Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13098
Subject:
NR_135757.2
Aligned Length:
5840
Identities:
255
Gaps:
5575

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTCCCCCGCTTGGCTTCCAGCGCCGCTTGCGCTCCGGAGCGCTGGCTCTGCTGGCGCTGAGAAATGGACCAATT  74

Query    1  -----------------------------------------------ATGGCGTCCGAACTTTGTAAGACGATC  27
                                                           |||||||||||||||||||||||||||
Sbjct   75  TTGACAAGATATAGTGCTGCAGCGTGCCTGATGGGATATATTCAGTCATGGCGTCCGAACTTTGTAAGACGATC  148

Query   28  TCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCATTGGAGTT  101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTATAGGAATCTGCACCATTTTCCATTGGAGTT  222

Query  102  ACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTGCCAGAAA  175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGAAAAGGAACTCCCTGACATCCTTGCCAGAAA  296

Query  176  ACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTGAAGACAACTG------------TTAGTTTTG--------  229
            ||||||||||||||||||||||||||||||||||    |.|.|||            .|||||.||        
Sbjct  297  ACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACT----ATACCTGCACTCAAATAACATAGTTGTGGTTCCGGA  366

Query  230  ------TGG----CTT-----ACTGCTGCTCCACCCAGTGTCTGCA-------GAC---------------TTT  266
                  |||    |||     |||          |||.||||||.|       |||               .||
Sbjct  367  AGCCATTGGGTCTCTTGTAAAACT----------CCAATGTCTGGATCTTAGTGACAATGCCTTAGAAATTGTT  430

Query  267  TGACCTG-----------CTGAGT--------------------------------------------------  279
            ||.||.|           |||||.                                                  
Sbjct  431  TGCCCAGAAATTGGTCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAACTGCAATTCCTACCTCC  504

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct  505  AGTACCTCACTGTGGACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCTCAATGAG  578

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct  579  CTCTCCATGGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAACTACAGTATGTATA  652

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct  653  CGTGGATAACAACATTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGTGGGCTTC  726

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct  727  TGTACTGCTGCACATGCTGTTCCCTCTGCTTGGAATGCTCATAACACATTTCCATTTATTCCAGCTGTGGTGCT  800

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct  801  CCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTTTCCTCCCAGCTGAGGT  874

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct  875  GAAGGCCATAGGGACGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATGAGAGGGCTGTATCATACCT  948

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct  949  ACCACAGCTTGCTGAAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAGAAGTCTCCTAGAGCTGCTGCAC  1022

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1023  TGCCCTCTGGGGCACTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCTACCCCAAGCTCTTTCCCTTGAG  1096

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1097  AGAGACGCCAATGGCAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTTGTGGCTTACTGCTGCTCCACCCAGT  1170

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1171  GTCTGCAGACTTTTGACCTGCTGAGTTGATAAACACTCAAGAACCTCAGGAGCGCTGCCAGCTTGACACTGGGG  1244

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1245  AATCCAGCCAGTCCAGCACACTCTTCCATCCTGTCCTGTCCAATGCGGGGGCACTGCAGAACTCTCTAGAAATG  1318

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1319  TCATGATTGAGCTTCAGAGCTAAAATGCCTTCACCCTTCCCCCAAGTTGGAATATATCCTCCCCCAAATTAAGG  1392

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1393  ACCCATTTGTCTTCTGTGTTTTTCCTTTTTATGTGAGTGTGTCTTTTACAGAAACCATTTAGATTGATGGGCCT  1466

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1467  CCCCAAATCTAATTTAAAGCAAGTTTCCGGTCCTTGGAGAACAGTGACTTGATCATCTAGCCAGATTCCCTTTT  1540

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1541  GAACACACATACCTTCAGTGATGCTTCCTCTCCTCTCCCCTCCCTTGCTTTCCCCAGAGAGTTATTTCCCTGAG  1614

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1615  ACCATGTTCTCCACAGTGTCTCCAGTGGAAACTTGTCAGTTTTTGAGGAGTTTCAGCAAACCCCGTGGCCTCAA  1688

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1689  TGGTCTTGAGTAGCAGGGTGGGGCGCCTGAGTTGGCAGCAAAGTGAGGCTCCCATGGAGGCTCAGTGAGGGTCC  1762

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1763  CAGAGCACACACCCTCTGGAAAGTTCCAGCCTTGTTTATACGTTCTACAGTGTAGCAACAGACTTTTGTGAGGG  1836

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1837  ATTTTAAAAACAAAAATGTAGATTGTAATGAAATACACTTCCTGTTTTTTAAAAGTGTTTGCAGAAAAATGATT  1910

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1911  TTTGAAGTTTTTAAATTTCCTGATAAGATTTTTTTTATATGAGAAGAATTTGAGGAATATTTGAAGCTTTACAA  1984

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 1985  GATCTGATTTTTTTCTTTCTCAATATAAAGTTTCCATACAATGAGAAAGGGGGAGAAAACACACATTGAAATAA  2058

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2059  GACCTCCGTGTTCTTTTTTGATGGGTTTATGATTCAGTTTATACTGACTTTGAAATATTTTTGTCACATGTGAA  2132

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2133  AGGCTTCAGCTACTTCCACTACTGGTTTTTTTTTGTTGTTGTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTG  2206

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2207  GAGTGCAGTGGCGGGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTC  2280

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2281  CCAAGTAGCTGGGACCACAGGCGCCCGCCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTT  2354

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2355  CACCGTGTTAGCCGGGATGGTCTCGATCTCCTGACCTCGTGATCCGCACGCCTCGGCCTCCCAAAGTGCTGGGA  2428

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2429  TTACAGGCGTGAGCCACCGCGCCCGGCCCACTACTGGTTTTTAACAGGATGATTCAAAGTACAGCCCGTGCACA  2502

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2503  TTTACTTCGTCACCTGGTGCACCACACTGTCTTCATGTTGGCCCTCGTTTCTTGTATACTTAGCTTACTGCCCA  2576

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2577  GATGCAACTGAGAAAATACAGGAAAAGCAGGTCCAAATTCAGCCTTCGACTTCTGCAAAAGTCCATAAACAGAA  2650

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2651  AGTCTGTGAGCCTCCACCCTGCCAGAAAGAACTCTTCATGAAGAAGTCACGTATTTGCTCTTCCTTTCAAAGGA  2724

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2725  TGGCATTTTAATGTTGCTTTGCTGCCAGATGTTCATCTGCTTGCTGTGAAGTGATTCTTTTTTTAAAATGTTTT  2798

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2799  TTAATGATGTAAGTTTTCTAAAAGGCAGGGCTGAATGGAGAACCAAGAATTTGCTTGGTAGAAAAATTATTTTT  2872

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2873  TTTTAATTTCAGACTTATCAAAAATTTGGTTGAGGGAATTTTTATTAGCTGCCCTGACTTTATAATGCTACGCT  2946

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 2947  CTTAACAGTGCCAAAAATCCTACATAGTTACTGACAAATGTGTGATCTTTTTACAGTCACAACACCTGCTGCCC  3020

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3021  GGAAAGCACACCGTCCACGTAGAATGGAGAAGGCAGAAAGTTACCGTGTGTTCCCACTGTATCTGCACTGTTCT  3094

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3095  TACTTCCTCTTGTCCCTTTTCATATCTTGGTCTATTCAGCCTTAACATTTCAAAGGCTTATAGTAAAATAGGAA  3168

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3169  CTGAAGATCTGTATCAAAATGTAACACTTTCATCCTTTGGAATAATTGAAGTTTAACATAACCTCTACATGTAT  3242

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3243  ATAAGTTAGCTGGTGAAAATGTGGCATGAAACTTCACAATTGTGCTTCAGGCCTAAGTGACTGCTACCTATGAT  3316

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3317  TTAAGTGACAGTAAATGTCTTGCTACATTTTTCTATTTCATCCTCTACAATCATATGTCATGGAATGGAGCTAT  3390

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3391  GAAATGTGCTAACTTGGTATTCAGGATTCTCATTGTGATAAGGTGATACATTAGTTTTACCTTGTTTGAAATTT  3464

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3465  TACAAAAATGCTTACAATCCAGGCATTCTTTCTCTACCTATTATGAACTACGGTGTGTTAAACAACAGCAGTGG  3538

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3539  GCTGGGCAGACAACCTTTGGGCAGTCTCAACCTTAATCCTTGGGTACAGCACCTGAACTTAATTGATGAGAAGT  3612

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3613  GGAACTTAAGTGGTTTCCCTGGTGCTGTTCATTATGGAAATTTTATGCTGGATTTATCGATGTCATTCTTAATC  3686

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3687  TTTTGATACTATAAAGGAGTCTTACCAACTGGAGAAAATTTGCCTACATGCTATATATTTGAATTGTGTCCAAA  3760

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3761  GCTTTGCAGAAAAGCAAATCTGAAGTTATTATATATGTTGTTTTCTTGAGCAACAGTTACACTAGGTAGAAAAG  3834

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3835  TATTCACACAATAATAGTAATGCAAAAAAAGTGAGCTACTTGGAAAGTATCATCTCTGTTCAGGTAAGTTTACT  3908

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3909  TCAGTGAACTCTTGTGTGGTTAGCGATAAGTTTTAAAGTCCAGGATAGCCTCATGAGCATAGGCCTTCCTATGA  3982

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 3983  AGTAGTGCAAAGGGGGCCGATTTTAGTGGATTACCCTATCAGTGTTCTTCAGTATGTCCAATTGTTATCATACC  4056

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4057  AAAAACCTTAATTACATAACATTGTGTGGATGAAATGCTGCATCTTCAGTTAATACATGTTTTGAGCACATTCT  4130

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4131  TAAAATACATAATAATTAAATGATCCCTATTCAAAAGAACCCTGGCTTGGGTGGAGGATCCACTCTGGCTAACG  4204

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4205  GATAAGAGTGATGAACTTCTTTGTTACCTGACCCTTCTCTTCTGGAAAAGTGAGGTGTACATTAAACATCTTTT  4278

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4279  GGTCACCGTGCCTCACTAAGACCTTTCACATTCCAGCTTGTCCGACTAGTGTAATGTACCTCTCACTTCTGTTT  4352

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4353  TACGTTGAGCATTACGAATTAAAATCTTTACAGTCTAGGGGGAAAAAAAGGCTTCAATACCAGTTGGCTTATGA  4426

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4427  GGCTCTGCATATAATTTTCTCTAAAATATGTAACTATTTTGTAGTCTGTGGGGACTTTCAAAGCCAATTTTTAA  4500

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4501  AATTAGTAGTAGTAAAGGTTTTTCCCTTTCCTGAATGAAAAATCAGAAATTCTAATCTTTGCTATAAAGTACTT  4574

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4575  AAACACAATACATTGCCTCAGCATAAATAAAAACATTTTTATTAAGATGATTTATGAACATGGATTTCTAACTG  4648

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4649  GACCAACACTAATGTTGCAACCTGATAAAATTTGAGATGTAAATTCATTTCACAGACTCATAAACACACTCTCT  4722

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4723  TTAAGACTCTTCTTTAAATGGATCCTTACATTACCCTGCCTGTTTTATTATGCCTTCATTTTTGTGGTTTTCAT  4796

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4797  TCACTCCTGCTTGCTTCTATTGAGGTTCTCCTACATTTCCCAGAAACTCAGTGAATATCTTGCCTTTTCTTCAA  4870

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4871  ACAAAGGGGGTTTTTATAAAGTTTGTATTTTTGAAACTAGCTCTATGTCTATCTAAAAATCAAGTCTCGGCAGT  4944

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 4945  GGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCGAGGAGGGCAGATCATCTGAGGTCAGGAGTTTGAGACCA  5018

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5019  GCCTGGCCAGCATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGCGCACCTG  5092

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5093  CAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGCAGGAAGAGGTTGCATTGAGCTGAG  5166

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5167  ATCACGCCATTACACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAAAATCATTCAAGTTTCACTG  5240

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5241  TGCCTACAGTGAGGAGCTACCTCCTTGTGTCATCAGCTAATAGATCTGAAAGTGATGCCGGTGTCTCTAGGAAA  5314

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5315  GGAATTGATCATAGCCAAGTGACTGACATTCTCTCGGTCAGGAAAAGAGCTTGCTTCACAGCCTTTGAAGTATG  5388

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5389  ACTGTATGTGTGGTCCCCTTGTACTTTGGAGACAGAAGGTACTGGCAGCGAGTGTGGTGGATGGGCAGAAGGTG  5462

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5463  TAGCATTCGGAGATTATTTCTGTATGTAATTAAGAGACTTTCAAGGGTTAGCCAGACTTTTTTCCACTCAAGTG  5536

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5537  TGGATTATCTTTGCTACCTGTGTTAAAGAATATCAGGTTTTGTTTCTTATTGTGATTTTTGAGTCTAAATGATC  5610

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5611  CAAGATTTTTAAAATAGATACATAATGAAATCCAGGCCTCTGAAAAATTATGGCAACATTCATTTGGAGTGTGG  5684

Query  280  --------------------------------------------------------------------------  279
                                                                                      
Sbjct 5685  CTAAAAACTCATACTTTATCCAATTTGGTTGCCTCTCTCAGTTACTGCAGTTTATAGAATAATTGAGCTTGAAC  5758

Query  280  --------------------------------------------------------------------  279
                                                                                
Sbjct 5759  CATGTGAATGCTCAGAATGTCAATGGTGGAGTATTTATTCAAGAGAAATGGCTGAATCTCGATACGAA  5826

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