Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13547
- Subject:
- NM_001353158.1
- Aligned Length:
- 2853
- Identities:
- 1801
- Gaps:
- 1041
Alignment
Query 1 ATGAACTTGGGAGATGGTTTAAAGCTTGAAACTGAATTACTGGATGGAAAAACCAAGCTAATATTGTCTCCATA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 TGAACATAAATCAAAAATTTCTGTGAAGATGGGAAATAAGGCCAAGATTGCAAAATGTCCTTTAAGAACAAAAA 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CTGGGCACATTCTAAAATCAACACAAGATACTTGTATTGGGAGTGAAAAACTTTTGCAAAAGAAGCCAGTTGGT 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 TCAGAAACATCACAGGCAAAAGGTGAAAAAAATGGAATGACTTTTTCATCCACTAAGGATTTATGTAAACAATG 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 TATAGATAAAGACTGTCTTCATATCCAGAAAGAGATTTCACCTGCAACTCCTAATATGCAGAAGACTAGAAACA 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 CCGTAAATACATCTCTAGTAGGTAAACAGAAGCCTCACAAAAAACACATCACAGCTGAAAACATGAAGAGCAGT 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 TTGGTGTGTCTAACACAAGACCAACTACAACAGATTTTGATGACTGTAAACCAAGGAAATAGATCTCTTTCCCT 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 GACTGAGAATGGAAAGGAGGCAAAAAGTCAATATAGTCTATATTTAAACAGTATTTCTAATCAGCCAAAGGATG 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 AGAACATTATGGGATTATTCAAAAAAACTGAAATGGTTTCATCTGTCCCAGCTGAAAATAAATCTGTCTTAAAT 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 GAACATCAGGAGACATCTAAACAGTGTGAGCAAAAAATTGCCATAGAGAATGAATGGAAACCAGCTGATATATT 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 CAGTACTCTGGGGGAAAGGGAATGTGATAGAAGTTCGTTGGAAGCAAAAAAAGCCCAGTGGAGGAAAGAGCTAG 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 ATGAACAGGTTGCTTTAAAGAAGAAAGAAAAAGAAGTTTCTGAAAAATGGAATGATCCTTGGAAAAAATCTGAA 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 AGTGATAAAATAATATGGGAAAAACATCAAATT----CTTGAC-CAATCTAG-GGAAACAGTACTGCTGGAGCA 956
|||||..|..|| |||.|| ||.|.| .|.|.||| |||||||||||||||||||||
Sbjct 1 --------------ATGGGGCATTCA-CAACTTAGAGCTAGTCAGACTTTAGAGGAAACAGTACTGCTGGAGCA 59
Query 957 CCCTTTCAGTGCTGTGAAACAAGAACTGCAGAGAAAATGGATTGAAGAGTTGAATAAGCAAATAGAAGATGACC 1030
||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CCCTTTCAGTGCTGTGAAACAAGAACTGCAAAGAAAATGGATTGAAGAGTTGAATAAGCAAATAGAAGATGACC 133
Query 1031 GTCAAAGAAAAATAGAGGAAAAAATTATATATTCAAAGGGTGAGGAACATGACAGATGGGCAATGCACTTTGAT 1104
||||||||||||||||||||||||||||||||||||
Sbjct 134 GTCAAAGAAAAATAGAGGAAAAAATTATATATTCAA-------------------------------------- 169
Query 1105 TCATTAAAGAGTTATCCTGGTTCTCAATCTCAGCTGTTCTCTCGGTCAACACACAAACAACCTGAGTACTTCTG 1178
Sbjct 170 -------------------------------------------------------------------------- 169
Query 1179 TGTCTCTCCTGACACTCAGGAGCTGGCTGATGTCAGCAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAAC 1252
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 -----------------AGGAGCTGGCTGATGTCAGCAGTGTTTGTACACCTACAACCGGAAGCCAGGTTGAAC 226
Query 1253 CTTCAGAGGAGGAGCATATAGCAAAACCTATTAAGGATGTGGTTATGGCAAACAGTAAGAAAACAAACTTTCTC 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 CTTCAGAGGAGGAGCATATAGCAAAACCTATTAAGGATGTGGTTATGGCAAACAGTAAGAAAACAAACTTTCTC 300
Query 1327 CGTTCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAAAACAATTAGAGCA 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGTTCTATGACTGCTCTCTTGGACCCAGCTCAGATTGAGGAACGAGACAGACGACGACAAAAACAATTAGAGCA 374
Query 1401 TCAGAAAGCCATCACTGCCCAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGGAGGAAGAGCAAAGAAAGAAGG 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 TCAGAAAGCCATCACTGCCCAGGTAGAAGAGAAGCGCAGGAAGAAACAACTGGAGGAAGAGCAAAGAAAGAAGG 448
Query 1475 AAGAACAAGAAGAGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGAAGACATACTT 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 AAGAACAAGAAGAGGAGCTTCGCTTAGCACAGGAACGTGAAGAGATGCAGAAACAGTATGAAGAAGACATACTT 522
Query 1549 AAGCAAAAACAAAAGGAAGAAATCATGACTCTCAAGACAAATGAGCTATTCCAGACAATGCAGCGAGCACAGGA 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 AAGCAAAAACAAAAGGAAGAAATCATGACTCTCAAGACAAATGAGCTATTCCAGACAATGCAGCGAGCACAGGA 596
Query 1623 ACTGGCACAGAGACTAAAACAAGAACAAAGAATCCGAGAATTGGCGCAAAAGGGACATGACACTTCTAGACTGA 1696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ACTGGCACAGAGACTAAAACAAGAACAAAGAATCCGAGAATTGGCGCAAAAGGGACATGACACTTCTAGACTGA 670
Query 1697 TTAAAAATCTTGGTGTTGATACAATACAAATGGAATATAATGCATCTAACATTTCAAATTCAAGACATGATTCT 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TTAAAAATCTTGGTGTTGATACAATACAAATGGAATATAATGCATCTAACATTTCAAATTCAAGACATGATTCT 744
Query 1771 GATGAAATCAGTGGTAAAATGAATACATATATGAATTCTACGACTTCTTCTAAGAAGGATACTGGTGTGCAAAC 1844
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 745 GATGAAATCAGTGGTAAAATGAATACATATATGAATTCTACGA---CTTCTAAGAAGGATACTGGTGTGCAAAC 815
Query 1845 AGATGACTTAAATATAGGAATATTCACCAATGCAGAATCACATTGTGGATCATTAATGGAGAGGGACATCACAA 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 AGATGACTTAAATATAGGAATATTCACCAATGCAGAATCACATTGTGGATCATTAATGGAGAGGGACATCACAA 889
Query 1919 ATTGTTCATCTCCTGAGATTTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAAAACAAGCAAGAACTAACT 1992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 ATTGTTCATCTCCTGAGATTTCGGCAGAACTTATTGGACAGTTTAGCACCAAGAAAAACAAGCAAGAACTAACT 963
Query 1993 CAGGATAAAGGAGCCAGCTTAGAAAAAGAAAACAATCGGTGTAATGACCAGTGTAATCAGTTCACAAGAATAGA 2066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 CAGGATAAAGGAGCCAGCTTAGAAAAAGAAAACAATCGGTGTAATGACCAGTGTAATCAGTTCACAAGAATAGA 1037
Query 2067 GAAACAAACAAAACACATGAAGAAATATCCTAAAAGGCCTGATTGGAATATAAATAAGCCACCTAAAAGGTATA 2140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 GAAACAAACAAAACACATGAAGAAATATCCTAAAAGGCCTGATTGGAATATAAATAAGCCACCTAAAAGGTATA 1111
Query 2141 TTCCAGCATCAGAAAAGTACCCTAAACAGCTTCAAAAGCAGAGAGAAGAAAAAAAAGTAAGGAGGCAGATGGAA 2214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 TTCCAGCATCAGAAAAGTACCCTAAACAGCTTCAAAAGCAGAGAGAAGAAAAAAAAGTAAGGAGGCAGATGGAA 1185
Query 2215 TTGCTTCATTTGGTAGAAAAAAATAATCCTGGGCACCTCTCTCAAAACAGAGGCATTTCACCAGAAATTTTTCA 2288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TTGCTTCATTTGGTAGAAAAAAATAATCCTGGGCACCTCTCTCAAAACAGAGGCATTTCACCAGAAATTTTTCA 1259
Query 2289 TTCATCTCATCAAGAAACGGAGTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGAAGAAGAGCCTCTGAATATTC 2362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TTCATCTCATCAAGAAACGGAGTCAAAGTTGAGGTGGCATCTAGTCAAAAAGGAAGAAGAGCCTCTGAATATTC 1333
Query 2363 ATTCATTCAGCAAGGAAAGGTCTCCATCATCACCAGTTCCAGTAGTGAAAAACAGAACCCAACAAACTCAAAAT 2436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 ATTCATTCAGCAAGGAAAGGTCTCCATCATCACCAGTTCCAGTAGTGAAAAACAGAACCCAACAAACTCAAAAT 1407
Query 2437 ACATTACATTTACCACTAAAAAACAGTAGCTATGAGAGAGAGAATTTGATCTCAGGAAGTAATCAAACAGAATT 2510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 ACATTACATTTACCACTAAAAAACAGTAGCTATGAGAGAGAGAATTTGATCTCAGGAAGTAATCAAACAGAATT 1481
Query 2511 ATCATCTGGGATTTCTGAATCATCCCATTTTATTCCGTATGTTCGAACAAATGAGATCTATTACCTTGATCCCG 2584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 ATCATCTGGGATTTCTGAATCATCCCATTTTATTCCGTATGTTCGAACAAATGAGATCTATTACCTTGATCCCG 1555
Query 2585 ATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAGACTGTGGCCAAAAACGACAG 2658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 ATGCACCATTGTCTGGGCCTTCAACCCAGGACCCTCAGTACCAAAATTCACAAGACTGTGGCCAAAAACGACAG 1629
Query 2659 CTATTTGATTCTGACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGACAGCAAGC 2732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1630 CTATTTGATTCTGACTGTGTCAGGGATCCACTTCTTAATCCTAACATGGTGAAAAATAGGGATCGACAGCAAGC 1703
Query 2733 AATCCTTAAGGGACTTTCAGAACTGAGACAGGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAGTAGTCTCCTGC 2806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 AATCCTTAAGGGACTTTCAGAACTGAGACAGGGCCTTCTCCAGAAGCAAAAGGAGTTGGAAAGTAGTCTCCTGC 1777
Query 2807 CTTTAGCTGAAAATCAAGAAGAGAGTTTTGGTTCTTCATTT 2847
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1778 CTTTAGCTGAAAATCAAGAAGAGAGTTTTGGTTCTTCATTT 1818
