Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_12996
- Subject:
- XR_001747263.1
- Aligned Length:
- 4346
- Identities:
- 1894
- Gaps:
- 2443
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGACGCCGGCCGCTGCTGCCCGGGGACCGGAGCGGCGGGCCGCCTTTGCCCAGGACACACGCTCTGGCGTTTGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCTTTGGGCGTGACGCCAGCTTCAACGGGTACGCGGCTTTCCCGACGGGTGCTGATCTCCGAGTCGCTGTTGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CACGCGGACTGCTGTCCTCCAGATTCAGGCCGGTGGGTCTGGGGAGCCCGGATTGGTCTTGGAGGAGCAACGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGCGCAGGTGACTCGGTGGCCTCAAGTGTGTACAAAACTCAAAACATGAACAACAATATATATTACCAATCTTC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAACCTGGTTTGCCTAGAACTGGAATACAGTTGCCTGCGACATATTTTAGAAGAACTAGAAAAGTCAAAGTAAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGATAACAGAAAAGAGCCTCCATTCTTCAATGATGATAACATGGGACCATTTTACTACAGACTTCATTTCTGTG 444
Query 1 ------------------------------ATGGAAC--------------------------TTGAAAATGAT 18
.|||||| ||||||.|| |
Sbjct 445 ATACCATGGAGCTCTTCATTGAAACATTAACTGGAACATGTTTTGAGCTGAGAGTTTCACCTTTTGAAACTG-T 517
Query 19 TATTGCT-TGAATG-----ATTACAA---------CATTTCAGAAGGGTGGACCTTGAAGCTAGTTTTGGCTAT 77
||||.|| ||||.| |||..|| |||||||||||||||.|||||||||||||||||||||||
Sbjct 518 TATTTCTGTGAAAGCAAAAATTCGAAGATTGGAAGCATTTCAGAAGGGTGTACCTTGAAGCTAGTTTTGGCTAT 591
Query 78 GCGTGGCGGACCTATAAATACTAGAAGAGTTCCTACAGACGATCCACTTAGGACGATGGCAGAGTACTTGGATT 151
|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 592 GCGTGGCGGACCTATAAATACTAGAAGAGTTCCTACAGACGATCCACTTAGGAAGATGGCAGAGTACTTGGATT 665
Query 152 CCAGTCGAGTTGAGGTCTGGGAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGGTATACCAAGAAGGAGAT 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 CCAGTCGAGTTGAGGTCTGGGAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGGTATACCAAGAAGGAGAT 739
Query 226 CAATTGAATTTCTTTCCTGCAGTAGATAGGGGAGATGGCACTTTAACACCGTTATCTGACTCTTCAAAGAAAAT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 CAATTGAATTTCTTTCCTGCAGTAGATAGGGGAGATGGCACTTTAACACCGTTATCTGACTCTTCAAAGAAAAT 813
Query 300 AGATTTTCATTTGCATGTCCTACGGAGAAAAGGAGAACATCGTATGAGTGGTGGTTCTATGTATAATTCAGATA 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 AGATTTTCATTTGCATGTCCTACGGAGAAAAGGAGAACATCGTATGAGTGGTGGTTCTATGTATAATTCAGATA 887
Query 374 CAGATGAGGATGAAGAAACTGAGCCTTCTTCTTCTGGGCAACAGATAATTGAAAATTCAATAACTATGAATAAG 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 CAGATGAGGATGAAGAAACTGAGCCTTCTTCTTCTGGGCAACAGATAATTGAAAATTCAATAACTATGAATAAG 961
Query 448 ATGAAGCTGCTGAAGGCTAAGATGAAGAACATGAATCTCAGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACC 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 ATGAAGCTGCTGAAGGCTAAGATGAAGAACATGAATCTCAGCAAAAAGCCTAAGAAAGCTGTCAAGATAAAACC 1035
Query 522 TCACCCACCTGTAGCTCCTCGACCTTCTAGTGGTTCCACTGCACCATCTCGCCACCGATTGTTAAGGGTCCTCC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 TCACCCACCTGTAGCTCCTCGACCTTCTAGTGGTTCCACTGCACCATCTCGCCACCGATTGTTAAGGGTCCTCC 1109
Query 596 CCAACATTGGTCAATCTTGTTCACCTGCTTTTGGGAATGCATATCCGCCCGAAATCTCCAGGAATGGAATTTCA 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 CCAACATTGGTCAATCTTGTTCACCTGCTTTTGGGAATGCATATCCGCCCGAAATCTCCAGGAATGGAATTTCA 1183
Query 670 AGTTTGGCAACTCAACTCTCTGCTGAGAGATACATATCTTCTATCACTGGTGAATTTCTTAAGGAAGATAATAG 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 AGTTTGGCAACTCAACTCTCTGCTGAGAGATACATATCTTCTATCACTGGTGAATTTCTTAAGGAAGATAATAG 1257
Query 744 CTGGGAGAATAACACACTGTCTCACTTCAGTAGCAACGTCAAACTACCTCCTCAGATACCCCATTTGGAGTTGG 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTGGGAGAATAACACACTGTCTCACTTCAGTAGCAACGTCAAACTACCTCCTCAGATACCCCATTTGGAGTTGG 1331
Query 818 GAAATGACCAGGAGCTTGCTGACTCTGTTCTCCATCTTGGATCATCCCTGCCTAGGCAAACAAAACATTTTTTA 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 GAAATGACCAGGAGCTTGCTGACTCTGTTCTCCATCTTGGATCATCCCTGCCTAGGCAAACAAAACATTTTTTA 1405
Query 892 GGAAACTTGCCATCTAGTAATGGGAACATTGTCTTACCTTCAGAAGAATGTGTAACCGAACAATCACTTCTACC 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 GGAAACTTGCCATCTAGTAATGGGAACATTGTCTTACCTTCAGAAGAATGTGTAACCGAACAATCACTTCTACC 1479
Query 966 TAAAGTGGGCTCACTGGCTTCATTTGCAGAAGGAAATGCTGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCA 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 TAAAGTGGGCTCACTGGCTTCATTTGCAGAAGGAAATGCTGATGAACAGAGCAGCGGCTTAGAAGGTGCGTGCA 1553
Query 1040 AAGTGAATCTGGAGTTGCTACTCACTAATGCTGACAAAGGGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTT 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 AAGTGAATCTGGAGTTGCTACTCACTAATGCTGACAAAGGGTTGAAAGCTCCAGAGCAGCATCTCAAGCATGTT 1627
Query 1114 GCAGGAGTGCTGAATGGGGAATCAGTAGAGACTTCAGTTCTTAACTACCGGGAATTAAGTCCTCACAAGAATAG 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 GCAGGAGTGCTGAATGGGGAATCAGTAGAGACTTCAGTTCTTAACTACCGGGAATTAAGTCCTCACAAGAATAG 1701
Query 1188 ACTCTTGTCACCTCTTCGCTGTTCTGCACCAATGTCGCTACATAATTCTCTGGTGAAACCAGAGAGACAGTCCA 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 ACTCTTGTCACCTCTTCGCTGTTCTGCACCAATGTCGCTACATAATTCTCTGGTGAAACCAGAGAGACAGTCCA 1775
Query 1262 AATGTTTTGAGTTTGGGAAGCTACAGCCTTCTTCTTCTCAGTCACTGGATGTTCAAAACATAACTGATTCTTCT 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 AATGTTTTGAGTTTGGGAAGCTACAGCCTTCTTCTTCTCAGTCACTGGATGTTCAAAACATAACTGATTCTTCT 1849
Query 1336 TTCTCTAGGACTACTTGCTTTCAAGGTGTTAAAGTTGATTCGCTTGGGAAAAGATCTGATGTTATTTCCAAAGT 1409
|||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct 1850 TTCTCTAGGACTACTTGCTTTCAAGGTGTTAAAGTTGATTCACTTGGGAAAAGATCTGATGTTATTTCCAAAGT 1923
Query 1410 TGAGGCTCGGGATATCACAGAAATGACTAACAAGGCTTCCAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTT 1483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 TGAGGCTCGGGATATCACAGAAATGACTAACAAGGCTTCCAAAGAGCCTGTTGGTTGTGTAAATAATATCAGTT 1997
Query 1484 TTCTTGCCTCACTGGCCGGGAGCACAAGCAGAAATAGATTACAGAGCACACGTGGGGCAGGCAGGCTTCAGAAC 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1998 TTCTTGCCTCACTGGCCGGGAGCACAAGCAGAAATAGATTACAGAGCACACGTGGGGCAGGCAGGCTTCAGAAC 2071
Query 1558 TCTGGAACTGGGCTGTCTACAAACCTCCAGCATTTTCAGGAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGA 1631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072 TCTGGAACTGGGCTGTCTACAAACCTCCAGCATTTTCAGGAAGAAAACTTTAGGAAAAGTTCTCCCCAGTTAGA 2145
Query 1632 ACATACAGGAGTTTTTTTGTCTACCCATGGTGTTGGAATGAATGGAAATAATGCAGCAGCAGGGAAAAGCGTAG 1705
|||||||||||||||||| |
Sbjct 2146 ACATACAGGAGTTTTTTT-------------------------------------------------------G 2164
Query 1706 GAGAATGTACTACTCATCACCTCCCACCTGTGAAAGCCCCTCTTCAGACAAAGAAGAAAACAACAAATCATTGT 1779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2165 GAGAATGTACTACTCATCACCTCCCACCTGTGAAAGCCCCTCTTCAGACAAAGAAGAAAACAACAAATCATTGT 2238
Query 1780 TTTCTTTGTGGAAAGAAAACAGGACTGGCTAGTAGCTACGAATGCAGATGTGGAAACAACTTCTGTGCATCTCA 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2239 TTTCTTTGTGGAAAGAAAACAGGACTGGCTAGTAGCTACGAATGCAGATGTGGAAACAACTTCTGTGCATCTCA 2312
Query 1854 TCGTTATGCAGAAACTCATGGCTGTACCTATGATTACAAGAGTGCAGGGAGGAGATACTTGCACGAGGCAAATC 1927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2313 TCGTTATGCAGAAACTCATGGCTGTACCTATGATTACAAGAGTGCAGGGAGGAGATACTTGCACGAGGCAAATC 2386
Query 1928 CTGTGGTTAATGCACCAAAGCTTCCAAAAATC------------------------------------------ 1959
||||||||||||||||||||||||||||||||
Sbjct 2387 CTGTGGTTAATGCACCAAAGCTTCCAAAAATCTAACTCTTCCTCTACATCTTACTGTTCTGCCCGGGATTCGTA 2460
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2461 TTATAATGACAGAAGAAATGTTGTTTAGACTATTATTTTTGTTCGACTCTAAAAGATTTGCCAAATAACAAAAG 2534
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2535 CATACAATGCATACTGTTGGAGAACAAGAATGCTACTGTATTTTACATCTTTATTTCTTGGTGAAACAAAAGTT 2608
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2609 TTAAAAGTAGTTTTAACAACTTTACACTGGAATGATTTAGCTTTGTTATTGCATGTCTTGTGTTAAGTGTTTTG 2682
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2683 TATATGATATTGCAGTTTTACTAGGCAAATCTTCAAAAGATGCACTTTAGGAAACGAAATATTTCCTAAATAAC 2756
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2757 CAGGCTTCCACATTGTACAGAATGAGCAGTCATGTAATGAATGGCTCTACTCAGATTGACCATATGGGTTTTTT 2830
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2831 CTTTTTCTTTCTTTTATTCTTCTCCTTCTTTTTTTTTCAGAGGTGGGATGGGTGGAGATTTTTTAAAAATCCCA 2904
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2905 CGTGTGAAAGTTTACTGGCTTTATTAGCAAGTTCCTTTTTACTTCAAGCTACTTTTTATAAAAAAGAACATTTT 2978
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 2979 TCCAGTGTGGTTTTTAACAGATAATACATTTCTTCCACATTCAGATTAGTATTCGGACATGAATCCATTCTATA 3052
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3053 AAACACATCGTGTTCATGATAGTGTATATTTTACTACTTTTTGAATGTTAATTTTAAAATAGAAGATGTCCCAC 3126
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3127 TTGCCATTAAATATAGAAGCCAACTTTTTACCTTTTGAAATATGGCTACATTTAAAACAAAATCTCACAGCTCG 3200
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3201 GTTTTTCTTATTTGTTGAGTGCTATTACCAGGAGAAATTCAAATAAATATTCAATTTCATTATGAATTTCATTA 3274
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3275 TTTATTTATAATAGTTTTTCTTTTATAAATAATTTTTCTTTTATAAAACTATTTAATTAAATGAGTGATTTATT 3348
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3349 TTACGTGGATAAAATAACTATCAGTATAAAAATATTCTTTTAGGATATTAAGGACCCTGTTCCCCAGGTGTAAC 3422
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3423 CAGAAACCACTAAGGCACTTAGTGGCCACTTGCTGTATAGAAGCTCAGTTCAGACTGATGCTGAACCCTGGTAA 3496
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3497 ACAACTAGCACCTAACCCAGGTAGACTCTGCAGCCCTGGGGTAGCAGACTCTGCTAAGAGTACCAGACTCTGCT 3570
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3571 AAGAGTACCAGAAGGCTAACTTAGGAGCTGTGAGGGGCCCCTTCCTCTACTTAAGGCTGAATGAACTGGAGAGC 3644
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3645 TCACTGCCCCTGCTCCTGTAAGAAATGAAATGTTGATGGAGACAGATGCCTTCAGACAAAGAGGGCAGTACATT 3718
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3719 CATAAGAGGGAATGGCTAAAAGTTAGCAGAGGAGCTATGCAAATGGGGGTTGAAGGCATGCTTTTTAAGAAGGG 3792
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3793 TGGATATAAGTAGATGAAAAATACTTTCATCTGTGTTATGAATAATTCAGTATTTCCTCCTGTATCAAGAAGAC 3866
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3867 ACGTGTTTTAGACACTTAAAATATAAGAACTGCCTTACAGAGTTAGACTGCTGAGAAATGGACCATAGCATATT 3940
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 3941 TATTCTGCAAACAAATATGAATGCCTAGGGCCTACTTGATGTAGTGTGCTATGCTTTTTAAACCAAGACTATAA 4014
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4015 GTAGAAGTAAGTCTCATTCTAAGTTTTACTAAAGATTGTGGTGAAAGTTAAGTCTTTTTACTAGTTTTCAATAA 4088
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4089 CTGACAGCTGAACTATTTTAATTCAACAAGTTATATCATTATATTGAGGGGCATTTCTTTATGCTTTAAATTCT 4162
Query 1960 -------------------------------------------------------------------------- 1959
Sbjct 4163 TACACAGACACATTCCAAATTTTAGAGACATTGTATCTGTCTTTGCATTTCCAGTAATTAGCAGAGTAGATTGC 4236
Query 1960 ------------------------------------------------------ 1959
Sbjct 4237 CTGTAGGTACTGGTTAAACATTAGTTGAATAAATTGATGCATTGGACAACTTAA 4290
