Construct: ORF ccsbBroadEn_12996
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018508.1_s300c1, BRDN0000389924
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZFAND4 (93550)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | NM_001282905.1 | 99.8% | 99.6% | 54T>G;131A>C;1377A>G |
| 2 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | NM_001282906.1 | 99.8% | 99.6% | 54T>G;131A>C;1377A>G |
| 3 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_017016940.2 | 98.9% | 98.7% | (many diffs) |
| 4 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_017016941.1 | 98.9% | 98.7% | (many diffs) |
| 5 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_005271842.2 | 96% | 96% | 0_1ins75;56A>C;1302A>G |
| 6 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_005271843.2 | 96% | 96% | 0_1ins75;56A>C;1302A>G |
| 7 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_017016942.1 | 95.1% | 95.1% | (many diffs) |
| 8 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_017016943.1 | 95.1% | 95.1% | (many diffs) |
| 9 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_017016944.1 | 95.1% | 95.1% | (many diffs) |
| 10 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_017016938.2 | 94.3% | 91.2% | (many diffs) |
| 11 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_017016939.2 | 94.3% | 91.2% | (many diffs) |
| 12 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_017016936.2 | 93.5% | 90.4% | (many diffs) |
| 13 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_017016937.2 | 93.5% | 90.4% | (many diffs) |
| 14 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_005271844.4 | 93.2% | 93.2% | 0_1ins132;1245A>G |
| 15 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_024448259.1 | 92.3% | 92.4% | 0_1ins132;214_231del;1263A>G |
| 16 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_024448260.1 | 92.3% | 92.4% | 0_1ins132;214_231del;1263A>G |
| 17 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | NM_001128324.2 | 89.6% | 89.5% | (many diffs) |
| 18 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | NM_174890.4 | 89.6% | 89.5% | (many diffs) |
| 19 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_017016932.1 | 88.9% | 88.8% | (many diffs) |
| 20 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_017016933.2 | 88.9% | 88.8% | (many diffs) |
| 21 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_017016934.1 | 88.9% | 88.8% | (many diffs) |
| 22 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_011540366.2 | 87.2% | 84.3% | (many diffs) |
| 23 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_017016931.1 | 86.5% | 83.6% | (many diffs) |
| 24 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_011540368.1 | 83.8% | 82.7% | (many diffs) |
| 25 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_017016946.2 | 81.7% | 81.7% | 0_1ins357;1020A>G |
| 26 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XR_001747259.1 | 79.2% | (many diffs) | |
| 27 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XM_017016935.1 | 76.2% | 74.2% | (many diffs) |
| 28 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XR_001747260.1 | 46.5% | (many diffs) | |
| 29 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XR_001747265.1 | 44.6% | (many diffs) | |
| 30 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XR_001747261.2 | 44.5% | (many diffs) | |
| 31 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XR_001747263.1 | 43.5% | (many diffs) | |
| 32 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XR_001747262.1 | 41.1% | (many diffs) | |
| 33 | human | 93550 | ZFAND4 | zinc finger AN1-type contai... | XR_001747264.1 | 40.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2025
- ORF length:
- 1959
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA ACTTGAAAAT GATTATTGCT TGAATGATTA CAACATTTCA GAAGGGTGGA 121 CCTTGAAGCT AGTTTTGGCT ATGCGTGGCG GACCTATAAA TACTAGAAGA GTTCCTACAG 181 ACGATCCACT TAGGACGATG GCAGAGTACT TGGATTCCAG TCGAGTTGAG GTCTGGGAGA 241 AGACCTCCTG CAGCAAACAA GTTACATTTT TGGTATACCA AGAAGGAGAT CAATTGAATT 301 TCTTTCCTGC AGTAGATAGG GGAGATGGCA CTTTAACACC GTTATCTGAC TCTTCAAAGA 361 AAATAGATTT TCATTTGCAT GTCCTACGGA GAAAAGGAGA ACATCGTATG AGTGGTGGTT 421 CTATGTATAA TTCAGATACA GATGAGGATG AAGAAACTGA GCCTTCTTCT TCTGGGCAAC 481 AGATAATTGA AAATTCAATA ACTATGAATA AGATGAAGCT GCTGAAGGCT AAGATGAAGA 541 ACATGAATCT CAGCAAAAAG CCTAAGAAAG CTGTCAAGAT AAAACCTCAC CCACCTGTAG 601 CTCCTCGACC TTCTAGTGGT TCCACTGCAC CATCTCGCCA CCGATTGTTA AGGGTCCTCC 661 CCAACATTGG TCAATCTTGT TCACCTGCTT TTGGGAATGC ATATCCGCCC GAAATCTCCA 721 GGAATGGAAT TTCAAGTTTG GCAACTCAAC TCTCTGCTGA GAGATACATA TCTTCTATCA 781 CTGGTGAATT TCTTAAGGAA GATAATAGCT GGGAGAATAA CACACTGTCT CACTTCAGTA 841 GCAACGTCAA ACTACCTCCT CAGATACCCC ATTTGGAGTT GGGAAATGAC CAGGAGCTTG 901 CTGACTCTGT TCTCCATCTT GGATCATCCC TGCCTAGGCA AACAAAACAT TTTTTAGGAA 961 ACTTGCCATC TAGTAATGGG AACATTGTCT TACCTTCAGA AGAATGTGTA ACCGAACAAT 1021 CACTTCTACC TAAAGTGGGC TCACTGGCTT CATTTGCAGA AGGAAATGCT GATGAACAGA 1081 GCAGCGGCTT AGAAGGTGCG TGCAAAGTGA ATCTGGAGTT GCTACTCACT AATGCTGACA 1141 AAGGGTTGAA AGCTCCAGAG CAGCATCTCA AGCATGTTGC AGGAGTGCTG AATGGGGAAT 1201 CAGTAGAGAC TTCAGTTCTT AACTACCGGG AATTAAGTCC TCACAAGAAT AGACTCTTGT 1261 CACCTCTTCG CTGTTCTGCA CCAATGTCGC TACATAATTC TCTGGTGAAA CCAGAGAGAC 1321 AGTCCAAATG TTTTGAGTTT GGGAAGCTAC AGCCTTCTTC TTCTCAGTCA CTGGATGTTC 1381 AAAACATAAC TGATTCTTCT TTCTCTAGGA CTACTTGCTT TCAAGGTGTT AAAGTTGATT 1441 CGCTTGGGAA AAGATCTGAT GTTATTTCCA AAGTTGAGGC TCGGGATATC ACAGAAATGA 1501 CTAACAAGGC TTCCAAAGAG CCTGTTGGTT GTGTAAATAA TATCAGTTTT CTTGCCTCAC 1561 TGGCCGGGAG CACAAGCAGA AATAGATTAC AGAGCACACG TGGGGCAGGC AGGCTTCAGA 1621 ACTCTGGAAC TGGGCTGTCT ACAAACCTCC AGCATTTTCA GGAAGAAAAC TTTAGGAAAA 1681 GTTCTCCCCA GTTAGAACAT ACAGGAGTTT TTTTGTCTAC CCATGGTGTT GGAATGAATG 1741 GAAATAATGC AGCAGCAGGG AAAAGCGTAG GAGAATGTAC TACTCATCAC CTCCCACCTG 1801 TGAAAGCCCC TCTTCAGACA AAGAAGAAAA CAACAAATCA TTGTTTTCTT TGTGGAAAGA 1861 AAACAGGACT GGCTAGTAGC TACGAATGCA GATGTGGAAA CAACTTCTGT GCATCTCATC 1921 GTTATGCAGA AACTCATGGC TGTACCTATG ATTACAAGAG TGCAGGGAGG AGATACTTGC 1981 ACGAGGCAAA TCCTGTGGTT AATGCACCAA AGCTTCCAAA AATCTACCCA ACTTTCTTGT 2041 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c