Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13021
Subject:
NM_001352315.2
Aligned Length:
1956
Identities:
564
Gaps:
1392

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGTTGCTTTTCGTGGAGGTAGCATCTAAAGGAACTGGTTTAAATCCTAATGCCAAAGTATGGCAAGAAATTGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCCTGGAAATACTGATGCCACCCCAGTAACTCATGGAACTGAAAGCTCTTGGCATGAAATAGCAGCTACATCAG  148

Query    1  -----------------------------------------------------------ATGTATTCTTCATCT  15
                                                                       |||||||||||||||
Sbjct  149  GTGCTCATCCTGAGGGTAATGCAGAGCTCTCAGAAGATATATGTAAAGAATATGAAGTAATGTATTCTTCATCT  222

Query   16  TGTGAAACCACAAGAAATACTACAGGCATTGAAGAATCAACTGATGGGATGATTTTAGGACCAGAAGATCTGAG  89
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TGTGAAACCACAAGAAATACTACAGGCATTGAAGAATCAACTGATGGGATGATTTTAGGACCAGAAGATCTGAG  296

Query   90  TTACCAAATATATGATGTTTCCGGAGAAAGCAATTCAGCAGTTTCTACAGAAGACCTAAAAGAATGTCTGAAGA  163
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TTACCAAATATATGATGTTTCCGGAGAAAGCAATTCAGCAGTTTCTACAGAAGACCTAAAAGAATGTCTGAAGA  370

Query  164  AACAATTAGAATTCTGTTTTTCACGAGAAAATTTGTCAAAGGATCTTTACTTGATATCTCAAATGGATAGTGAT  237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AACAATTAGAATTCTGTTTTTCACGAGAAAATTTGTCAAAGGATCTTTACTTGATATCTCAAATGGATAGTGAT  444

Query  238  CAGTTCATCCCAATTTGGACAGTTGCCAACATGGAAGAAATAAAAAAGTTGACTACAGACCCTGATCTAATTCT  311
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CAGTTCATCCCAATTTGGACAGTTGCCAACATGGAAGAAATAAAAAAGTTGACTACAGACCCTGATCTAATTCT  518

Query  312  TGAAGTGTTAAGATCTTCTCCCATGGTACAAGTTGATGAGAAGGGTGAGAAAGTGAGACCAAGTCATAAGCGTT  385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGAAGTGTTAAGATCTTCTCCCATGGTACAAGTTGATGAGAAGGGTGAGAAAGTGAGACCAAGTCATAAGCGTT  592

Query  386  GTATTGTAATTCTTAGAGAGATTCCTGAAACAACACCAATAGAGGAAGTGAAAGGTTTGTTCAAAAGTGAAAAC  459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GTATTGTAATTCTTAGAGAGATTCCTGAAACAACACCAATAGAGGAAGTGAAAGGTTTGTTCAAAAGTGAAAAC  666

Query  460  TGCCCCAAAGTGATAAGCTGTGAGTTTGCACACAATAGCAACTGGTATATCACTTTCCAGTCAGACACAGATGC  533
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TGCCCCAAAGTGATAAGCTGTGAGTTTGCACACAATAGCAACTGGTATATCACTTTCCAGTCAGACACAGATGC  740

Query  534  ACAACAGGCTTTT--ATACTTAAGAGAAGAAGT-----------------------------------------  564
            |||||||||||||  ||||||||||||||||||                                         
Sbjct  741  ACAACAGGCTTTTAAATACTTAAGAGAAGAAGTTAAAACATTTCAGGGCAAGCCAATTATGGCTCCCTTTCCCA  814

Query  565  --------------------------------------------------------------------------  564
                                                                                      
Sbjct  815  ATGGTAGTTTTGTGAATGGCTTTAATTCGCCAGGATCTTATAAAACAAATGCTGCTGCTATGAATATGGGTCGA  888

Query  565  --------------------------------------------------------------------------  564
                                                                                      
Sbjct  889  CCATTCCAAAAAAATCGTGTGAAGCCTCAGTTTAGGTCATCTGGTGGTTCAGAACACTCAACAGAGGGCTCTGT  962

Query  565  --------------------------------------------------------------------------  564
                                                                                      
Sbjct  963  ATCCTTGGGGGATGGACAGTTGAACAGATATAGTTCAAGAAACTTTCCAGCTGAACGGCATAACCCCACAGTAA  1036

Query  565  --------------------------------------------------------------------------  564
                                                                                      
Sbjct 1037  CTGGGCATCAGGAGCAAACTTACCTTCAGAAGGAGACTTCCACTTTGCAGGTGGAACAGAATGGGGACTATGGT  1110

Query  565  --------------------------------------------------------------------------  564
                                                                                      
Sbjct 1111  AGGGGCAGGAGAACTCTCTTCAGAGGTCGAAGACGACGAGAAGATGACAGGATCTCAAGACCTCATCCTTCAAC  1184

Query  565  --------------------------------------------------------------------------  564
                                                                                      
Sbjct 1185  AGCTGAATCAAAGGCTCCAACACCAAAGTTTGACTTATTAGCCTCAAATTTTCCACCTTTACCTGGAAGTTCAT  1258

Query  565  --------------------------------------------------------------------------  564
                                                                                      
Sbjct 1259  CAAGAATGCCAGGTGAACTCGTTTTGGAGAATAGGATGTCTGATGTTGTTAAAGGTGTCTACAAAGAAAAGGAT  1332

Query  565  --------------------------------------------------------------------------  564
                                                                                      
Sbjct 1333  AATGAAGAGTTGACAATTAGTTGCCCAGTGCCTGCAGATGAGCAGACAGAATGCACTTCTGCCCAGCAACTCAA  1406

Query  565  --------------------------------------------------------------------------  564
                                                                                      
Sbjct 1407  TATGAGTACCAGTTCTCCATGTGCTGCTGAGCTTACTGCATTAAGCACAACTCAGCAAGAAAAGGATCTAATAG  1480

Query  565  --------------------------------------------------------------------------  564
                                                                                      
Sbjct 1481  AAGATTCCTCTGTTCAGAAGGATGGTCTCAATCAGACAACTATACCAGTTTCTCCTCCAAGTACTACAAAGCCA  1554

Query  565  --------------------------------------------------------------------------  564
                                                                                      
Sbjct 1555  TCGAGGGCAAGTACTGCTTCACCATGTAATAATAACATAAATGCAGCTACAGCTGTGGCTCTACAGGAACCCCG  1628

Query  565  --------------------------------------------------------------------------  564
                                                                                      
Sbjct 1629  AAAGTTAAGTTATGCTGAAGTGTGCCAGAAGCCCCCTAAAGAGCCATCTTCAGTTCTTGTGCAGCCACTACGGG  1702

Query  565  --------------------------------------------------------------------------  564
                                                                                      
Sbjct 1703  AACTTCGCTCCAATGTGGTGTCTCCCACCAAAAATGAAGACAATGGAGCTCCTGAGAACTCCGTTGAGAAACCA  1776

Query  565  --------------------------------------------------------------------------  564
                                                                                      
Sbjct 1777  CATGAGAAGCCAGAAGCAAGGGCTAGTAAGGATTATTCTGGCTTCCGAGGCAATATAATCCCCAGGGGAGCAGC  1850

Query  565  --------------------------------------------------------------------------  564
                                                                                      
Sbjct 1851  AGGAAAAATCAGGGAACAGAGACGCCAGTTTAGCCATAGGGCTATACCTCAGGGAGTGACTCGACGTAATGGCA  1924

Query  565  --------------------------------  564
                                            
Sbjct 1925  AAGAGCAATATGTGCCACCCAGATCACCAAAG  1956

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