Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13437
- Subject:
- XR_001747061.1
- Aligned Length:
- 3487
- Identities:
- 865
- Gaps:
- 2620
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TAATGGGGAGGCCAAAGAGACACAGCCCATTTTTTTAGGAGATGAAAGCATGGAAATAAAAAAGCAAATTACAG 74
Query 1 --ATGAGAAGATTGCTGAACGACAGCACTGGGCGGATCTATCAGCGAGTTGGCAAAGAAGGAGAGAAACTAAAA 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GGATGAGAAGATTGCTGAACGACAGCACTGGGCGGATCTATCAGCGAGTTGGCAAAGAAGGAGAGAAACTAAAA 148
Query 73 GAAGAGCCCCAGGACCTGGATTTAGTCTGGCCTCCACGTTTGAACTCCTCTGCTGAGGCCCCGCAAAGCCTCCA 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GAAGAGCCCCAGGACCTGGATTTAGTCTGGCCTCCACGTTTGAACTCCTCTGCTGAGGCCCCGCAAAGCCTCCA 222
Query 147 CCCGTCTTCACGTGGTGTGTGGAATGAGCTACCGCCCCAGAGTGGACAGTTCTCAGGGCAGTATGGCACCCGTT 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCCGTCTTCACGTGGTGTGTGGAATGAGCTACCGCCCCAGAGTGGACAGTTCTCAGGGCAGTATGGCACCCGTT 296
Query 221 CTAGAACCTTCCAAAGCCAGCCCCACCCTACCACGAGCTCCAATGGTATGGTTGTCAACAAACATTCAGAAGGC 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CTAGAACCTTCCAAAGCCAGCCCCACCCTACCACGAGCTCCAATGGTATGGTTGTCAACAAACATTCAGAAGGC 370
Query 295 TCTCATGGGGGAGAACTTCCAGTGGTGAATTCATCAGCTGGATCAAACTGCTGTACTTGTAACTGCCAGTCAAC 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCTCATGGGGGAGAACTTCCAGTGGTGAATTCATCAGCTGGATCAAACTGCTGTACTTGTAACTGCCAGTCAAC 444
Query 369 GTTGCAGGCCATTCTACAAGAACTCAAGACCATGAGGAAATTAATGCAAATTCAAGCAGTTGGAACTCAAAACA 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTTGCAGGCCATTCTACAAGAACTCAAGACCATGAGGAAATTAATGCAAATTCAAGCAGTTGGAACTCAAAACA 518
Query 443 GACAACAACCTCCAATTTCCCTTATATGCTCCCAGCGAACTGCTGTCTCACGAAAGAGAAATAAAAAGAAAAAA 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GACAACAACCTCCAATTTCCCTTATATGCTCCCAGCGAACTGCTGTCTCACGAAAGAGAAATAAAAAGAAAAAA 592
Query 517 GTGCCCCCAAAGACTGTGGAACCTCTTACTGTGAAACAGAAGCCCAGTGGGTCAGAGATGGAGAAAAAGTCGGT 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTGCCCCCAAAGACTGTGGAACCTCTTACTGTGAAACAGAAGCCCAGTGGGTCAGAGATGGAGAAAAAGTCGGT 666
Query 591 GGTGGCCTCTGAGCTATCTGCTCTCCAGGCAGCCGAGCACACCTCCCCGGAGGAGAGCCGCGTTCTAGGATTCG 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GGTGGCCTCTGAGCTATCTGCTCTCCAGGCAGCCGAGCACACCTCCCCGGAGGAGAGCCGCGTTCTAGGATTCG 740
Query 665 GCATTGTTCTGGAATCACCTTCCTCAGATCCAGAAGTACAACTTGCTGAAGGCTTTGACGTGTTTATGCCTAAA 738
|||||||||||||||||||||||||||||
Sbjct 741 GCATTGTTCTGGAATCACCTTCCTCAGAT--------------------------------------------- 769
Query 739 TCTCAGCTGGACTCTATATTGTCAAACTACACTCGCTCAGGAAGCCTTCTGTTTAGAAAACTGGTGTGTGCGTT 812
Sbjct 770 -------------------------------------------------------------------------- 769
Query 813 TTTTGATGACAAGACTTTGGCTAACTCCTTACCCAATGGGAAGAGGAAAAGAGGACTCAATGACAACCGGAAAG 886
Sbjct 770 -------------------------------------------------------------------------- 769
Query 887 GACTAGACCAAAATATTGTGGGTGCAATAAAAGTCTTCACAGAAAAGTACTGTACAGCTAACCATGTGGATAAG 960
|||||||||||||||||||||||||||||||||||||||||
Sbjct 770 ---------------------------------TCTTCACAGAAAAGTACTGTACAGCTAACCATGTGGATAAG 810
Query 961 CTTCCTGGCCCAAGAGATTGGGTGCAGATTCTACAGGATCAAATTAAACTGGCCAGAAGAAGGTTAAAAAGAGG 1034
|||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 CTTCCTGGCCCAAGAGATTGGGTACAGATTCTACAGGATCAAATTAAACTGGCCAGAAGAAGGTTAAAAAGAGG 884
Query 1035 CT---CAGAGATCGCGGACAGTGATGAAAGACTGGACGGCATTGCTCTACCACCAACAGTGGTC---------- 1095
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||.
Sbjct 885 CTCAGCAGAGATCGCGGACAGTGATGAAAGACTGGACGGCATTGCTCTACCACCAACA--GGTAATATATTTGA 956
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 957 CACCAGGAGAGAAAACACGGAGGACACAGAACCAGGTTTCATTGCCTAGACTTTGATTTTAGTGACATTGTTGA 1030
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1031 GTGGCATATGTAACTTCCGTTTGAATTTCCACAAAGATCCACGTAGCATTTCAGGTTCCTGCAAAGTGTGGGTG 1104
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1105 TTCTGTCAAGCTTACCTGTCATGTTTGAATAGTTTCATATACTTTCTTTGTAATGTGTGATAACCAAGCCTCCA 1178
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1179 ATCTGGTATAAGATTTTTTAAATCATTTTTAGGGTTGATTTGTTACCCTTTAAAAGTCCAGCATATGATTCAGT 1252
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1253 GAGTTCATTGTCCATTATAAAGAAGTGGTTCTCTCTTCCCTGTTTTCATTCAAAACCTCAGTATGAATATAGAG 1326
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1327 CTTTGAAACGTATTTATTTTAATGTAAATTGCTTAGATGCAGTATAAAGGAGAATGGCTCTTTCCAGTGCTGAG 1400
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1401 AGAGCAGTTGTGAAGGCCAAGATTAATTAGACCTTCATCATCTTAGAAGATGAAAAAGTTGTTTTGGGAGATAG 1474
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1475 GATAGCTCTGACCTGTAAGATGAAATCATTCATGACGTCAGTGCCCCCCAAATAGCCATTTGTAACTGAGTAAG 1548
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1549 TGCAAATGACCTATGAGTTCTTAGGAAAGAAAAACCTTTCACCTAAGTTGCGTCAACACAATGACAAAATAACT 1622
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1623 AATTAAAAGGTGAGAAAACCAGTAAATTATCTACATGATACCTGACAGCCATTTTAACAGATGGTCTTAACGGA 1696
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1697 GTGCTACAGGGTTTTGGCACCATGTGGTAACTAGCTAAAAATGTACTTAATATTATGTCATTTATTTGGTTCCT 1770
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1771 AGTATACTTGCCCTCCACTTTATATAAAACTAATTTATGAAAATCTGGATTTATTTTAAAAAGATATCTTGCCA 1844
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1845 TGAAGGTATTTGTTTTATAGAAATATTTACCTCCAGATTTCTTTCTCTAATAAGATGGTGAATTTAAAACACTG 1918
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1919 TGTTATTTAGAAACACTGCATTTACACTTCATTTATTGTATAAAGCAAATTGCATTGAATCTTCGCCACTTGAC 1992
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 1993 CCAAAGGCCAAAAATTGGCATGAGAACAATTTGGACTACACATCACCAAACCCGGGGTTCACACCTGTCCACTA 2066
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2067 GCAGTTCCAGTGCCTTCCCCTAGCCCTGGATTTGGCAAAGCACAGAATGTTAAGAGCTAAAAGTTATTGTAGAG 2140
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2141 GCTACTCAGTCCCACCCGGGAAACTGAGGATGAATGAGGGTAAGCGGTTGCCCAGAGCCCGTTAACCCCTCCGT 2214
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2215 GGCTGGGGCCCTGCCTAGAACCCGAATTTCCTGACTACCCTGTCCAAGGTATTCATGTCACATCACACTGAAAC 2288
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2289 GCTAAACCTAGAGATAGGAGAGGCCCTCTGGGATAAATCCCTGTTCCACCAAAGACCAGCCAGTCATCAAAGAT 2362
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2363 GAGAGAAGGCATCCCTGTACTGTAACAAAAAGCTGGCTTTAGGCGTGGCTTGTAGAATCAATCTAACTACTAGA 2436
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2437 CAAGTTACATCTCATATATGTGTGGCTTCTTTTTCTTCTTTTGGGGGGCTACAAGGAAGGTTTGGAGAAATTAT 2510
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2511 TTCCATCATACCTTTTTGTTAGCCTTTTTCCATTTCTGGCCAGTAAGTAATCCCGTTCCTGACAACAGTCCCTT 2584
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2585 TGTTTTCTCAAGTGGTCTGATGAAGGACTGCAAACCACAGCTCTTGTGTTTTTTGCACCATGGGTTTTAAAATC 2658
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2659 CGTCCTCTGCCTCCCACAAGGAGCTACTACCCAAGGGAAGGGAGAAGATTAATTGGTGACCTTTCGCCGTGTTA 2732
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2733 AAATAGGATGAGTATGTTGCTGGTCAAGGCAGAAACGCTAACTTCCAACTGTGGTCTGTTAAGAGATCTGCTGG 2806
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2807 GAACCTTCAGAAGCACTGCCTTCCAAGGCGGGGCCACAGCTTGGGGTGTTCAGCACTTGAGGACGGGTGGAGCT 2880
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2881 TGTTCAACCCAAAGATGTGTGCGATGAACGGATCTACACACTGGAAATACGTATCAAAACTGCAACAGCAAAAT 2954
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 2955 CATATTTTGTAAATTAAAATTGTGTTTACTTACTGTGACTACTGTTCAGTCTTTATTCAGAAACCTTTTTATAG 3028
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3029 GCTTTCTTAGCAAAAAAAAAATCCATATCTATGGATAATGTCTCAATCTTCTGTATATATGTTTTATTAATATG 3102
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3103 TAAATATTTAGATTTTTTAAAATTACTATGTTCTTTAAAAAAGAATTCAATGCAAGCCTGGTTGTGAAAATGGT 3176
Query 1096 -------------------------------------------------------------------------- 1095
Sbjct 3177 GTATAACATTGTGTTGTGGTATCAATTCCCAAGATGCTCTTTATGTCTGATCTGGAAGAATACAATAAATTACT 3250
Query 1096 --------- 1095
Sbjct 3251 TTAATTGAA 3259
