Construct: ORF ccsbBroadEn_13437
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005203.1_s300c1, BRDN0000389113
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BEND7 (222389)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 222389 | BEND7 | BEN domain containing 7 | NM_001100912.1 | 97.5% | 97.5% | 1_27del;1011A>G |
| 2 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519411.2 | 97.5% | 97.5% | 1_27del;1011A>G |
| 3 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519408.2 | 97.2% | 97.3% | 1_27del;1011A>G;1064_1066delCAG |
| 4 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519410.3 | 96.9% | 96.8% | (many diffs) |
| 5 | human | 222389 | BEND7 | BEN domain containing 7 | XM_024447885.1 | 96.9% | 96.8% | (many diffs) |
| 6 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519407.1 | 96.7% | 96.5% | (many diffs) |
| 7 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519405.2 | 96.7% | 96.5% | (many diffs) |
| 8 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519406.2 | 96.7% | 96.5% | (many diffs) |
| 9 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519404.3 | 96.4% | 96.2% | (many diffs) |
| 10 | human | 222389 | BEND7 | BEN domain containing 7 | NM_001370075.1 | 93.5% | 93.3% | (many diffs) |
| 11 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519403.2 | 93% | 93% | (many diffs) |
| 12 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519402.2 | 92.8% | 92.8% | (many diffs) |
| 13 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519401.2 | 92.6% | 92.6% | (many diffs) |
| 14 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519400.2 | 92.3% | 92.3% | (many diffs) |
| 15 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519399.2 | 92.1% | 91.8% | (many diffs) |
| 16 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519398.2 | 91.9% | 91.6% | (many diffs) |
| 17 | human | 222389 | BEND7 | BEN domain containing 7 | NM_001369863.1 | 82.5% | 82.6% | 1_183del;447_448ins39;1128A>G |
| 18 | human | 222389 | BEND7 | BEN domain containing 7 | XM_017015918.1 | 82.3% | 82.4% | (many diffs) |
| 19 | human | 222389 | BEND7 | BEN domain containing 7 | XM_017015919.2 | 82.1% | 81.9% | (many diffs) |
| 20 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519412.1 | 78.8% | 65.7% | 1_27del;720_721insCCAG;912_913ins206 |
| 21 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519391.2 | 75.9% | 75.6% | (many diffs) |
| 22 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519390.2 | 75.7% | 75.4% | (many diffs) |
| 23 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519394.2 | 75.7% | 75.4% | (many diffs) |
| 24 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519395.2 | 75.7% | 75.4% | (many diffs) |
| 25 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519396.2 | 75.7% | 75.4% | (many diffs) |
| 26 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519397.2 | 75.7% | 75.4% | (many diffs) |
| 27 | human | 222389 | BEND7 | BEN domain containing 7 | XM_017015915.1 | 75.7% | 75.4% | (many diffs) |
| 28 | human | 222389 | BEND7 | BEN domain containing 7 | XR_930481.1 | 73% | (many diffs) | |
| 29 | human | 222389 | BEND7 | BEN domain containing 7 | NM_152751.2 | 73% | 72.7% | (many diffs) |
| 30 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519393.3 | 72.1% | 71.8% | (many diffs) |
| 31 | human | 222389 | BEND7 | BEN domain containing 7 | XR_930480.2 | 71.7% | (many diffs) | |
| 32 | human | 222389 | BEND7 | BEN domain containing 7 | XM_011519392.2 | 66% | 65.7% | (many diffs) |
| 33 | human | 222389 | BEND7 | BEN domain containing 7 | XM_005252402.5 | 65.9% | 65.6% | (many diffs) |
| 34 | human | 222389 | BEND7 | BEN domain containing 7 | XR_930474.3 | 60.9% | (many diffs) | |
| 35 | human | 222389 | BEND7 | BEN domain containing 7 | XR_930479.1 | 60.3% | (many diffs) | |
| 36 | human | 222389 | BEND7 | BEN domain containing 7 | XR_930476.2 | 47.4% | (many diffs) | |
| 37 | human | 222389 | BEND7 | BEN domain containing 7 | XR_930475.2 | 47.3% | (many diffs) | |
| 38 | human | 222389 | BEND7 | BEN domain containing 7 | XR_002956970.1 | 45.8% | (many diffs) | |
| 39 | human | 222389 | BEND7 | BEN domain containing 7 | XR_930482.2 | 39.7% | (many diffs) | |
| 40 | human | 222389 | BEND7 | BEN domain containing 7 | XR_002956969.1 | 33.1% | (many diffs) | |
| 41 | human | 222389 | BEND7 | BEN domain containing 7 | XR_002956968.1 | 33% | (many diffs) | |
| 42 | human | 222389 | BEND7 | BEN domain containing 7 | XR_930478.2 | 24.8% | (many diffs) | |
| 43 | human | 222389 | BEND7 | BEN domain containing 7 | XR_001747061.1 | 24.8% | (many diffs) | |
| 44 | human | 222389 | BEND7 | BEN domain containing 7 | XR_930472.1 | 17.5% | (many diffs) | |
| 45 | human | 222389 | BEND7 | BEN domain containing 7 | XR_930473.1 | 14.7% | (many diffs) | |
| 46 | mouse | 209645 | Bend7 | BEN domain containing 7 | XM_006497445.3 | 76.3% | 76.4% | (many diffs) |
| 47 | mouse | 209645 | Bend7 | BEN domain containing 7 | XM_011238968.2 | 76.3% | 76.4% | (many diffs) |
| 48 | mouse | 209645 | Bend7 | BEN domain containing 7 | NM_001190400.1 | 67.6% | 67.7% | (many diffs) |
| 49 | mouse | 209645 | Bend7 | BEN domain containing 7 | NM_178663.4 | 67.4% | 67.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1161
- ORF length:
- 1095
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG AAGATTGCTG AACGACAGCA CTGGGCGGAT CTATCAGCGA GTTGGCAAAG 121 AAGGAGAGAA ACTAAAAGAA GAGCCCCAGG ACCTGGATTT AGTCTGGCCT CCACGTTTGA 181 ACTCCTCTGC TGAGGCCCCG CAAAGCCTCC ACCCGTCTTC ACGTGGTGTG TGGAATGAGC 241 TACCGCCCCA GAGTGGACAG TTCTCAGGGC AGTATGGCAC CCGTTCTAGA ACCTTCCAAA 301 GCCAGCCCCA CCCTACCACG AGCTCCAATG GTATGGTTGT CAACAAACAT TCAGAAGGCT 361 CTCATGGGGG AGAACTTCCA GTGGTGAATT CATCAGCTGG ATCAAACTGC TGTACTTGTA 421 ACTGCCAGTC AACGTTGCAG GCCATTCTAC AAGAACTCAA GACCATGAGG AAATTAATGC 481 AAATTCAAGC AGTTGGAACT CAAAACAGAC AACAACCTCC AATTTCCCTT ATATGCTCCC 541 AGCGAACTGC TGTCTCACGA AAGAGAAATA AAAAGAAAAA AGTGCCCCCA AAGACTGTGG 601 AACCTCTTAC TGTGAAACAG AAGCCCAGTG GGTCAGAGAT GGAGAAAAAG TCGGTGGTGG 661 CCTCTGAGCT ATCTGCTCTC CAGGCAGCCG AGCACACCTC CCCGGAGGAG AGCCGCGTTC 721 TAGGATTCGG CATTGTTCTG GAATCACCTT CCTCAGATCC AGAAGTACAA CTTGCTGAAG 781 GCTTTGACGT GTTTATGCCT AAATCTCAGC TGGACTCTAT ATTGTCAAAC TACACTCGCT 841 CAGGAAGCCT TCTGTTTAGA AAACTGGTGT GTGCGTTTTT TGATGACAAG ACTTTGGCTA 901 ACTCCTTACC CAATGGGAAG AGGAAAAGAG GACTCAATGA CAACCGGAAA GGACTAGACC 961 AAAATATTGT GGGTGCAATA AAAGTCTTCA CAGAAAAGTA CTGTACAGCT AACCATGTGG 1021 ATAAGCTTCC TGGCCCAAGA GATTGGGTGC AGATTCTACA GGATCAAATT AAACTGGCCA 1081 GAAGAAGGTT AAAAAGAGGC TCAGAGATCG CGGACAGTGA TGAAAGACTG GACGGCATTG 1141 CTCTACCACC AACAGTGGTC TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 1201 attgcttatc aatttgttgc aacgaac