Construct: ORF ccsbBroadEn_12996

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018508.1_s300c1, BRDN0000389924
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZFAND4 (93550)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 93550 ZFAND4 zinc finger AN1-type contai... NM_001282905.1 99.8% 99.6% 54T>G;131A>C;1377A>G
2 human 93550 ZFAND4 zinc finger AN1-type contai... NM_001282906.1 99.8% 99.6% 54T>G;131A>C;1377A>G
3 human 93550 ZFAND4 zinc finger AN1-type contai... XM_017016940.2 98.9% 98.7% (many diffs)
4 human 93550 ZFAND4 zinc finger AN1-type contai... XM_017016941.1 98.9% 98.7% (many diffs)
5 human 93550 ZFAND4 zinc finger AN1-type contai... XM_005271842.2 96% 96% 0_1ins75;56A>C;1302A>G
6 human 93550 ZFAND4 zinc finger AN1-type contai... XM_005271843.2 96% 96% 0_1ins75;56A>C;1302A>G
7 human 93550 ZFAND4 zinc finger AN1-type contai... XM_017016942.1 95.1% 95.1% (many diffs)
8 human 93550 ZFAND4 zinc finger AN1-type contai... XM_017016943.1 95.1% 95.1% (many diffs)
9 human 93550 ZFAND4 zinc finger AN1-type contai... XM_017016944.1 95.1% 95.1% (many diffs)
10 human 93550 ZFAND4 zinc finger AN1-type contai... XM_017016938.2 94.3% 91.2% (many diffs)
11 human 93550 ZFAND4 zinc finger AN1-type contai... XM_017016939.2 94.3% 91.2% (many diffs)
12 human 93550 ZFAND4 zinc finger AN1-type contai... XM_017016936.2 93.5% 90.4% (many diffs)
13 human 93550 ZFAND4 zinc finger AN1-type contai... XM_017016937.2 93.5% 90.4% (many diffs)
14 human 93550 ZFAND4 zinc finger AN1-type contai... XM_005271844.4 93.2% 93.2% 0_1ins132;1245A>G
15 human 93550 ZFAND4 zinc finger AN1-type contai... XM_024448259.1 92.3% 92.4% 0_1ins132;214_231del;1263A>G
16 human 93550 ZFAND4 zinc finger AN1-type contai... XM_024448260.1 92.3% 92.4% 0_1ins132;214_231del;1263A>G
17 human 93550 ZFAND4 zinc finger AN1-type contai... NM_001128324.2 89.6% 89.5% (many diffs)
18 human 93550 ZFAND4 zinc finger AN1-type contai... NM_174890.4 89.6% 89.5% (many diffs)
19 human 93550 ZFAND4 zinc finger AN1-type contai... XM_017016932.1 88.9% 88.8% (many diffs)
20 human 93550 ZFAND4 zinc finger AN1-type contai... XM_017016933.2 88.9% 88.8% (many diffs)
21 human 93550 ZFAND4 zinc finger AN1-type contai... XM_017016934.1 88.9% 88.8% (many diffs)
22 human 93550 ZFAND4 zinc finger AN1-type contai... XM_011540366.2 87.2% 84.3% (many diffs)
23 human 93550 ZFAND4 zinc finger AN1-type contai... XM_017016931.1 86.5% 83.6% (many diffs)
24 human 93550 ZFAND4 zinc finger AN1-type contai... XM_011540368.1 83.8% 82.7% (many diffs)
25 human 93550 ZFAND4 zinc finger AN1-type contai... XM_017016946.2 81.7% 81.7% 0_1ins357;1020A>G
26 human 93550 ZFAND4 zinc finger AN1-type contai... XR_001747259.1 79.2% (many diffs)
27 human 93550 ZFAND4 zinc finger AN1-type contai... XM_017016935.1 76.2% 74.2% (many diffs)
28 human 93550 ZFAND4 zinc finger AN1-type contai... XR_001747260.1 46.5% (many diffs)
29 human 93550 ZFAND4 zinc finger AN1-type contai... XR_001747265.1 44.6% (many diffs)
30 human 93550 ZFAND4 zinc finger AN1-type contai... XR_001747261.2 44.5% (many diffs)
31 human 93550 ZFAND4 zinc finger AN1-type contai... XR_001747263.1 43.5% (many diffs)
32 human 93550 ZFAND4 zinc finger AN1-type contai... XR_001747262.1 41.1% (many diffs)
33 human 93550 ZFAND4 zinc finger AN1-type contai... XR_001747264.1 40.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2025
ORF length:
1959
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA ACTTGAAAAT GATTATTGCT TGAATGATTA CAACATTTCA GAAGGGTGGA
121CCTTGAAGCT AGTTTTGGCT ATGCGTGGCG GACCTATAAA TACTAGAAGA GTTCCTACAG
181ACGATCCACT TAGGACGATG GCAGAGTACT TGGATTCCAG TCGAGTTGAG GTCTGGGAGA
241AGACCTCCTG CAGCAAACAA GTTACATTTT TGGTATACCA AGAAGGAGAT CAATTGAATT
301TCTTTCCTGC AGTAGATAGG GGAGATGGCA CTTTAACACC GTTATCTGAC TCTTCAAAGA
361AAATAGATTT TCATTTGCAT GTCCTACGGA GAAAAGGAGA ACATCGTATG AGTGGTGGTT
421CTATGTATAA TTCAGATACA GATGAGGATG AAGAAACTGA GCCTTCTTCT TCTGGGCAAC
481AGATAATTGA AAATTCAATA ACTATGAATA AGATGAAGCT GCTGAAGGCT AAGATGAAGA
541ACATGAATCT CAGCAAAAAG CCTAAGAAAG CTGTCAAGAT AAAACCTCAC CCACCTGTAG
601CTCCTCGACC TTCTAGTGGT TCCACTGCAC CATCTCGCCA CCGATTGTTA AGGGTCCTCC
661CCAACATTGG TCAATCTTGT TCACCTGCTT TTGGGAATGC ATATCCGCCC GAAATCTCCA
721GGAATGGAAT TTCAAGTTTG GCAACTCAAC TCTCTGCTGA GAGATACATA TCTTCTATCA
781CTGGTGAATT TCTTAAGGAA GATAATAGCT GGGAGAATAA CACACTGTCT CACTTCAGTA
841GCAACGTCAA ACTACCTCCT CAGATACCCC ATTTGGAGTT GGGAAATGAC CAGGAGCTTG
901CTGACTCTGT TCTCCATCTT GGATCATCCC TGCCTAGGCA AACAAAACAT TTTTTAGGAA
961ACTTGCCATC TAGTAATGGG AACATTGTCT TACCTTCAGA AGAATGTGTA ACCGAACAAT
1021CACTTCTACC TAAAGTGGGC TCACTGGCTT CATTTGCAGA AGGAAATGCT GATGAACAGA
1081GCAGCGGCTT AGAAGGTGCG TGCAAAGTGA ATCTGGAGTT GCTACTCACT AATGCTGACA
1141AAGGGTTGAA AGCTCCAGAG CAGCATCTCA AGCATGTTGC AGGAGTGCTG AATGGGGAAT
1201CAGTAGAGAC TTCAGTTCTT AACTACCGGG AATTAAGTCC TCACAAGAAT AGACTCTTGT
1261CACCTCTTCG CTGTTCTGCA CCAATGTCGC TACATAATTC TCTGGTGAAA CCAGAGAGAC
1321AGTCCAAATG TTTTGAGTTT GGGAAGCTAC AGCCTTCTTC TTCTCAGTCA CTGGATGTTC
1381AAAACATAAC TGATTCTTCT TTCTCTAGGA CTACTTGCTT TCAAGGTGTT AAAGTTGATT
1441CGCTTGGGAA AAGATCTGAT GTTATTTCCA AAGTTGAGGC TCGGGATATC ACAGAAATGA
1501CTAACAAGGC TTCCAAAGAG CCTGTTGGTT GTGTAAATAA TATCAGTTTT CTTGCCTCAC
1561TGGCCGGGAG CACAAGCAGA AATAGATTAC AGAGCACACG TGGGGCAGGC AGGCTTCAGA
1621ACTCTGGAAC TGGGCTGTCT ACAAACCTCC AGCATTTTCA GGAAGAAAAC TTTAGGAAAA
1681GTTCTCCCCA GTTAGAACAT ACAGGAGTTT TTTTGTCTAC CCATGGTGTT GGAATGAATG
1741GAAATAATGC AGCAGCAGGG AAAAGCGTAG GAGAATGTAC TACTCATCAC CTCCCACCTG
1801TGAAAGCCCC TCTTCAGACA AAGAAGAAAA CAACAAATCA TTGTTTTCTT TGTGGAAAGA
1861AAACAGGACT GGCTAGTAGC TACGAATGCA GATGTGGAAA CAACTTCTGT GCATCTCATC
1921GTTATGCAGA AACTCATGGC TGTACCTATG ATTACAAGAG TGCAGGGAGG AGATACTTGC
1981ACGAGGCAAA TCCTGTGGTT AATGCACCAA AGCTTCCAAA AATCTACCCA ACTTTCTTGT
2041ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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