Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13606
- Subject:
- XM_006529570.1
- Aligned Length:
- 3426
- Identities:
- 1825
- Gaps:
- 1410
Alignment
Query 1 ATGGTTGATTTGGAGAGCGAAGTGCCCCCTCTGCCTCCCAGGTACAGGTTTCGAGATTTGCTGCTAGGGGACCA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 AGGATGGCAAAACGACGACAGGGTACAAGTTGAATTCTATATGAATGAAAATACATTTAAAGAAAGACTAAAAT 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TATTTTTCATAAAAAACCAGAGATCAAGTCTAAGGATACGCCTGTTCAATTTTTCTCTCAAATTACTAAGCTGC 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 TTATTATACATAATCCGAGTACTACTAGAAAACCCTTCACAAGGAAATGAATGGTCTCATATCTTTTGGGTGAA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 CAGAAGTCTACCTTTGTGGGGCTTACAGGTTTCAGTGGCATTGATAAGTCTGTTTGAAACAATATTACTTGGTT 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 ATCTTAGTTATAAGGGAAACATCTGGGAACAGATTTTACGAATACCCTTCATCTTGGAAATAATTAATGCAGTT 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 CCCTTCATTATCTCAATATTCTGGCCTTCCTTAAGGAATCTATTTGTCCCAGTCTTTCTGAACTGTTGGCTTGC 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 CAAACATGCCTTGGAAAATATGATTAATGATCTACACAGAGCCATTCAGCGTACACAGTCTGCAATGTTTAATC 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 AAGTTTTGATTTTAATATCTACATTACTATGCCTTATCTTCACCTGCATTTGTGGGATCCAACATCTGGAACGA 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 ATAGGAAAGAAGCTGAATCTCTTTGACTCCCTTTATTTCTGCATTGTGACGTTTTCTACTGTGGGCTTCGGGGA 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 TGTCACTCCTGAAACATGGTCCTCCAAGCTTTTTGTAGTTGCTATGATTTGTGTTGCTCTTGTGGTTCTACCCA 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 TACAGTTTGAACAGCTGGCTTATTTGTGGATGGAGAGACAAAAGTCAGGAGGAAACTATAGTCGACATAGAGCT 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 CAAACTGAAAAGCATGTCGTCCTGTGTGTCAGCTCACTGAAGATTGATTTACTTATGGATTTTTTAAATGAATT 962
Sbjct 1 -------------------------------------------------------------------------- 0
Query 963 CTATGCTCATCCTAGGCTCCAGGATTATTATGTGGTGATTTTGTGTCCTACTGAAATGGATGTACAGGTTCGAA 1036
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1037 GGGTACTGCAGATTCCAATGTGGTCCCAACGAGTTATCTACCTTCAAGGTTCAGCCCTTAAAGATCAAGACCTA 1110
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1111 TTGAGAGCAAAGATGGATGACGCTGAGGCCTGTTTTATTCTCAGTAGCCGTTGTGAAGTGGATAGGACATCATC 1184
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1185 TGATCACCAAACAATTTTGAGAGCATGGGCTGTGAAAGATTTTGCTCCAAATTGTCCTTTGTATGTCCAGATAT 1258
|||||||||||||||||||||.||||||||||||.|||||||.|||||||
Sbjct 1 ------------------------ATGGGCTGTGAAAGATTTTGCCCCAAATTGTCCTCTGTATGTTCAGATAT 50
Query 1259 TAAAGCCTGAAAATAAATTTCACATCAAATTTGCTGATCATGTTGTTTGTGAAGAAGAGTTTAAATACGCCATG 1332
||||.||.|||||.|||||.||||||||||||||.|
Sbjct 51 TAAAACCAGAAAACAAATTCCACATCAAATTTGCAG-------------------------------------- 86
Query 1333 TTAGCTTTAAACTGTATATGCCCAGCAACATCTACACTTATTACACTACTGGTTCATACCTCTAGAGGGCAAGA 1406
|||
Sbjct 87 -----------------------------------------------------------------------AGA 89
Query 1407 AGGCCAGCAATCGCCAGAACAATGGCAGAAGATGTACGGTAGATGCTCCGGGAATGAAGTCTACCACATTGTTT 1480
|||.|||||.||.||.|||||.||||||||||..|||||.||.|||||.||.||.||||||||.|||||.||||
Sbjct 90 AGGGCAGCAGTCACCTGAACAGTGGCAGAAGACTTACGGGAGGTGCTCAGGAAACGAAGTCTATCACATCGTTT 163
Query 1481 TGGAAGAAAGTACATTTTTTGCTGAATATGAAGGAAAGAGTTTTACATATGCCTCTTTCCATGCACACAAAAAG 1554
||||||||||||||||||||||||||||||||||.|||||||||||.|||||.|||||.|||||.|||||||||
Sbjct 164 TGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGAAGAGTTTTACCTATGCTTCTTTTCATGCCCACAAAAAG 237
Query 1555 TTTGGCGTCTGCTTGATTGGTGTTAGGAGGGAGGATAATAAAAACATTTTGCTGAATCCAGGTCCTCGATACAT 1628
|||||.|||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTTGGTGTCTGCTTGGTTGGTGTTAGGAGGGAGGATAATAAAAACATTTTGCTGAATCCAGGTCCTCGATACAT 311
Query 1629 TATGAATTCTACAGACATATGCTTTTATATTAATATTACCAAAGAAGAGAATTCAGCATTTAAAAACCAAGACC 1702
|||||||.||.||||||||||.||||||||||||||||||||||||||.||||||||||||||.||.|||||||
Sbjct 312 TATGAATGCTTCAGACATATGTTTTTATATTAATATTACCAAAGAAGAAAATTCAGCATTTAAGAATCAAGACC 385
Query 1703 AGCAGAGAAAAAGCAATGTGTCCAGGTCGTTTTATCATGGACCTTCCAGATTACCTGTACATAGCATAATTGCC 1776
|.|||||||||||.||||||||.|||||.|||||||||||.|||||||||||.|||||.||.|||||.||||||
Sbjct 386 AACAGAGAAAAAGTAATGTGTCAAGGTCATTTTATCATGGGCCTTCCAGATTGCCTGTCCACAGCATCATTGCC 459
Query 1777 AGCATGGGTACTGTGGCTATAGACTTGCAAGATACAAGCTGTAGATCAGCAAGTGGCCCTACCCTGTCTCTTCC 1850
||||||||||||||||||||||||||||||||.||||||||.|||.||.||||||||||.||||||.|||||||
Sbjct 460 AGCATGGGTACTGTGGCTATAGACTTGCAAGACACAAGCTGCAGAGCAACAAGTGGCCCCACCCTGGCTCTTCC 533
Query 1851 TACAGAGGGAAGCAAAGAAATAAGAAGACCTAGCATTGCTCCTGTTTTAGAGGTTGCAGATACATCATCGATTC 1924
|.||||||||.||||||||.||||||||||||||||||||||||||||||||||.||||||||||||||.||||
Sbjct 534 TTCAGAGGGAGGCAAAGAATTAAGAAGACCTAGCATTGCTCCTGTTTTAGAGGTGGCAGATACATCATCAATTC 607
Query 1925 AAACATGTGATCTTCTAAGTGACCAATCAGAAGATGAAACTACACCAGATGAAGAAATGTCTTCAAACTTAGAG 1998
|||||||.|||||.|||||||||||.||.||||||||||||||||||||||||||||..||||||||.||||||
Sbjct 608 AAACATGCGATCTCCTAAGTGACCAGTCCGAAGATGAAACTACACCAGATGAAGAAACATCTTCAAATTTAGAG 681
Query 1999 TATGCTAAAGGTTACCCACCTTATTCTCCATATATAGGAAGTTCACCCACTTTTTGTCATCTCCTTCATGAAAA 2072
|||||.|||||.||||||||||||||.|||||.||||||||||||||.|||||||||||.||.|||||.|||||
Sbjct 682 TATGCCAAAGGCTACCCACCTTATTCCCCATACATAGGAAGTTCACCTACTTTTTGTCACCTACTTCAAGAAAA 755
Query 2073 AGTACCATTTTGCTGCTTAAGATTAGACAAGAGTTGCCAACATAACTACTATGAGGATGCAAAAGCCTATGGAT 2146
|||.|||||||||||||||||||||||||||||||||||.|||||||||||||||||.||||||||||||||||
Sbjct 756 AGTGCCATTTTGCTGCTTAAGATTAGACAAGAGTTGCCAGCATAACTACTATGAGGACGCAAAAGCCTATGGAT 829
Query 2147 TCAAAAATAAACTAATTATAGTTGCAGCTGAAACAGCTGGAAATGGATTATATAACTTTATTGTTCCTCTCAGG 2220
|||||||||||||||||||||||||||||||||||||||||||||||.|||||||.||||||||.|||||||||
Sbjct 830 TCAAAAATAAACTAATTATAGTTGCAGCTGAAACAGCTGGAAATGGACTATATAATTTTATTGTACCTCTCAGG 903
Query 2221 GCATATTATAGACCAAAGAAAGAACTTAATCCCATAGTACTGCTATTGGATAACCC------------------ 2276
||||||||||||||||||||||||.|.|||||||||||.|||||||||||||||||
Sbjct 904 GCATATTATAGACCAAAGAAAGAATTAAATCCCATAGTTCTGCTATTGGATAACCCGCCAGATATGCATTTTCT 977
Query 2277 ------------------------------------------------------CCTAGATGACTTACTCAGGT 2296
|||||||||.||.|||||||
Sbjct 978 GGATGCAATCTGTTGGTTTCCAATGGTTTACTACATGGTGGGCTCTATTGACAACCTAGATGATTTGCTCAGGT 1051
Query 2297 GTGGAGTGACTTTTGCTGCTAATATGGTGGTTGTGGATAAAGAGAGCACCATGAGTGCCGAGGAAGACTACATG 2370
||||||||||.||||||||.||.||||||||.|||||.|||||.||||||||||||||.|||||||||||||||
Sbjct 1052 GTGGAGTGACCTTTGCTGCCAACATGGTGGTGGTGGACAAAGAAAGCACCATGAGTGCAGAGGAAGACTACATG 1125
Query 2371 GCAGATGCCAAAACCATTGTGAACGTGCAGACACTCTTCAGGTTGTTTTCCAGTCTCAGTATTATCACAGAGCT 2444
|||||||||||.||.||||||||.||||||||.||.||||||||||||||.|||||||||||.|||||.|||||
Sbjct 1126 GCAGATGCCAAGACGATTGTGAATGTGCAGACTCTGTTCAGGTTGTTTTCAAGTCTCAGTATCATCACTGAGCT 1199
Query 2445 AACTCACCCCGCCAACATGAGATTCATGCAATTCAGAGCCAAAGACTGTTACTCTCTTGCTCTTTCAAAACTGG 2518
.||.||.||.||.||.||||||||||||||||||||||||||.||.|||||||||||.||.|||||||||||||
Sbjct 1200 TACGCATCCAGCAAATATGAGATTCATGCAATTCAGAGCCAAGGATTGTTACTCTCTCGCGCTTTCAAAACTGG 1273
Query 2519 AAAAGAAAGAACGGGAGAGAGGCTCTAACTTGGCCTTTATGTTTCGACTGCCTTTTGCTGCTGGGAGGGTGTTT 2592
|||||||||||.|.||..||||.||||||||||||||||||||||||||||||||||||||.||.||.|||||.
Sbjct 1274 AAAAGAAAGAAAGAGAACGAGGTTCTAACTTGGCCTTTATGTTTCGACTGCCTTTTGCTGCGGGAAGAGTGTTC 1347
Query 2593 AGCATCAGTATGTTGGACACTCTGCTGTATCAGTCATTTGTGAAGGATTATATGATTTCTATCACGAGACTTCT 2666
||||||||||||||.|||||.||.||.|||||||||||||||||.||||||||||||||||||||.||||||||
Sbjct 1348 AGCATCAGTATGTTAGACACCCTTCTTTATCAGTCATTTGTGAAAGATTATATGATTTCTATCACCAGACTTCT 1421
Query 2667 GTTGGGACTGGACACTACACCAGGATCTGGGTTTCTTTGTTCTATGAAAATCACTGCAGATGACTTATGGATCA 2740
.||||||||||||||.|.|||||||||.||||||||||||||||||||||||||||.|||||||||.|||||||
Sbjct 1422 TTTGGGACTGGACACCATACCAGGATCGGGGTTTCTTTGTTCTATGAAAATCACTGAAGATGACTTGTGGATCA 1495
Query 2741 GAACTTATGCCAGACTTTATCAGAAGTTGTGTTCTTCTACTGGAGATGTTCCCATTGGAATCTACAGGACTGAG 2814
||||.|||||||||||.||||||||||||||||||||||||||||||||||||||.||.||||||||.||.||.
Sbjct 1496 GAACGTATGCCAGACTCTATCAGAAGTTGTGTTCTTCTACTGGAGATGTTCCCATCGGGATCTACAGAACAGAA 1569
Query 2815 TCTCAGAAACTTACTACATCTGAG---------------------TCTCAAATATCTATCAGTGTAGAAGAGTG 2867
|||||||||||.||.||||||||| |||||||||||.||.|||||.||||||||
Sbjct 1570 TCTCAGAAACTAACGACATCTGAGTCTCGAGAAATAGGATCTCAATCTCAAATATCCATTAGTGTGGAAGAGTG 1643
Query 2868 GGAAGACACCAAAGACTCCAAAGAACAAGGGCACCACCGCAGCAACCACCGCAACTCAACATCCAGTGACCAGT 2941
|||||||||||||||...||||||.|.||||||||||||||||...||||||||||||||.||.||||||||||
Sbjct 1644 GGAAGACACCAAAGATGTCAAAGACCCAGGGCACCACCGCAGCCTTCACCGCAACTCAACGTCTAGTGACCAGT 1717
Query 2942 CGGACCATCCCTTGCTGCGGAGAAAAAGCATGCAGTGGGCCCGAAGACTGAGCAGAAAAGGCCCAAAACACTCT 3015
||||||||||||||||||||||.||.||||||||||||||||||||.||||||||||||||.||.||.||||||
Sbjct 1718 CGGACCATCCCTTGCTGCGGAGGAAGAGCATGCAGTGGGCCCGAAGGCTGAGCAGAAAAGGGCCGAAGCACTCT 1791
Query 3016 GGTAAAACAGCTGAAAAAATAACCCAGCAGCGACTGAACCTCTACAGGAGGTCAGAAAGACAAGAGCTTGCTGA 3089
||||||||.||.|||||||||||.||.||||||||||||||||||.||||.||.||||||||.|||||||||||
Sbjct 1792 GGTAAAACTGCAGAAAAAATAACTCAACAGCGACTGAACCTCTACCGGAGATCCGAAAGACAGGAGCTTGCTGA 1865
Query 3090 ACTTGTGAAAAATAGAATGAAACACTTGGGTCTTTCTACAGTGGGATATGATGAAATGAATGATCATCAAAGTA 3163
||||||||||||.||||||||||||.||||.||.||.||.|||||.||.||||||||||||||||||||.||.|
Sbjct 1866 ACTTGTGAAAAACAGAATGAAACACCTGGGCCTCTCGACGGTGGGCTACGATGAAATGAATGATCATCAGAGCA 1939
Query 3164 CCCTCTCCTACATCCTGATTAACCCATCTCCAGATACCAGAATAGAGCTGAATGATGTTGTATACTTAATTCGA 3237
||||.|||||||||||||||||.||.||||||||.|||||..|.||||||||||||||||||||.||.||.|||
Sbjct 1940 CCCTGTCCTACATCCTGATTAATCCGTCTCCAGACACCAGGCTTGAGCTGAATGATGTTGTATATTTGATCCGA 2013
Query 3238 CCAGATCCACTGGCCTACCTTCCAAACAGTGAGCCCAGTCGAAGAAACAGCATCTGCAATGTCACTGGTCAAGA 3311
||||||||||||.|||||||||||||||||||.||||||.|.|.|||||||||||||||||.|.|||.||||||
Sbjct 2014 CCAGATCCACTGTCCTACCTTCCAAACAGTGAACCCAGTAGGAAAAACAGCATCTGCAATGCCGCTGTTCAAGA 2087
Query 3312 TTCTCGGGAGGAAACTCAACTC 3333
||||||||||||||||||||||
Sbjct 2088 TTCTCGGGAGGAAACTCAACTC 2109
