Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13380
Subject:
XR_376327.1
Aligned Length:
3318
Identities:
425
Gaps:
2844

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGGCGCCTGCCACCGCCTCCTGGGCGGGAGCTTCCTGTGGCTGTCTCCGCCGCGGCCGCCCGGGGGCCGCGGAA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AGCTAGGCGGTTCCGGGCTCGAGAAGGCCCGGTTTTGGTTCGGATCCGCCGCGAGGTATCTAGCCTGCCAAGAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCCAGGGCCAAGACCTCGGAAGGGCCCTAAGACCAGTGGCCAGGGTGCTGAGACTGCCAAGCAGCTGGGGCTTT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TTGTGGAGTTCAACCCTGAGGACATGCTCCTGGGGGTGGATGAGACTGAAGATGATGGAGACCTGGAGGCTGAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TTACTGGCACTCACAGGGGAAACAGCGAGCAGGAGCAGGAAGCCAGCACCCAAGGGGCAGGCTCCACTGCCCAT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGCCCACATTGAGAAGCTGGCAGCAGACTGTATGCGAGATGTGGAGGAGGATGAAGAAGAGGAAGGGCTGGAGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACGATGCAGACCTTCTGACAGAGCTGCAGGAGGTCCTGGGTGAGGATGAAGAAGCGGGTCTGCTGGACGGCAGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAGGCAGCAAGTCCAGACCTCTGTGAGGAGAAGACTTGGGACAACACTGAACTACCTGTAGAGCAGGCAGCCTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCAACAGGCAGTACCTGCTGCAGCTCAGGCTGGAGGGCCTCGGGGGCTGCAGGCTTTGCTGGAGGAACGGATCC  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GTAACTACCGGGAGGCCGCAGCCAGTGCCAAGGAGGCTGGTGAAGCTGCCAAAGCCCGGCGCTGTGAGCGAGGC  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTAAAGACTCTGCAGTCCCAGCTTGCCACTGTGAGGAAAGGCGGGAAGATCTGTGAGGATGAGATCCCACCTCC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGTAGCCTTGGGCAAAAGGCCCCCAGCCCCCCAGGAAAGAGCCATCAAGAACCCTGAGATAGACTCTCCAGGTC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCTGTGCCATGGAGCCAGGCAACCTTTCCCAGCCCGAGTCCAGCCTCCCTGCCATTGCTCCCTTGCCTGATTCA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GACCCAGACCCACAAGCCCTGCTGTTAGCCCGACAGAGAGAGTACAAGGCGGCTGCTCTCGATGCCAAGCGGGC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TGGAGATCTAGACCGTGCTCGGGAGCTCATGAGGATCGGGAAGAGATTTGGTACTGTCCTAGAGGCCCTGGAAA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  AGGGTCAGCCTGTGGACCTGAGTGGCATGCCCCCAGCACCTGCGGATCTGAAGGCCCTCCCCCAGGCTTCTAAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GCCTCCTCAGCAACCCAAGGCCTGTCCCCAGCAGTAGAGCAAATGCAGCCAGTGATGGCCTCTGACCTCCCAGC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CACCCCAGTGGCCCCTGCGGAGCCAACAACAGTGCTGGATGCTTTACAGCAAAGGCTGAACAAGTATCGTGAGG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CAGGCATCCAGGCCCGGGCCAATGGGGATGAGCGCAAGGCCAGGATGCACGATCGCATTGCCAAGCAATATCAG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GATGCTGTTCGAGCTCATCAGGCAGGACAGAAAGTTGACTTTGCCGAGTTACCTGTTCCTCCAGGATTTCCTCC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  CATCCCTGGCCTGGAGCCCAGGAAAGGTAGTGAGCAGGATTCAGTGGCAGCAACTTTAGCAACTGCCCAAAAAC  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  TGGCCTCAGAAGATGCAGCCCTGGTAGATGACGACGAGGAGAGTGACACTCCAGCACAGGCCCCATTGGCCAAG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AAGCCAGCGCAGACTCTGGTCTCTCCATCCCATCTTCTGACTGAGCCCAAGGCTTCAAGTTCTAAGGAGTCACT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GAGTCCATCTGTTCGGGAGCAGGTGACACTGCTGGAGGCTCGGAAACTGCAATACCAGCGAGCAGCTCTGCAAG  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CCAAGCGCAGGCAGGATCTTGAGCAGGCCAAATCCCACTTACGAGTAGCTAAAAGTCTTGAGGCTCAGATCATC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CAGGCCCGAGCTGGTCAACCCATTGATCTCTCCAAGGGGCCTTATGATCTGGGCAGGTGCCTTCACCGTTGACA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  GATGAAGAGGGGGACTTCATCCTCATTCACCATGAGGATCTGCGACTCTCCCAGAAGGCTGAGGAGGTGTATGC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CCAGCTACAGAAAATGCTCCAGGAGCAGCAAGCGAAGTGCCTGCTATTCTCCAAGCAGTACATGCACCAGGGAA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATGTGGCTGAGACCACTCGGTTTGAGAGGCTTGCGGAGGACCGAAAGAAACAGCTTGAGATCCTGCAGCTAGCC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CAAGCCCAGGGCCTTGACCCTCCTAGTCATCACTTTGAGCTGAAGACATTCCAGACTGTGAGGATCTTCTCAGA  2220

Query    1  ----------------ATGCATCTGATCATTGTCCGGGGAATGAACCTCCCAGCCCCTCCAGGGGTGACTCCCG  58
                            ||||||||||||||.||.|||||||||||||||||||||||.|||||.||||||||.|
Sbjct 2221  ACTCAACAGCACAGAAATGCATCTGATCATCGTGCGGGGAATGAACCTCCCAGCCCCGCCAGGAGTGACTCCGG  2294

Query   59  ATGACCTGGATGCTTTTGTGCGGTTTGAGTTTCACTACCCTAACTCGGACCAGGCTCAAAAAAGCAAAACAGCT  132
            |||||.|||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  ATGACTTGGATGCTTTTGTACGGTTTGAGTTTCACTACCCTAACTCGGACCAGGCTCAAAAAAGCAAAACAGCT  2368

Query  133  GTGGTGAAGAACACAAACTCTCCAGAATTTGATCAACTCTTCAAACTAAACATCAACCGAAACCACCGGGGCTT  206
            |||||.||.||.||.||.||||||||||||||.|||.|.|||||.|||||||||||.|||||||||||.|||||
Sbjct 2369  GTGGTAAAAAATACCAATTCTCCAGAATTTGAACAAGTTTTCAAGCTAAACATCAATCGAAACCACCGAGGCTT  2442

Query  207  CAAGAGGGTGATCCAGAGCAAAGGCATCAAGTTTGAGATCTTCCACAAAGGGTCCTTCTTCAGAAGCGACAAGC  280
            .|.|||.|||||||||||||||||.|||||.||||||||||||||||||||.|||||.||.|||||.|||||||
Sbjct 2443  TAGGAGAGTGATCCAGAGCAAAGGAATCAAATTTGAGATCTTCCACAAAGGATCCTTTTTTAGAAGTGACAAGC  2516

Query  281  TGGTTGGCACAGCACACCTGAAACTGGAGCGGCTGGAGAATGAGTGTGAGATCAGAGAAATTGTGGAGGTCCTG  354
            |||||||||||||||||.|||||.||||..||||||||||.|||||||||||||||||.||..|||||||..||
Sbjct 2517  TGGTTGGCACAGCACACTTGAAATTGGAAAGGCTGGAGAAGGAGTGTGAGATCAGAGAGATCATGGAGGTTTTG  2590

Query  355  GATGGAAGGAAGCCCACCGGGGGGAAGCTGGAGGTGAAGGTGAGGCTGCGGGAGCCTCTGAGTGGCCAGGATGT  428
            |||||.||.||||||||.|||||||||||||||||||||||||||||.||||||||||||||..|||||||.||
Sbjct 2591  GATGGCAGAAAGCCCACTGGGGGGAAGCTGGAGGTGAAGGTGAGGCTTCGGGAGCCTCTGAGCAGCCAGGACGT  2664

Query  429  GCAGATGGTCACTGAGAACTGGCTGGTTCTGGAGCCCAGGGGCTTG----------------------------  474
            |||||.|||||||||||||||||||||.||||||||..|||||.||                            
Sbjct 2665  GCAGACGGTCACTGAGAACTGGCTGGTCCTGGAGCCTCGGGGCCTGTGAAGAGGTGGACATCCTTGGTAACAGC  2738

Query  475  --------------------------------------------------------------------------  474
                                                                                      
Sbjct 2739  TCACTGACCCAGCTGTGCCGGCTCAAGAGCCGTTGTACATCAGAGATGCTGCTACACACGCACCAAAGACCTGA  2812

Query  475  --------------------------------------------------------------------------  474
                                                                                      
Sbjct 2813  TAACTAACAGTGGCCTGGGCTTTCCTCCTGCTGCCTCTCCTGGACCTTCGTGGAAGCAGGCCTCCCACCCTCCC  2886

Query  475  --------------------------------------------------------------------------  474
                                                                                      
Sbjct 2887  TGTGGGCGAAGACAAGGATACCCCACTGCTCTGTGCCACAGAGTCCCGTAACCGCTGCATAGTAATTGCGTACC  2960

Query  475  --------------------------------------------------------------------------  474
                                                                                      
Sbjct 2961  GCTTAACCCAGCCCCCATTTGCACCATTTCTGGATGTGCCTTTCAAAGATGTAACTGTAGGGATGGGAGAACTC  3034

Query  475  --------------------------------------------------------------------------  474
                                                                                      
Sbjct 3035  GAGGGTGATCGGAACATCCCGTGTGGGGAGGGACAGGATTCCGTGACTCCAGCTGGCCAGCGGCAGACTGTCCC  3108

Query  475  --------------------------------------------------------------------------  474
                                                                                      
Sbjct 3109  GCTCAGCTGTTTTCCCTCTGCCTGTGCCTTTGTTCCTGACAGCTGCTGCACTAGCCTTTCTGCTTCCCAGAGGA  3182

Query  475  --------------------------------------------------------------------------  474
                                                                                      
Sbjct 3183  CTCGGGAACAGGAACGTTACTTTGGTACTATTGGTGGGAAGTAAGGGAAGGTTCTCTTTGGTTTGGTCCATGTA  3256

Query  475  --------------------------------------------------------------  474
                                                                          
Sbjct 3257  CCTAAGGTGAAAGACTGTTAATTGGGGAGAAAAAAAGGAAAAAAGAAAAAGAAAAACTATCA  3318

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