Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13040
- Subject:
- NM_001164493.1
- Aligned Length:
- 2625
- Identities:
- 1385
- Gaps:
- 1116
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTCCAGGCACCACAGCCGCTTCGAAAGAGATTACCGCATAGGCTGGGACCGCCGTGAGTGGAGCGTCAATGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GACCCACGGGGCCACCAGCGTCTGCAGCGTCACCTCCGGTGCTGGTGGCAGCACAGCCAGCAGTCTCAGCGCAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GACCGGGCCTCCTACCACTGCCTGTGGTACCCTCCCGGCTGCCCACACCCGCCACGGCTCCTGCTCCCTGCACG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACCGGCAGCAGTGAAGCTATCACCAGTCTTGTGGTCAGCTCGGCCTCCGCAGCCACCACCAAGGCTCCCGGCAT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTCCAAAGCTGACAATCAGTCTCAAGGACTCACGACCAGCATCCGATGGGGGCAGACGCCTGTCAATCAGTCCA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CGCCCTGGGACACTGATGAGCCGCCCTCCAAACAGATGAGGGAGAGCGACAATCCAGGCACAGGGCCATGGGTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACCACGGTGGCCGCTGGAAACCAGCCTTCCCTGATCACACACTCCTATGGAGTGACCCAGCCTCCCACCTTCAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCCTGCTGTGAACGTCCAGGCCCCCGTCATCGGGGTGACTCCCTCACTGCCTCCCCATGTGGGACCCCAGCTCC 592
Query 1 -----ATGCCAGGCCACTACTCGCTCCCTCAGCCGCCCTCTCAGCCACTGAGCAGCGTGGTGGTCAACATGCCT 69
||.||||||||||||||.|||||.|||||||||||.||.||.||||||||.||||||||.|||||||||
Sbjct 593 CGCTGATACCAGGCCACTACTCACTCCCACAGCCGCCCTCCCAACCGCTGAGCAGTGTGGTGGTGAACATGCCT 666
Query 70 GCCCAGGCCCTGTATGCCAGCCCTCAGCCCCTGGCCGTGTCCACACTGCCCGGTGTGGGGCAGGTGGCCCGCCC 143
||.||||||||||||||||||||||||||||||||.||.|||||..||||.||.||.||||||||..|||||||
Sbjct 667 GCTCAGGCCCTGTATGCCAGCCCTCAGCCCCTGGCAGTATCCACTTTGCCTGGAGTAGGGCAGGTATCCCGCCC 740
Query 144 AGGACCCACCGCTGTGGGCAACGGCCACATGGCAGGGCCCCTGCTGCCTCCACCGCCGCCAGCCCAGCCGTCCG 217
.|||||||||.|||||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||||
Sbjct 741 GGGACCCACCCCTGTGGGCAACGGCCACATGGCAGGGCCCCTGCTGCCTCCACCTCCACCAGCCCAGCCGTCCG 814
Query 218 CCACTCTCCCCAGTGGTGCCCCTGCCACCAATGGGCCCCCCACAACCGACTCGGCCCACGGGCTGCAGATGCTG 291
|..|||||||||||.|||..|||||||||||||||||.||||||||.|||||||||||.||||||||.|||||.
Sbjct 815 CAGCTCTCCCCAGTAGTGTTCCTGCCACCAATGGGCCGCCCACAACAGACTCGGCCCATGGGCTGCAAATGCTT 888
Query 292 CGGACCATTGGCGTGGGGAAGTATGAGTTCACCGACCCGGGGCACCCCAGAGAAATGTTGAAGGAATTGAACCA 365
|||||||||||.||||||||||||||||||||||||||.||||||||.|.||||||||||||||||||||||||
Sbjct 889 CGGACCATTGGAGTGGGGAAGTATGAGTTCACCGACCCAGGGCACCCTAAAGAAATGTTGAAGGAATTGAACCA 962
Query 366 GCAACGCAGAGCGAAAGCGTTTACAGACCTGAAAATTGTTGTTGAAGGCAGAGAGTTTGAAGTCCACCAAAATG 439
||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GCAACGCAGAGCGAAAGCATTTACAGACCTGAAAATTGTTGTTGAAGGCAGAGAGTTTGAAGTCCACCAAAATG 1036
Query 440 TTCTAGCTTCCTGCAGCTTGTATTTCAAGGACCTGATTCAAAGGTCCGTGCAAGACAGCGGCCAGGGCGGCCGG 513
||||||||||||||||||||||||||||||||||||||||||||||.|||||.||||||.|||||.||.|||||
Sbjct 1037 TTCTAGCTTCCTGCAGCTTGTATTTCAAGGACCTGATTCAAAGGTCGGTGCAGGACAGCAGCCAGAGCAGCCGG 1110
Query 514 GAGAAGCTGGAGCTCGTCCTGTCGAACCTGCAGGCAGACGTCCTGGAGTTGCTGCTGGAGTTTGTCTACACGGG 587
||||||.|||||||.||.||.||.|||||||||||.||.|||||||||.|.|||||.|||||||||||||||||
Sbjct 1111 GAGAAGTTGGAGCTGGTGCTCTCCAACCTGCAGGCTGATGTCCTGGAGCTACTGCTAGAGTTTGTCTACACGGG 1184
Query 588 CTCCCTGGTCATCGACTCGGCCAACGCCAAGACACTGCTGGAGGCGGCCAGCAAGTTCCAGTTCCACACCTTCT 661
.||.||||||||||||||.|||||.||||||||.||.||.|||||||||||||||||||||||.||||||||||
Sbjct 1185 GTCGCTGGTCATCGACTCAGCCAATGCCAAGACTCTACTCGAGGCGGCCAGCAAGTTCCAGTTTCACACCTTCT 1258
Query 662 GCAAAGTCTGCGTGTCCTTTCTCGAGAAGCAGCTGACGGCCAGCAACTGCCTGGGCGTGCTGGCCATGGCCGAG 735
||||||||||.|||||||||||.||||||||||||||.|||||||||||.|||||.||||||||||||||.|||
Sbjct 1259 GCAAAGTCTGTGTGTCCTTTCTAGAGAAGCAGCTGACTGCCAGCAACTGTCTGGGAGTGCTGGCCATGGCTGAG 1332
Query 736 GCCATGCAGTGCAGCGAGCTCTACCACATGGCCAAGGCCTTCGCGCTGCAGATCTTCCCCGAGGTGGCCGCCCA 809
||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GCCATGCAGTGCAGTGAGCTCTACCACATGGCCAAGGCCTTCGCGCTGCAGATCTTCCCCGAGGTGGCCGCCCA 1406
Query 810 GGAGGAGATCCTCAGCATCTCCAAGGACGACTTCATCGCCTACGTCTCCAACGACAGCCTCAACACCAAGGCTG 883
|||||||||||||||||||||.||.||.||||||||.||||||||||||||.|||||||||||.||||||||.|
Sbjct 1407 GGAGGAGATCCTCAGCATCTCTAAAGATGACTTCATTGCCTACGTCTCCAATGACAGCCTCAATACCAAGGCCG 1480
Query 884 AGGAGCTGGTGTACGAGACAGTCATCAAGTGGATCAAGAAGGACCCCGCGACACGCACACAGTACGCGGCTGAG 957
||||||||||.||||||||.||||||||||||||||||||||||||.||.|||||..|||||||.||.||.|||
Sbjct 1481 AGGAGCTGGTCTACGAGACTGTCATCAAGTGGATCAAGAAGGACCCAGCAACACGTGCACAGTATGCAGCAGAG 1554
Query 958 CTCCTGGCCGTGGTCCGCCTCCCCTTCATCCACCCCAGCTACCTGCTCAATGTGGTTGACAATGAAGAGCTGAT 1031
||||||||.|..|||||||||||.||||||||.||||||||.||||||||||||||.|||||.|||||||||||
Sbjct 1555 CTCCTGGCTGCCGTCCGCCTCCCGTTCATCCATCCCAGCTATCTGCTCAATGTGGTGGACAACGAAGAGCTGAT 1628
Query 1032 CAAGTCATCAGAAGCCTGCCGGGACCTGGTGAACGAGGCCAAACGCTACCATATGCTGCCCCACGCCCGCCAGG 1105
|||||||||||||||.||.|||||||||||.||.|||||.|||||||||||.|||||.|||||||||||.||||
Sbjct 1629 CAAGTCATCAGAAGCATGTCGGGACCTGGTCAATGAGGCTAAACGCTACCACATGCTACCCCACGCCCGGCAGG 1702
Query 1106 AGATGCAGACGCCCCGAACCCGGCCGCGCCTCTCTGCAGGTGTGGCTGAGGTCATCGTCTTGGTTGGGGGCCGT 1179
||||||||||.||||||||||||||.||||||||||||||||||||.|||||||||||.|||||||||||||||
Sbjct 1703 AGATGCAGACACCCCGAACCCGGCCCCGCCTCTCTGCAGGTGTGGCCGAGGTCATCGTTTTGGTTGGGGGCCGT 1776
Query 1180 CAGATGGTGGGGATGACCCAGCGCTCGCTGGTGGCCGTCACCTGCTGGAACCCGCAGAACAACAAGTGGTACCC 1253
||||||||.|||||||||||||||||.||||||||.|||||||||||||||||.||||||||||||||||||||
Sbjct 1777 CAGATGGTTGGGATGACCCAGCGCTCACTGGTGGCTGTCACCTGCTGGAACCCACAGAACAACAAGTGGTACCC 1850
Query 1254 CTTGGCCTCGCTGCCCTTCTATGACCGCGAGTTCTTCAGTGTAGTGAGTGCAGGGGACAACATCTACCTCTCAG 1327
|||||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 1851 CTTGGCCTCGCTGCCTTTCTATGACCGCGAGTTCTTCAGTGTAGTGAGTGCTGGGGACAACATCTACCTCTCAG 1924
Query 1328 GTGGGATGGAATCAGGGGTGACGCTGGCTGATGTCTGGTGCTACATGTCCCTGCTTGATAACTGGAACCTCGTC 1401
||||.||||||||||||||||||||||||||||||||||||||||||||||||.|.||||||||||||||.|||
Sbjct 1925 GTGGTATGGAATCAGGGGTGACGCTGGCTGATGTCTGGTGCTACATGTCCCTGTTGGATAACTGGAACCTGGTC 1998
Query 1402 TCCAGAATGACAGTCCCCCGCTGTCGGCACAATAGCCTCGTCTACGATGGGAAGATTTACACCCTCGGGGGACT 1475
|||||||||||.|||||.||.|||||.||||||||.||||||||.|||||||||||.|||||.||.||||||||
Sbjct 1999 TCCAGAATGACTGTCCCTCGTTGTCGCCACAATAGTCTCGTCTATGATGGGAAGATCTACACTCTTGGGGGACT 2072
Query 1476 TGGCGTGGCAGGCAACGTGGACCATGTGGAGAGG---------------------------------------- 1509
|||.|||||.||||||||||||||||||||||||
Sbjct 2073 TGGAGTGGCCGGCAACGTGGACCATGTGGAGAGGTACGACACTATCACTAACCAATGGGAGGCAGTAGCCCCTC 2146
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2147 TGCCCAAGGCGGTACATTCGGCAGCGGCCACTGTGTGTGGTGGCAAAATCTACGTGTTTGGTGGCGTGAATGAG 2220
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2221 GCAGGCCGAGCGGCAGGTGTCCTCCAGTCCTATGTGCCACAGACCAACACGTGGAGCTTCATTGAGTCCCCAAT 2294
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2295 GATAGACAACAAATATGCACCTGCTGTCACCCTCAATGGCTTTGTGTTCATCCTGGGAGGAGCTTATGCCAGAG 2368
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2369 CCACCACCATCTACGACCCAGAAAAAGGCAACATCAAGGCGGGGCCAAACATGAATCACTCTCGGCAGTTCTGC 2442
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2443 AGTGCCGTGGTGCTCGATGGTAAAATTTATGCTACTGGAGGCATCGTGAGCAGTGAGGGACCAGCCCTGGGCAA 2516
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2517 CATGGAAGCCTACGAGCCCACAACCAACACATGGACCCTCTTACCCCACATGCCCTGTCCTGTGTTCAGACACG 2590
Query 1510 ----------------------------------- 1509
Sbjct 2591 GCTGTGTTGTGATAAAAAAGTATATTCAAAGCGGC 2625
