Construct: ORF ccsbBroadEn_13098
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011114.1_s300c1, BRDN0000389392
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC28 (123355)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 123355 | LRRC28 | leucine rich repeat contain... | XM_006720389.4 | 33.7% | 30% | (many diffs) |
| 2 | human | 123355 | LRRC28 | leucine rich repeat contain... | XM_017021914.1 | 33.7% | 30% | (many diffs) |
| 3 | human | 123355 | LRRC28 | leucine rich repeat contain... | XM_011521221.3 | 30.2% | 26.8% | (many diffs) |
| 4 | human | 123355 | LRRC28 | leucine rich repeat contain... | NM_001321677.2 | 28% | 31.2% | (many diffs) |
| 5 | human | 123355 | LRRC28 | leucine rich repeat contain... | NM_001284400.3 | 26.8% | 23.8% | (many diffs) |
| 6 | human | 123355 | LRRC28 | leucine rich repeat contain... | XM_011521220.2 | 24.4% | 21.6% | (many diffs) |
| 7 | human | 123355 | LRRC28 | leucine rich repeat contain... | NM_001321676.2 | 23.1% | 20.4% | (many diffs) |
| 8 | human | 123355 | LRRC28 | leucine rich repeat contain... | NM_001321675.2 | 22.8% | 20.2% | (many diffs) |
| 9 | human | 123355 | LRRC28 | leucine rich repeat contain... | NM_144598.5 | 22.8% | 20.2% | (many diffs) |
| 10 | human | 123355 | LRRC28 | leucine rich repeat contain... | XM_011521218.2 | 22.8% | 20.2% | (many diffs) |
| 11 | human | 123355 | LRRC28 | leucine rich repeat contain... | XR_001751086.2 | 16.6% | (many diffs) | |
| 12 | human | 123355 | LRRC28 | leucine rich repeat contain... | NR_135759.2 | 4.5% | (many diffs) | |
| 13 | human | 123355 | LRRC28 | leucine rich repeat contain... | NR_135753.2 | 4.4% | (many diffs) | |
| 14 | human | 123355 | LRRC28 | leucine rich repeat contain... | NR_135757.2 | 4.3% | (many diffs) | |
| 15 | human | 123355 | LRRC28 | leucine rich repeat contain... | NR_135756.2 | 4.3% | (many diffs) | |
| 16 | human | 123355 | LRRC28 | leucine rich repeat contain... | NR_135758.2 | 4.2% | (many diffs) | |
| 17 | human | 123355 | LRRC28 | leucine rich repeat contain... | NR_135755.2 | 4% | (many diffs) | |
| 18 | mouse | 67867 | Lrrc28 | leucine rich repeat contain... | NM_027413.1 | 52.7% | 45.8% | (many diffs) |
| 19 | mouse | 67867 | Lrrc28 | leucine rich repeat contain... | XM_006541130.3 | 27.4% | 23.9% | (many diffs) |
| 20 | mouse | 67867 | Lrrc28 | leucine rich repeat contain... | NM_175124.5 | 22.3% | 19.4% | (many diffs) |
| 21 | mouse | 67867 | Lrrc28 | leucine rich repeat contain... | XR_391360.3 | 8.6% | (many diffs) | |
| 22 | mouse | 67867 | Lrrc28 | leucine rich repeat contain... | NR_028143.1 | 8.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 345
- ORF length:
- 279
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GTCCGAACTT TGTAAGACGA TCTCTGTGGC AAGGCTAGAA AAGCACAAGA 121 ATTTGTTCTT AAATTATAGG AATCTGCACC ATTTTCCATT GGAGTTACTG AAAGATGAGG 181 GACTGCAGTA CTTGGAGAGA CTCTATATGA AAAGGAACTC CCTGACATCC TTGCCAGAAA 241 ACCTTGCTCA GAAGCTTCCA AACCTTGTGG AACTGAAGAC AACTGTTAGT TTTGTGGCTT 301 ACTGCTGCTC CACCCAGTGT CTGCAGACTT TTGACCTGCT GAGTTGCCCA ACTTTCTTGT 361 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c