACCGGGAATTAAGTCCTCACAAGAATAGACTCTTG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843 TGCTGAATGGGGAATCAGTAGAGACTTCAGTTCTTAACTACCGGGAATTAAGTCCTCACAAGAATAGACTCTTG 1916
Query 1195 TCACCTCTTCGCTGTTCTGCACCAATGTCGCTACATAATTCTCTGGTGAAACCAGAGAGACAGTCCAAATGTTT 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 TCACCTCTTCGCTGTTCTGCACCAATGTCGCTACATAATTCTCTGGTGAAACCAGAGAGACAGTCCAAATGTTT 1990
Query 1269 TGAGTTTGGGAAGCTACAGCCTTCTTCTTCTCAGTCACTGGATGTTCAAAACATAACTGATTCTTCTTTCTCTA 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1991 TGAGTTTGGGAAGCTACAGCCTTCTTCTTCTCAGTCACTGGATGTTCAAAACATAACTGATTCTTCTTTCTCTA 2064
Query 1343 GGACTACTTGCTTTCAAGGTGTTAAAGTTGATTCGCTTGGGAAAAGATCTGATGTTATTTCCAAAGTTGAGGCT 1416
||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 2065 GGACTACTTGCTTTCAAGGTGTTAAAGTTGATTCACTTGGGAAAAGATCTGATGTTATTTCCAAAGTTGAGGCT 2138
Query 1417 CGGGATATCACAGAAATGACTAACAAGGCTTCCAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTTTTCTTGC 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2139 CGGGATATCACAGAAATGACTAACAAGGCTTCCAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTTTTCTTGC 2212
Query 1491 CTCACTGGCCGGGAGCACAAGCAGAAATAGATTACAGAGCACACGTGGGGCAGGCAGGCTTCAGAACTCTGGAA 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2213 CTCACTGGCCGGGAGCACAAGCAGAAATAGATTACAGAGCACACGTGGGGCAGGCAGGCTTCAGAACTCTGGAA 2286
Query 1565 CTGGGCTGTCTACAAACCTCCAGCATTTTCAGGAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGAACATACA 1638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2287 CTGGGCTGTCTACAAACCTCCAGCATTTTCAGGAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGAACATACA 2360
Query 1639 GGAGTTTTTTTGTCTACCCATGGTGTTGGAATGAATGGAAATAATGCAGCAGCAGGGAAAAGCGTAGGAGAATG 1712
||||||||||| ||||||||
Sbjct 2361 GGAGTTTTTTT-------------------------------------------------------GGAGAATG 2379
Query 1713 TACTACTCATCACCTCCCACCTGTGAAAGCCCCTCTTCAGACAAAGAAGAAAACAACAAATCATTGTTTTCTTT 1786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2380 TACTACTCATCACCTCCCACCTGTGAAAGCCCCTCTTCAGACAAAGAAGAAAACAACAAATCATTGTTTTCTTT 2453
Query 1787 GTGGAAAGAAAACAGGACTGGCTAGTAGCTACGAATGCAGATGTGGAAACAACTTCTGTGCATCTCATCGTTAT 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2454 GTGGAAAGAAAACAGGACTGGCTAGTAGCTACGAATGCAGATGTGGAAACAACTTCTGTGCATCTCATCGTTAT 2527
Query 1861 GCAGAAACTCATGGCTGTACCTATGATTACAAGAGTGCAGGGAGGAGATACTTGCACGAGGCAAATCCTGTGGT 1934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2528 GCAGAAACTCATGGCTGTACCTATGATTACAAGAGTGCAGGGAGGAGATACTTGCACGAGGCAAATCCTGTGGT 2601
Query 1935 TAATGCACCAAAGCTTCCAAAAATC------------------------------------------------- 1959
|||||||||||||||||||||||||
Sbjct 2602 TAATGCACCAAAGCTTCCAAAAATCTAACTCTTCCTCTACATCTTACTGTTCTGCCCGGGATTCGTATTATAAT 2675
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2676 GACAGAAGAAATGTTGTTTAGACTATTATTTTTGTTCGACTCTAAAAGATTTGCCAAATAACAAAAGCATACAA 2749
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2750 TGCATACTGTTGGAGAACAAGAATGCTACTGTATTTTACATCTTTATTTCTTGGTGAAACAAAAGTTTTAAAAG 2823
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2824 TAGTTTTAACAACTTTACACTGGAATGATTTAGCTTTGTTATTGCATGTCTTGTGTTAAGTGTTTTGTATATGA 2897
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2898 TATTGCAGTTTTACTAGGCAAATCTTCAAAAGATGCACTTTAGGAAACGAAATATTTCCTAAATAACCAGGCTT 2971
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2972 CCACATTGTACAGAATGAGCAGTCATGTAATGAATGGCTCTACTCAGATTGACCATATGGGTTTTTTCTTTTTC 3045
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3046 TTTCTTTTATTCTTCTCCTTCTTTTTTTTTCAGAGGTGGGATGGGTGGAGATTTTTTAAAAATCCCACGTGTGA 3119
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3120 AAGTTTACTGGCTTTATTAGCAAGTTCCTTTTTACTTCAAGCTACTTTTTATAAAAAAGAACATTTTTCCAGTG 3193
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3194 TGGTTTTTAACAGATAATACATTTCTTCCACATTCAGATTAGTATTCGGACATGAATCCATTCTATAAAACACA 3267
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3268 TCGTGTTCATGATAGTGTATATTTTACTACTTTTTGAATGTTAATTTTAAAATAGAAGATGTCCCACTTGCCAT 3341
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3342 TAAATATAGAAGCCAACTTTTTACCTTTTGAAATATGGCTACATTTAAAACAAAATCTCACAGCTCGGTTTTTC 3415
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3416 TTATTTGTTGAGTGCTATTACCAGGAGAAATTCAAATAAATATTCAATTTCATTATGAATTTCATTATTTATTT 3489
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3490 ATAATAGTTTTTCTTTTATAAATAATTTTTCTTTTATAAAACTATTTAATTAAATGAGTGATTTATTTTACGTG 3563
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3564 GATAAAATAACTATCAGTATAAAAATATTCTTTTAGGATATTAAGGACCCTGTTCCCCAGGTGTAACCAGAAAC 3637
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3638 CACTAAGGCACTTAGTGGCCACTTGCTGTATAGAAGCTCAGTTCAGACTGATGCTGAACCCTGGTAAACAACTA 3711
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3712 GCACCTAACCCAGGTAGACTCTGCAGCCCTGGGGTAGCAGACTCTGCTAAGAGTACCAGACTCTGCTAAGAGTA 3785
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3786 CCAGAAGGCTAACTTAGGAGCTGTGAGGGGCCCCTTCCTCTACTTAAGGCTGAATGAACTGGAGAGCTCACTGC 3859
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3860 CCCTGCTCCTGTAAGAAATGAAATGTTGATGGAGACAGATGCCTTCAGACAAAGAGGGCAGTACATTCATAAGA 3933
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3934 GGGAATGGCTAAAAGTTAGCAGAGGAGCTATGCAAATGGGGGTTGAAGGCATGCTTTTTAAGAAGGGTGGATAT 4007
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4008 AAGTAGATGAAAAATACTTTCATCTGTGTTATGAATAATTCAGTATTTCCTCCTGTATCAAGAAGACACGTGTT 4081
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4082 TTAGACACTTAAAATATAAGAACTGCCTTACAGAGTTAGACTGCTGAGAAATGGACCATAGCATATTTATTCTG 4155
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4156 CAAACAAATATGAATGCCTAGGGCCTACTTGATGTAGTGTGCTATGCTTTTTAAACCAAGACTATAAGTAGAAG 4229
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4230 TAAGTCTCATTCTAAGTTTTACTAAAGATTGTGGTGAAAGTTAAGTCTTTTTACTAGTTTTCAATAACTGACAG 4303
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4304 CTGAACTATTTTAATTCAACAAGTTATATCATTATATTGAGGGGCATTTCTTTATGCTTTAAATTCTTACACAG 4377
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4378 ACACATTCCAAATTTTAGAGACATTGTATCTGTCTTTGCATTTCCAGTAATTAGCAGAGTAGATTGCCTGTAGG 4451
Query 1960 ----------------------------------------------- 1959
Sbjct 4452 TACTGGTTAAACATTAGTTGAATAAATTGATGCATTGGACAACTTAA 4498
