Construct: ORF ccsbBroadEn_13021

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006262.1_s300c1, BRDN0000390108
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LARP4 (113251)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 113251 LARP4 La ribonucleoprotein 4 NM_001352326.2 62% 60.3% 1_210del;757_758delAA;777_909del
2 human 113251 LARP4 La ribonucleoprotein 4 NM_001352325.2 50.2% 48.9% 1_210del;757_758delAA;777_1122del
3 human 113251 LARP4 La ribonucleoprotein 4 NM_001352304.1 50.1% 48.8% 547_548delAA;567_1125del
4 human 113251 LARP4 La ribonucleoprotein 4 NM_001352324.1 50.1% 48.8% 547_548delAA;567_1125del
5 human 113251 LARP4 La ribonucleoprotein 4 NM_001170804.1 42.2% 41.1% 1_210del;757_758delAA;777_1335del
6 human 113251 LARP4 La ribonucleoprotein 4 NM_001352322.2 38.6% 37.5% 1_210del;757_758delAA;777_1461del
7 human 113251 LARP4 La ribonucleoprotein 4 NM_001352323.2 38.6% 37.5% 1_210del;757_758delAA;777_1461del
8 human 113251 LARP4 La ribonucleoprotein 4 XM_024448824.1 38.5% 37.5% 547_548delAA;567_1464del
9 human 113251 LARP4 La ribonucleoprotein 4 XM_024448826.1 37.9% 36.9% 1_234del;781_782delAA;801_1485del
10 human 113251 LARP4 La ribonucleoprotein 4 XM_024448827.1 37.9% 36.9% 1_234del;781_782delAA;801_1485del
11 human 113251 LARP4 La ribonucleoprotein 4 NM_001352321.2 33.6% 32.7% 1_210del;757_758delAA;777_1674del
12 human 113251 LARP4 La ribonucleoprotein 4 NM_001352320.2 33.3% 32.5% 547_548delAA;567_1689del
13 human 113251 LARP4 La ribonucleoprotein 4 XM_024448825.1 33.2% 32.3% 1_234del;781_782delAA;801_1698del
14 human 113251 LARP4 La ribonucleoprotein 4 NM_001170803.2 32.3% 31.4% 1_210del;757_758delAA;777_1746del
15 human 113251 LARP4 La ribonucleoprotein 4 NM_001352316.2 32.2% 31.3% 547_548delAA;567_1749del
16 human 113251 LARP4 La ribonucleoprotein 4 NM_001352317.2 32.2% 31.3% 547_548delAA;567_1749del
17 human 113251 LARP4 La ribonucleoprotein 4 NM_001352318.2 32.2% 31.3% 547_548delAA;567_1749del
18 human 113251 LARP4 La ribonucleoprotein 4 XM_017018757.1 32.2% 31.3% 547_548delAA;567_1749del
19 human 113251 LARP4 La ribonucleoprotein 4 XM_024448823.1 32.2% 31.3% 547_548delAA;567_1749del
20 human 113251 LARP4 La ribonucleoprotein 4 NM_001352319.2 32% 31.2% 111_112insGGA;544_545delAA;564_1746del
21 human 113251 LARP4 La ribonucleoprotein 4 XM_011537843.3 31.8% 31% 1_234del;781_782delAA;801_1770del
22 human 113251 LARP4 La ribonucleoprotein 4 NM_001352315.2 28.8% 28% 1_207del;754_755delAA;774_1956del
23 human 113251 LARP4 La ribonucleoprotein 4 NM_001170808.1 28.7% 28% 1_210del;757_758delAA;777_1959del
24 human 113251 LARP4 La ribonucleoprotein 4 NM_199190.3 28.7% 28% 1_210del;757_758delAA;777_1959del
25 human 113251 LARP4 La ribonucleoprotein 4 NM_001352309.2 28.7% 27.9% 547_548delAA;567_1962del
26 human 113251 LARP4 La ribonucleoprotein 4 NM_001352310.2 28.7% 27.9% 547_548delAA;567_1962del
27 human 113251 LARP4 La ribonucleoprotein 4 NM_001352311.2 28.7% 27.9% 547_548delAA;567_1962del
28 human 113251 LARP4 La ribonucleoprotein 4 NM_001352312.2 28.7% 27.9% 547_548delAA;567_1962del
29 human 113251 LARP4 La ribonucleoprotein 4 NM_001352313.2 28.7% 27.9% 547_548delAA;567_1962del
30 human 113251 LARP4 La ribonucleoprotein 4 NM_001352314.1 28.7% 27.9% 547_548delAA;567_1962del
31 human 113251 LARP4 La ribonucleoprotein 4 XM_011537838.3 28.7% 27.9% 547_548delAA;567_1962del
32 human 113251 LARP4 La ribonucleoprotein 4 XM_017018751.2 28.7% 27.9% 547_548delAA;567_1962del
33 human 113251 LARP4 La ribonucleoprotein 4 XM_017018753.2 28.7% 27.9% 547_548delAA;567_1962del
34 human 113251 LARP4 La ribonucleoprotein 4 XM_017018754.2 28.7% 27.9% 547_548delAA;567_1962del
35 human 113251 LARP4 La ribonucleoprotein 4 NM_001352308.2 28.5% 27.7% 1_228del;775_776delAA;795_1977del
36 human 113251 LARP4 La ribonucleoprotein 4 XM_011537835.3 28.4% 27.6% 1_234del;781_782delAA;801_1983del
37 human 113251 LARP4 La ribonucleoprotein 4 XM_011537836.3 28.4% 27.6% 1_234del;781_782delAA;801_1983del
38 human 113251 LARP4 La ribonucleoprotein 4 NM_001352307.2 26.1% 25.7% (many diffs)
39 human 113251 LARP4 La ribonucleoprotein 4 NM_199188.3 26% 25.3% 1_207del;754_755delAA;774_2169del
40 human 113251 LARP4 La ribonucleoprotein 4 NM_052879.5 25.9% 25.2% 1_210del;757_758delAA;777_2172del
41 human 113251 LARP4 La ribonucleoprotein 4 NM_001352306.2 25.8% 25.4% (many diffs)
42 human 113251 LARP4 La ribonucleoprotein 4 NM_001352305.2 25.7% 25.1% 1_225del;772_773delAA;792_2187del
43 human 113251 LARP4 La ribonucleoprotein 4 NM_001330415.2 25.7% 25% 1_228del;775_776delAA;795_2190del
44 human 113251 LARP4 La ribonucleoprotein 4 XM_011537829.3 25.6% 25% 1_234del;781_782delAA;801_2196del
45 mouse 207214 Larp4 La ribonucleoprotein domain... NM_001284521.1 25.7% 25.6% (many diffs)
46 mouse 207214 Larp4 La ribonucleoprotein domain... XM_006520675.1 25.7% 25.6% (many diffs)
47 mouse 207214 Larp4 La ribonucleoprotein domain... XM_017316524.1 25.7% 25.6% (many diffs)
48 mouse 207214 Larp4 La ribonucleoprotein domain... NM_001284522.1 23.6% 23.5% (many diffs)
49 mouse 207214 Larp4 La ribonucleoprotein domain... NM_001080948.2 23.6% 23.5% (many diffs)
50 mouse 207214 Larp4 La ribonucleoprotein domain... NM_001024526.2 23.5% 23.5% (many diffs)
51 mouse 207214 Larp4 La ribonucleoprotein domain... NM_001284523.1 23.5% 23.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
630
ORF length:
564
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTA TTCTTCATCT TGTGAAACCA CAAGAAATAC TACAGGCATT GAAGAATCAA
121CTGATGGGAT GATTTTAGGA CCAGAAGATC TGAGTTACCA AATATATGAT GTTTCCGGAG
181AAAGCAATTC AGCAGTTTCT ACAGAAGACC TAAAAGAATG TCTGAAGAAA CAATTAGAAT
241TCTGTTTTTC ACGAGAAAAT TTGTCAAAGG ATCTTTACTT GATATCTCAA ATGGATAGTG
301ATCAGTTCAT CCCAATTTGG ACAGTTGCCA ACATGGAAGA AATAAAAAAG TTGACTACAG
361ACCCTGATCT AATTCTTGAA GTGTTAAGAT CTTCTCCCAT GGTACAAGTT GATGAGAAGG
421GTGAGAAAGT GAGACCAAGT CATAAGCGTT GTATTGTAAT TCTTAGAGAG ATTCCTGAAA
481CAACACCAAT AGAGGAAGTG AAAGGTTTGT TCAAAAGTGA AAACTGCCCC AAAGTGATAA
541GCTGTGAGTT TGCACACAAT AGCAACTGGT ATATCACTTT CCAGTCAGAC ACAGATGCAC
601AACAGGCTTT TATACTTAAG AGAAGAAGTT ACCCAACTTT CTTGTACAAA GTtggcatta
661taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)

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