Construct: ORF ccsbBroadEn_13547

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016999.1_s300c1, BRDN0000394444
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCDC66 (285331)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 285331 CCDC66 coiled-coil domain containi... NM_001141947.3 99.7% 99.7% (many diffs)
2 human 285331 CCDC66 coiled-coil domain containi... NM_001353147.1 99.1% 99.1% (many diffs)
3 human 285331 CCDC66 coiled-coil domain containi... NM_001353148.1 99.1% 99.1% (many diffs)
4 human 285331 CCDC66 coiled-coil domain containi... NM_001353149.1 99% 99% (many diffs)
5 human 285331 CCDC66 coiled-coil domain containi... XM_005265082.4 98.4% 98.4% (many diffs)
6 human 285331 CCDC66 coiled-coil domain containi... NM_001353150.1 97.3% 97.3% (many diffs)
7 human 285331 CCDC66 coiled-coil domain containi... NM_001353151.1 96.2% 96.2% (many diffs)
8 human 285331 CCDC66 coiled-coil domain containi... NM_001012506.5 96.2% 96.2% (many diffs)
9 human 285331 CCDC66 coiled-coil domain containi... NM_001353152.1 96.2% 96.2% (many diffs)
10 human 285331 CCDC66 coiled-coil domain containi... NM_001353153.1 96.2% 96.2% (many diffs)
11 human 285331 CCDC66 coiled-coil domain containi... XM_011533614.2 95.6% 95.6% (many diffs)
12 human 285331 CCDC66 coiled-coil domain containi... XM_011533615.2 95.6% 95.6% (many diffs)
13 human 285331 CCDC66 coiled-coil domain containi... XM_017006230.2 95.6% 95.6% (many diffs)
14 human 285331 CCDC66 coiled-coil domain containi... XM_011533616.3 95.6% 95.6% (many diffs)
15 human 285331 CCDC66 coiled-coil domain containi... XM_011533617.2 95.6% 95.6% (many diffs)
16 human 285331 CCDC66 coiled-coil domain containi... XM_024453462.1 95.6% 95.6% (many diffs)
17 human 285331 CCDC66 coiled-coil domain containi... NM_001353154.1 95.2% 95.3% (many diffs)
18 human 285331 CCDC66 coiled-coil domain containi... XM_024453463.1 94.8% 94.8% (many diffs)
19 human 285331 CCDC66 coiled-coil domain containi... XM_005265083.4 94.6% 94.7% (many diffs)
20 human 285331 CCDC66 coiled-coil domain containi... NM_001353155.1 94.5% 94.6% (many diffs)
21 human 285331 CCDC66 coiled-coil domain containi... NR_148370.1 90% (many diffs)
22 human 285331 CCDC66 coiled-coil domain containi... NR_024460.2 89.1% (many diffs)
23 human 285331 CCDC66 coiled-coil domain containi... NR_148369.1 88.9% (many diffs)
24 human 285331 CCDC66 coiled-coil domain containi... NR_148368.1 88.8% (many diffs)
25 human 285331 CCDC66 coiled-coil domain containi... NR_148377.1 88.2% (many diffs)
26 human 285331 CCDC66 coiled-coil domain containi... NR_148366.1 86.6% (many diffs)
27 human 285331 CCDC66 coiled-coil domain containi... NR_148367.1 86.5% (many diffs)
28 human 285331 CCDC66 coiled-coil domain containi... XR_001740115.2 86.5% (many diffs)
29 human 285331 CCDC66 coiled-coil domain containi... NR_148378.1 85.7% (many diffs)
30 human 285331 CCDC66 coiled-coil domain containi... NR_148375.1 85.6% (many diffs)
31 human 285331 CCDC66 coiled-coil domain containi... NR_148376.1 85.2% (many diffs)
32 human 285331 CCDC66 coiled-coil domain containi... NR_148371.1 84.5% (many diffs)
33 human 285331 CCDC66 coiled-coil domain containi... NR_148372.1 84.1% (many diffs)
34 human 285331 CCDC66 coiled-coil domain containi... NR_148374.1 83.7% (many diffs)
35 human 285331 CCDC66 coiled-coil domain containi... NR_148373.1 83.6% (many diffs)
36 human 285331 CCDC66 coiled-coil domain containi... XM_011533619.2 78.2% 78.2% (many diffs)
37 human 285331 CCDC66 coiled-coil domain containi... XM_024453464.1 78.2% 78.2% (many diffs)
38 human 285331 CCDC66 coiled-coil domain containi... XR_001740111.2 74.3% (many diffs)
39 human 285331 CCDC66 coiled-coil domain containi... NM_001353156.1 67.6% 67% (many diffs)
40 human 285331 CCDC66 coiled-coil domain containi... XM_024453468.1 67.6% 67% (many diffs)
41 human 285331 CCDC66 coiled-coil domain containi... XM_017006236.1 67.1% 66.5% (many diffs)
42 human 285331 CCDC66 coiled-coil domain containi... XM_017006237.2 67.1% 66.5% (many diffs)
43 human 285331 CCDC66 coiled-coil domain containi... XM_017006238.1 67.1% 66.5% (many diffs)
44 human 285331 CCDC66 coiled-coil domain containi... XM_017006239.1 67.1% 66.5% (many diffs)
45 human 285331 CCDC66 coiled-coil domain containi... XM_024453465.1 67.1% 66.5% (many diffs)
46 human 285331 CCDC66 coiled-coil domain containi... XM_024453466.1 67.1% 66.5% (many diffs)
47 human 285331 CCDC66 coiled-coil domain containi... XM_024453467.1 67.1% 66.5% (many diffs)
48 human 285331 CCDC66 coiled-coil domain containi... NM_001353158.1 63.1% 62.6% (many diffs)
49 human 285331 CCDC66 coiled-coil domain containi... XM_017006242.2 63.1% 62.6% (many diffs)
50 human 285331 CCDC66 coiled-coil domain containi... NM_001353160.1 61.5% 61.4% 0_1ins1092;56A>G;721_722insCTT
51 human 285331 CCDC66 coiled-coil domain containi... XM_017006243.2 61.5% 61.4% 0_1ins1092;56A>G;721_722insCTT
52 human 285331 CCDC66 coiled-coil domain containi... XM_024453469.1 61.1% 61% (many diffs)
53 human 285331 CCDC66 coiled-coil domain containi... XM_024453470.1 61.1% 61% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2916
ORF length:
2847
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAACTTGGGA GATGGTTTAA AGCTTGAAAC TGAATTACTG GATGGAAAAA
121CCAAGCTAAT ATTGTCTCCA TATGAACATA AATCAAAAAT TTCTGTGAAG ATGGGAAATA
181AGGCCAAGAT TGCAAAATGT CCTTTAAGAA CAAAAACTGG GCACATTCTA AAATCAACAC
241AAGATACTTG TATTGGGAGT GAAAAACTTT TGCAAAAGAA GCCAGTTGGT TCAGAAACAT
301CACAGGCAAA AGGTGAAAAA AATGGAATGA CTTTTTCATC CACTAAGGAT TTATGTAAAC
361AATGTATAGA TAAAGACTGT CTTCATATCC AGAAAGAGAT TTCACCTGCA ACTCCTAATA
421TGCAGAAGAC TAGAAACACC GTAAATACAT CTCTAGTAGG TAAACAGAAG CCTCACAAAA
481AACACATCAC AGCTGAAAAC ATGAAGAGCA GTTTGGTGTG TCTAACACAA GACCAACTAC
541AACAGATTTT GATGACTGTA AACCAAGGAA ATAGATCTCT TTCCCTGACT GAGAATGGAA
601AGGAGGCAAA AAGTCAATAT AGTCTATATT TAAACAGTAT TTCTAATCAG CCAAAGGATG
661AGAACATTAT GGGATTATTC AAAAAAACTG AAATGGTTTC ATCTGTCCCA GCTGAAAATA
721AATCTGTCTT AAATGAACAT CAGGAGACAT CTAAACAGTG TGAGCAAAAA ATTGCCATAG
781AGAATGAATG GAAACCAGCT GATATATTCA GTACTCTGGG GGAAAGGGAA TGTGATAGAA
841GTTCGTTGGA AGCAAAAAAA GCCCAGTGGA GGAAAGAGCT AGATGAACAG GTTGCTTTAA
901AGAAGAAAGA AAAAGAAGTT TCTGAAAAAT GGAATGATCC TTGGAAAAAA TCTGAAAGTG
961ATAAAATAAT ATGGGAAAAA CATCAAATTC TTGACCAATC TAGGGAAACA GTACTGCTGG
1021AGCACCCTTT CAGTGCTGTG AAACAAGAAC TGCAGAGAAA ATGGATTGAA GAGTTGAATA
1081AGCAAATAGA AGATGACCGT CAAAGAAAAA TAGAGGAAAA AATTATATAT TCAAAGGGTG
1141AGGAACATGA CAGATGGGCA ATGCACTTTG ATTCATTAAA GAGTTATCCT GGTTCTCAAT
1201CTCAGCTGTT CTCTCGGTCA ACACACAAAC AACCTGAGTA CTTCTGTGTC TCTCCTGACA
1261CTCAGGAGCT GGCTGATGTC AGCAGTGTTT GTACACCTAC AACCGGAAGC CAGGTTGAAC
1321CTTCAGAGGA GGAGCATATA GCAAAACCTA TTAAGGATGT GGTTATGGCA AACAGTAAGA
1381AAACAAACTT TCTCCGTTCT ATGACTGCTC TCTTGGACCC AGCTCAGATT GAGGAACGAG
1441ACAGACGACG ACAAAAACAA TTAGAGCATC AGAAAGCCAT CACTGCCCAG GTAGAAGAGA
1501AGCGCAGGAA GAAACAACTG GAGGAAGAGC AAAGAAAGAA GGAAGAACAA GAAGAGGAGC
1561TTCGCTTAGC ACAGGAACGT GAAGAGATGC AGAAACAGTA TGAAGAAGAC ATACTTAAGC
1621AAAAACAAAA GGAAGAAATC ATGACTCTCA AGACAAATGA GCTATTCCAG ACAATGCAGC
1681GAGCACAGGA ACTGGCACAG AGACTAAAAC AAGAACAAAG AATCCGAGAA TTGGCGCAAA
1741AGGGACATGA CACTTCTAGA CTGATTAAAA ATCTTGGTGT TGATACAATA CAAATGGAAT
1801ATAATGCATC TAACATTTCA AATTCAAGAC ATGATTCTGA TGAAATCAGT GGTAAAATGA
1861ATACATATAT GAATTCTACG ACTTCTTCTA AGAAGGATAC TGGTGTGCAA ACAGATGACT
1921TAAATATAGG AATATTCACC AATGCAGAAT CACATTGTGG ATCATTAATG GAGAGGGACA
1981TCACAAATTG TTCATCTCCT GAGATTTCGG CAGAACTTAT TGGACAGTTT AGCACCAAGA
2041AAAACAAGCA AGAACTAACT CAGGATAAAG GAGCCAGCTT AGAAAAAGAA AACAATCGGT
2101GTAATGACCA GTGTAATCAG TTCACAAGAA TAGAGAAACA AACAAAACAC ATGAAGAAAT
2161ATCCTAAAAG GCCTGATTGG AATATAAATA AGCCACCTAA AAGGTATATT CCAGCATCAG
2221AAAAGTACCC TAAACAGCTT CAAAAGCAGA GAGAAGAAAA AAAAGTAAGG AGGCAGATGG
2281AATTGCTTCA TTTGGTAGAA AAAAATAATC CTGGGCACCT CTCTCAAAAC AGAGGCATTT
2341CACCAGAAAT TTTTCATTCA TCTCATCAAG AAACGGAGTC AAAGTTGAGG TGGCATCTAG
2401TCAAAAAGGA AGAAGAGCCT CTGAATATTC ATTCATTCAG CAAGGAAAGG TCTCCATCAT
2461CACCAGTTCC AGTAGTGAAA AACAGAACCC AACAAACTCA AAATACATTA CATTTACCAC
2521TAAAAAACAG TAGCTATGAG AGAGAGAATT TGATCTCAGG AAGTAATCAA ACAGAATTAT
2581CATCTGGGAT TTCTGAATCA TCCCATTTTA TTCCGTATGT TCGAACAAAT GAGATCTATT
2641ACCTTGATCC CGATGCACCA TTGTCTGGGC CTTCAACCCA GGACCCTCAG TACCAAAATT
2701CACAAGACTG TGGCCAAAAA CGACAGCTAT TTGATTCTGA CTGTGTCAGG GATCCACTTC
2761TTAATCCTAA CATGGTGAAA AATAGGGATC GACAGCAAGC AATCCTTAAG GGACTTTCAG
2821AACTGAGACA GGGCCTTCTC CAGAAGCAAA AGGAGTTGGA AAGTAGTCTC CTGCCTTTAG
2881CTGAAAATCA AGAAGAGAGT TTTGGTTCTT CATTTTTGCC AACTTTCTTG TACAAAGTtg
2941gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.