Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13107
- Subject:
- XR_388550.2
- Aligned Length:
- 6630
- Identities:
- 408
- Gaps:
- 6192
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGCTCTCGCCGCTGGCCCGGCTCGGCGCTCGCGGAGCTTCGCAGCCGCCGGGCGGGGGGAGGAGGCGGGGGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAGGGACGGAGATCTGGGGCTCGGAGCCGGCCGCCGCTGCGCTCCGCTTCGCTGTGGGGCTCGGTGTGTCGGGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTGGGGGGGCGGGGGGGCTCCGCTATGGAGGCAAATGGGAGCCCAGGCACCTCGGGCAGCGCCAACGACTCCCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCACGACCCCGGTAAAATGTTTATCGGTGGACTGAGCTGGCAGACCTCACCAGATAGCCTTAGAGACTATTTTA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCAAATTTGGAGAAATTAGAGAATGTATGGTCATGAGAGATCCCACAACGAAACGCTCCAGAGGCTTCGGTTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTCACCTTCGCAGACCCAGCAAGTGTAGATAAAGTATTAGGTCAGCCCCACCATGAGTTAGATTCCAAGACGAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGACCCAAAAGTTGCATTTCCTCGTCGAGCGCAACCTAAGAGTCAAGAGCAGGGAGGCTCCTGGAAACGCACAT 518
Query 1 --------------------------------------ATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGG 36
|||||||||||||||||||||||.||.|||||.||.
Sbjct 519 GGACCACGGTCCAAGCTCGGGCTGCCTCAGGTGACCAGATGGTCACAAGAACAAAGAAAATCTTCGTAGGAGGA 592
Query 37 TTATCTGCGAACACAGTAGTGGAAGATGTAAAGCAATATTTCGAGCAGTTTGGCAAGGTGGAAGATGCAATGCT 110
||.|||||.||||||||||||||||||||||||||.|||||||||||||||||||||||.||.|||||.|||||
Sbjct 593 TTGTCTGCAAACACAGTAGTGGAAGATGTAAAGCAGTATTTCGAGCAGTTTGGCAAGGTAGAGGATGCGATGCT 666
Query 111 GATGTTTGATAAAACTACCAACAGGCACAGAGGGTTTGGCTTTGTCACTTTTGAGAATGAAGATGTTGTGGAGA 184
||||||.||.|||||.||||||||||||||||||||||||||||||||.||||||||||||||.||||||||||
Sbjct 667 GATGTTCGACAAAACCACCAACAGGCACAGAGGGTTTGGCTTTGTCACCTTTGAGAATGAAGACGTTGTGGAGA 740
Query 185 AAGTCTGTGAGATTCATTTCCATGAAATCAATAATAAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTC 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAGTCTGTGAGATTCATTTCCATGAAATCAATAATAAAATGGTAGAATGTAAGAAAGCTCAGCCGAAAGAAGTC 814
Query 259 ATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGACTGCCTTACACCATGGACGCGTTCATGCTTGGCATGGG 332
|||||||||||||||||||||||||||||||||||.|||||.|||||||||||.||||||||||||||||||||
Sbjct 815 ATGTTCCCACCTGGGACAAGAGGCCGGGCCCGGGGGCTGCCATACACCATGGATGCGTTCATGCTTGGCATGGG 888
Query 333 GATGCTGGGATATCCCAACTTCGTGGCGACCTATGGCCGTGGCTACCCCGGATTTGCTCCAAGCTATGGCTATC 406
|||||||||.||.||||||||.|||||.|||||||||.|.||||||||||||||||||||.|||||||||||.|
Sbjct 889 GATGCTGGGCTACCCCAACTTTGTGGCAACCTATGGCAGAGGCTACCCCGGATTTGCTCCTAGCTATGGCTACC 962
Query 407 AGTTCCCAG-ACTATTTGCCGGTTTCACAAGACATAATTTTTAT-CAAC------------------------- 453
||||||||| .||||| || ||| ||||..|| |||.
Sbjct 963 AGTTCCCAGCCCTATT----------AC----CAT-ATTTAAATGCAAGCTTCCCGGCGGCAGCTTATGGACCA 1021
Query 454 -------------------------------------------------------------------------- 453
Sbjct 1022 GTGGCAGCGGCAGCTGTGGCAGCGGCTCGAGGATCAGGACCTGCACACGTCCTCTCAGACACTCTTCTGAGCAC 1095
Query 454 -------------------------------------------------------------------------- 453
Sbjct 1096 GCTCAGCAGGAAGGCTCCAACCCGGCGCGGCCCGGAGGCTTCCCGGGGGCCAACAGCCCAGGACCTGTCGCCGA 1169
Query 454 -------------------------------------------------------------------------- 453
Sbjct 1170 TCTCTACGGCCCTGCCAGCCAGGACTCCGGAGTGGGGAATTACATAAGCGCGGCCAGCCCACAGCCGGGCTCCG 1243
Query 454 -------------------------------------------------------------------------- 453
Sbjct 1244 GCTTCGGCCACGGCATAGCTGGACCTTTGATTGCAACGGCCTTTACAAATGGATACCACTGAGCAGGCGCTTCC 1317
Query 454 -------------------------------------------------------------------------- 453
Sbjct 1318 ATTGCCGTCTCACTATGAGAGCATACCTGGATGTCCAGGCAAGACTGGGCGAAGTTTCTGAGTGGCCCTTTGTT 1391
Query 454 -------------------------------------------------------------------------- 453
Sbjct 1392 TAGGTGACGTCCTCAGACCTGGACCCCCACCAGCCTCACTCCTCATCCCAACCAGAGGTGGCACACTTGGATTG 1465
Query 454 -------------------------------------------------------------------------- 453
Sbjct 1466 AGGGTTGACACATCTCATCTCACCCATCGGCTACCTGCTGTAATATAAGACAACAGCTTTTAAACGTGTATATA 1539
Query 454 -------------------------------------------------------------------------- 453
Sbjct 1540 ATCCATGATTTTGGTTTGGTTCTGTTTGTTTTCCTTGGTGGTCCCCCTCTCCCTCTTCCCTTCTCCTTTTAAAT 1613
Query 454 -------------------------------------------------------------------------- 453
Sbjct 1614 CTCCCTCAATCACATTTGGTAGTGATTTTTGACTTAGTCTGGTAGTCACCCAGCTTAATATCTAGTTAAAGCTA 1687
Query 454 -------------------------------------------------------------------------- 453
Sbjct 1688 ACCATAGTATACTTGTTATATATTAAGGAGTTTTTTTTCTTTTTTTTTGTTTTCTTTTTTCCTTTAAAGAGAAT 1761
Query 454 -------------------------------------------------------------------------- 453
Sbjct 1762 TTTTGTTTTGTTTTGATTCTGTTCTCGCTTTTAAAGGATGCTGAGATGGTGATGTTACTCTCCATTTTTGGTAC 1835
Query 454 -------------------------------------------------------------------------- 453
Sbjct 1836 CAGTTCTGAGACTGTAAGACTTTTCATCTGGGACTTTAGCACACACTGAATCGAAGTTGTGATACGCGGAGCGG 1909
Query 454 -------------------------------------------------------------------------- 453
Sbjct 1910 GAGGTGGGCATAGACTCTATTTTGTGTTGTAGAAGTGACATACAGTTGGCTGCTTAACAGACTCTCTAGCCGTT 1983
Query 454 -------------------------------------------------------------------------- 453
Sbjct 1984 CATTTTTGTGACGTCTCTTTGTTAACCTAAGTATATCTATTTTCGGCAATAAGGTAAGGACGGCCGTGTTTTGA 2057
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2058 GGGTCTTCCTTTCCTATGAGTGCTTTTTCTTTTCTTCTGTTCAAAGAGGTCATATTACAAGGTTTTTTGAAATT 2131
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2132 GTGAATTCTAAAAAACAAAAAACAAACAAAAAAATGTTGTAAATATAATTCCATTAACTACATAGAAACTATTA 2205
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2206 AGGAAGAGAGAATCAAAAAATATTTTTGTGAGGGAGTTGATCCTGGGCAGTTAGGTACCCTGGAAGGAGGGGAG 2279
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2280 GGAACCTCGATGAAGCCAGTACAACAACAGAAGAGCCCCCCCAGCTGCCAGGGCACCCCAGACCCCCACTCTTC 2353
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2354 ACTGTTGGTGTGATAGACCTAAGAACCACATTAGCACCCTGCCAGCCTACCAGCCTCTCTGTGCACAGCTTCTA 2427
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2428 ATGTTATGATCTAGCTAGATTTTTATTTAAAATATGAAAAACTGCTTTTCCCAAGACGTTTTTTAAAAGGAAAA 2501
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2502 AAAGCTACAATTTTAATATTTGACATATTTAAAGTTTCAAAGCACACTTGTTTTGGCTTAGGGGAGGGGCAGGG 2575
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2576 TGGGGTCATTCTTTTTCAGTCTTAATTTTTAAATATCTGATCATTTTATATTGTCCGATCATTTCAGCACCTCC 2649
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2650 AAAGGGTCCTAGGATATTCTGCCTCTCTCTTCACCCTGTCCCCAGACGGGGGAACCCGTGGGTCAGGCGTGGAT 2723
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2724 AAGCCTGCGAGAATACACCCTTTCTCCATTCACTTTCTATTTACAAATTAGGAAAGCAACCTTTCAGTTTATAT 2797
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2798 ATATATTTTTTTTCCTTTTTGATACCTCAGTGCTGCAAGTATCATCAGAGAGGCTATGGAAGAGTTTTGTGTTT 2871
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2872 TGTTTTTTGTTTTGTTTTTTTTTTTAATTTATTGTAGATGTAAACAGAATTTTAAAAATAAAATATAAACATCA 2945
Query 454 -------------------------------------------------------------------------- 453
Sbjct 2946 CTGCACTGTGACTGGTGGGGAAAACTGACAGCTTCCTGTTTGTACACATTTGACATTGGCTGTTATAATATATG 3019
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3020 GTCCTCAGTTGGGGAAGACACTTAGAATGAAGGATGTTTTTTAATTTAACTTTTTTTTTTTTTTAAAGAAAAAT 3093
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3094 ATCAGTAATAGGTCGGCAACAGCAGCCGTAGGAAGTACAACTTAGGGTAGCATTAAAGCATACTGTAGTGTGGA 3167
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3168 TATATTTTTTTTCTTTTTTAAAATGTGATATTGACATTTTATTAATATTTTTTAAATTGTTACGTTTATAAATT 3241
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3242 TGGTACTTAAGGCACAGCCAGTGTGAGGCACTGAACGCGACATTTATTACAATGAGCTGCTGCACTCCTACTTT 3315
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3316 TATAAATTTTACTAACAAGTAGACTAATGTAGACATTCACAGACGGGATAGCGCAGAAGCATCTTCACACGACA 3389
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3390 AGTCTCCAAAAAAAAAAAGCTAATTCAGAGAGGGCGGGAGGAAGCCTGTTCCCGTTCTAATTAAGTGCAACCTT 3463
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3464 GTTTTATCTTATTGTTTTATTTTTTAAGAAAGGAAATCATGTTCTTTTTTTATATCTCTATATATAAGATACAG 3537
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3538 AGTTGTTTGGTAAGGTTTGGGGTGTTTTTTGTTTTGTTTTGTTTTAAGTTTCCAAACAACCAAACTAAGAAAAA 3611
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3612 TGCTGGATGCTTTTAGAATACAAAACTTACTCAAGTCATAAAATAACAAAATAGAACTTTTACTTTAAGAAACA 3685
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3686 ACAACAAAGAGAGAGAGAGACTCGATTCCCAGCAAGTCAGTGTCTCACAAGGGCACTGGCTAATTACTCTTCTG 3759
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3760 TCCGCGTTGCTGATGTCCTGTCCCCAGCCCCTGTCCATCTCCCCCACACTCCCATCACCTCATAGAACGCTCTT 3833
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3834 TGTTGATCATTGTCTGTTAATAATGTATAAAATGGCTATCTTGTAAGTGTGCTGTCTTGGTACTAGTGTAGTGA 3907
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3908 CTTTTTTTCTCCTCTTCTAGTACATATTGATAGGTATAATGTAATTAAGGTTTTAAAAAAAATAGACATAGTTA 3981
Query 454 -------------------------------------------------------------------------- 453
Sbjct 3982 TTCAGATTAGGACCAGTAAGGATAGAACTTTCTCTTATTTATGAAAAGAAAAAAAATGCTAATAATTTGGGGGC 4055
Query 454 -------------------------------------------------------------------------- 453
Sbjct 4056 AGTTTTTTCCTTTTTTTTTTTTTCCAAGTTCAAATTTACTTTTATTTTTGCTGATTTGATGTGGTTTCAACTAA 4129
Query 454 -------------------------------------------------------------------------- 453
Sbjct 4130 CCCAAGGTCTCACAATGTTCAAATGGCGGCTGACTCTACAGCATTCTGTAGGTCCCTGCCCCCCTAGCTGAAGG 4203
Query 454 -------------------------------------------------------------------------- 453
Sbjct 4204 GGTGTGCCATACTACCTTAAATGCAAACACTAGATATGCAAAACTGGATTTTTTTAATTTATTTTTTAAAAGAG 4277
Query 454 -------------------------------------------------------------------------- 453
Sbjct 4278 GGAGGTGTGGTATATTAAAATGATTTTACTAAGAGAAAAAAAATATTTTTTTAAGGATGCTCAGAAGAAATTGA 4351
Query 454 -------------------------------------------------------------------------- 453
Sbjct 4352 TAATCTGTGTGAATATGTTTTAGATGTTTATATACATTTTGAAGAGACCCAGTAGCCCATAGCACAAATCTTGT 4425
Query 454 -------------------------------------------------------------------------- 453
Sbjct 4426 GAACATCTGATATGTTTTCAAGTGGCTACCTAGGATAAGGTTCATCATTAGTACCCCCACCCCCACCCCACCGC 4499
Query 454 -------------------------------------------------------------------------- 453
Sbjct 4500 CATCTAGAAGTCCATCTTAAACAATTTTTTGTAAATTCTTTCAGCACTGGTGTCCATCTTTGTCTTTGTTTCAG 4573
Query 454 -------------------------------------------------------------------------- 453
Sbjct 4574 TTAAGCTCAATAGCGAATGTGGGACCCCCTCCTCTGACCTTCCCTGGGGGAGAAACCCTCTTGGCTAATGGCTC 4647
Query 454 -------------------------------------------------------------------------- 453
Sbjct 4648 TTCCCTGGCATTATCAATAACCACCCGGGGACTCTCTGGCTTTCAGATCCATCTGCCTGAGACCCCAAGGTCCT 4721
Query 454 -------------------------------------------------------------------------- 453
Sbjct 4722 CTCCTCCCTAGAGGGGAGGTGGAGCAGCAGTTGACTCCTGGTTCCCTCCCTATTTCAGCCTGGATGTGGGGCTG 4795
Query 454 -------------------------------------------------------------------------- 453
Sbjct 4796 GTGGAGATGCCTCCACCCCAGGAGCCTCTGCATATGTGGTTCGTGGCCTTCTTCTCACCCATTGGGAAAACCAA 4869
Query 454 -------------------------------------------------------------------------- 453
Sbjct 4870 ACAGCCTCACACTCTGTCCCCATCGCTCATTGGCTTAACTCAAGTGAGACCCCAACTGGGCCTTTGCGTTTTGT 4943
Query 454 -------------------------------------------------------------------------- 453
Sbjct 4944 TTTTGTTTTTTTTTAAATCCTTCATGACCATTCTCTTAATTTGAACTCGTAGCTTGGGCTTTAAGGTAGCATGG 5017
Query 454 -------------------------------------------------------------------------- 453
Sbjct 5018 CTCGATTGCTGTCGACTTAATGTTCCACTGCACAGCAATTCACGGCCAGTGAATGTTACACACATCTTGCTAGA 5091
Query 454 -------------------------------------------------------------------------- 453
Sbjct 5092 CTAGTATAAAAATCATTGGGTAATTGTTGGTTCTAATGACCTGAAAGGTGTTCAGTTTGTGGGTTTTTTTTGGG 5165
Query 454 -------------------------------------------------------------------------- 453
Sbjct 5166 GGGGGCTGCTTGGGGGGTTGTTTTTCCTTCTTTGTTTTTTTTTAATTTGAGAATTTAGGGGGATAATTTTTGGG 5239
Query 454 -------------------------------------------------------------------------- 453
Sbjct 5240 GGGGGGTTCCAAATAAAAAAATAGAAAGCTATTTTGATCTTTAGTGCAAACTAGGGACGTAGCCTCCATCACCA 5313
Query 454 -------------------------------------------------------------------------- 453
Sbjct 5314 CAACCACACCGCTTCGCTCTGCCATCCACCCACCGCAGCAGCATCTTCAAGAATAAAGCAATATAGTTTACTAC 5387
Query 454 -------------------------------------------------------------------------- 453
Sbjct 5388 ATTTTTTTTTAAAATTGAAGGTCAGCCATGCTTTCTGTATTATATTGCATATGAAATTGTTTACAAAAGAAACA 5461
Query 454 -------------------------------------------------------------------------- 453
Sbjct 5462 CTAACTCATCCTTCTCTTTATCAGTTGAAAGTGACACACGGGACAGAGGGAAATTGGAGGGCAGGTGAGGGAGG 5535
Query 454 -------------------------------------------------------------------------- 453
Sbjct 5536 GGAGAGGGTTTTTTTGTATTTTGGTTTGTTTGGTTTTGGTTTCTTTTCTTGAATGTGCTTTAGTAGCCAGATCC 5609
Query 454 -------------------------------------------------------------------------- 453
Sbjct 5610 TCCAAGGAAGGCAAAAGCCAGCCAGCCAGAGAGAGAGTAGCGAAGCGGGCAGGCTGCAGGTAAGCACACTGAAC 5683
Query 454 -------------------------------------------------------------------------- 453
Sbjct 5684 AAGAGACACACTGGCAAGCTCCCCCACCTCAGCGAGAGCAGAAAGCGAACAGCTCAGCCCAGTCCTGGGCACAG 5757
Query 454 -------------------------------------------------------------------------- 453
Sbjct 5758 ACACTACACAAGGCAATGCTGGAATTGAAACAATACTTTAATACCGTTTAAGTTTGTTTCCTTTTTTTTTTTCC 5831
Query 454 -------------------------------------------------------------------------- 453
Sbjct 5832 TCTTTTTTTTTTCTTTCACCAAGAAAAGAAAAAAGTAAACTAAAATACAAAATACAAAAACAAACAAACAAACA 5905
Query 454 -------------------------------------------------------------------------- 453
Sbjct 5906 ACAACCCATATAAATAAAACCCACCCCTCTCTGGGAAACAACCATAATTCAAACATGGCTATTTAGTAATCAGA 5979
Query 454 -------------------------------------------------------------------------- 453
Sbjct 5980 AGGTATTGTCTCAGACAGGATTTCATTTCCGGGAGGCAGGGCGTGAGGGGGGAGGGGAGTGGGACTGAGAGACA 6053
Query 454 -------------------------------------------------------------------------- 453
Sbjct 6054 GTTCCAGAGCCTCCAGGGAAGGCTTCTACTGCTAACTGCTGTATTCTGTATATACTGTGCCACCCTGTGTGGAG 6127
Query 454 -------------------------------------------------------------------------- 453
Sbjct 6128 TCTGTGAGTGTGCTCTTGAGTAGCGTGGGCTAGCCAATCTGCCATTCATGGTGTTATAAACTCGGAATTCCATA 6201
Query 454 -------------------------------------------------------------------------- 453
Sbjct 6202 TGTAATAGGATGCAAGTCTAAGCGTTTCATGTGGACATAAATGTATCTAAATAAAACTTCCCCTAGCACTGTGG 6275
Query 454 -------------------------------------------------------------------------- 453
Sbjct 6276 CTGACCTCACCCTTACTTTTATACTTTAGTATGAAACTGATGAGAACTTTGGTAGTGAGTATTTTTTTTATATA 6349
Query 454 -------------------------------------------------------------------------- 453
Sbjct 6350 TATACATATATATGTATCTATATATATATATATATCTCAAGCATCTTTCAGGTCTTTGTGTGTGGCTTTCTTAA 6423
Query 454 -------------------------------------------------------------------------- 453
Sbjct 6424 AGCCCTGTTGTAAAAAAAAAAAAAATTACTAAGTGGATGGCAGTCTCTCACATCACAGATGTGGAAAGTATAAT 6497
Query 454 -------------------------------------------------------------------------- 453
Sbjct 6498 TTTATATTTGTATTTTCAAATAAATAAGTTTGTGAAAGGTTTCCATCCTCTACTGTGGTCCAGAAATCAATGTG 6571
Query 454 -------------------------------------------- 453
Sbjct 6572 TTTGTCTGACAAAAAAAATAATAAAATAAACTGTTTTGAACAGA 6615
