Construct: ORF ccsbBroadEn_13606

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009077.1_s300c1, BRDN0000457427
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KCNT2 (343450)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 343450 KCNT2 potassium sodium-activated ... NM_001287819.3 99.9% 100% 2937T>C;3333T>C
2 human 343450 KCNT2 potassium sodium-activated ... XM_006711295.3 99.3% 99.3% 2839_2859del;2958T>C;3354T>C
3 human 343450 KCNT2 potassium sodium-activated ... NM_198503.5 97.8% 97.8% 2277_2348del;3009T>C;3405T>C
4 human 343450 KCNT2 potassium sodium-activated ... XM_006711294.3 97.2% 97.2% (many diffs)
5 human 343450 KCNT2 potassium sodium-activated ... NM_001287820.3 94.8% 94.9% (many diffs)
6 human 343450 KCNT2 potassium sodium-activated ... XM_017001185.2 91.8% 90.5% (many diffs)
7 human 343450 KCNT2 potassium sodium-activated ... XM_017001179.2 77.4% 74.1% (many diffs)
8 human 343450 KCNT2 potassium sodium-activated ... XR_001737149.2 71.4% (many diffs)
9 human 343450 KCNT2 potassium sodium-activated ... XM_017001180.2 69.1% 68.1% (many diffs)
10 human 343450 KCNT2 potassium sodium-activated ... XM_011509483.3 68.2% 68.3% 2277_2277delAins1057
11 human 343450 KCNT2 potassium sodium-activated ... XR_921774.3 68% 1_251del;2528_2649del;2896_2897ins810
12 human 343450 KCNT2 potassium sodium-activated ... XR_001737151.2 64% (many diffs)
13 human 343450 KCNT2 potassium sodium-activated ... XM_017001181.1 62.9% 62.8% (many diffs)
14 human 343450 KCNT2 potassium sodium-activated ... XM_017001183.1 55.2% 55.3% (many diffs)
15 human 343450 KCNT2 potassium sodium-activated ... XM_024446697.1 55.2% 55.3% (many diffs)
16 human 343450 KCNT2 potassium sodium-activated ... NR_146058.2 54.9% (many diffs)
17 human 343450 KCNT2 potassium sodium-activated ... NR_146057.2 53.8% (many diffs)
18 mouse 240776 Kcnt2 potassium channel, subfamil... XM_006529566.3 90.3% 97.4% (many diffs)
19 mouse 240776 Kcnt2 potassium channel, subfamil... NM_001081027.2 88.3% 95.4% (many diffs)
20 mouse 240776 Kcnt2 potassium channel, subfamil... XM_006529565.3 87.8% 94.8% (many diffs)
21 mouse 240776 Kcnt2 potassium channel, subfamil... XM_011247996.2 87.8% 94.8% (many diffs)
22 mouse 240776 Kcnt2 potassium channel, subfamil... XM_017320509.1 87.3% 94.2% (many diffs)
23 mouse 240776 Kcnt2 potassium channel, subfamil... XM_017320508.1 87.2% 94.1% (many diffs)
24 mouse 240776 Kcnt2 potassium channel, subfamil... XM_006529562.3 85.9% 92.8% (many diffs)
25 mouse 240776 Kcnt2 potassium channel, subfamil... XM_017320507.1 85.9% 92.8% (many diffs)
26 mouse 240776 Kcnt2 potassium channel, subfamil... XM_011247998.2 85.8% 92.4% (many diffs)
27 mouse 240776 Kcnt2 potassium channel, subfamil... XM_017320506.1 85.4% 92.2% (many diffs)
28 mouse 240776 Kcnt2 potassium channel, subfamil... XM_006529572.3 84.9% 92.1% (many diffs)
29 mouse 240776 Kcnt2 potassium channel, subfamil... XM_017320510.1 82.9% 89.3% (many diffs)
30 mouse 240776 Kcnt2 potassium channel, subfamil... XM_011247997.1 82.2% 88.6% (many diffs)
31 mouse 240776 Kcnt2 potassium channel, subfamil... XM_006529567.1 81.2% 84.6% (many diffs)
32 mouse 240776 Kcnt2 potassium channel, subfamil... XR_001784492.1 62.7% (many diffs)
33 mouse 240776 Kcnt2 potassium channel, subfamil... XR_001784491.1 62.2% (many diffs)
34 mouse 240776 Kcnt2 potassium channel, subfamil... XM_011247999.2 60.2% 65% (many diffs)
35 mouse 240776 Kcnt2 potassium channel, subfamil... XM_006529570.1 53.2% 54.3% (many diffs)
36 mouse 240776 Kcnt2 potassium channel, subfamil... XM_017320512.1 52.7% 56% (many diffs)
37 mouse 240776 Kcnt2 potassium channel, subfamil... XR_001784494.1 35.6% (many diffs)
38 mouse 240776 Kcnt2 potassium channel, subfamil... XR_001784498.1 35.5% (many diffs)
39 mouse 240776 Kcnt2 potassium channel, subfamil... XR_001784487.1 33.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3402
ORF length:
3333
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGTTGATTTG GAGAGCGAAG TGCCCCCTCT GCCTCCCAGG TACAGGTTTC
121GAGATTTGCT GCTAGGGGAC CAAGGATGGC AAAACGACGA CAGGGTACAA GTTGAATTCT
181ATATGAATGA AAATACATTT AAAGAAAGAC TAAAATTATT TTTCATAAAA AACCAGAGAT
241CAAGTCTAAG GATACGCCTG TTCAATTTTT CTCTCAAATT ACTAAGCTGC TTATTATACA
301TAATCCGAGT ACTACTAGAA AACCCTTCAC AAGGAAATGA ATGGTCTCAT ATCTTTTGGG
361TGAACAGAAG TCTACCTTTG TGGGGCTTAC AGGTTTCAGT GGCATTGATA AGTCTGTTTG
421AAACAATATT ACTTGGTTAT CTTAGTTATA AGGGAAACAT CTGGGAACAG ATTTTACGAA
481TACCCTTCAT CTTGGAAATA ATTAATGCAG TTCCCTTCAT TATCTCAATA TTCTGGCCTT
541CCTTAAGGAA TCTATTTGTC CCAGTCTTTC TGAACTGTTG GCTTGCCAAA CATGCCTTGG
601AAAATATGAT TAATGATCTA CACAGAGCCA TTCAGCGTAC ACAGTCTGCA ATGTTTAATC
661AAGTTTTGAT TTTAATATCT ACATTACTAT GCCTTATCTT CACCTGCATT TGTGGGATCC
721AACATCTGGA ACGAATAGGA AAGAAGCTGA ATCTCTTTGA CTCCCTTTAT TTCTGCATTG
781TGACGTTTTC TACTGTGGGC TTCGGGGATG TCACTCCTGA AACATGGTCC TCCAAGCTTT
841TTGTAGTTGC TATGATTTGT GTTGCTCTTG TGGTTCTACC CATACAGTTT GAACAGCTGG
901CTTATTTGTG GATGGAGAGA CAAAAGTCAG GAGGAAACTA TAGTCGACAT AGAGCTCAAA
961CTGAAAAGCA TGTCGTCCTG TGTGTCAGCT CACTGAAGAT TGATTTACTT ATGGATTTTT
1021TAAATGAATT CTATGCTCAT CCTAGGCTCC AGGATTATTA TGTGGTGATT TTGTGTCCTA
1081CTGAAATGGA TGTACAGGTT CGAAGGGTAC TGCAGATTCC AATGTGGTCC CAACGAGTTA
1141TCTACCTTCA AGGTTCAGCC CTTAAAGATC AAGACCTATT GAGAGCAAAG ATGGATGACG
1201CTGAGGCCTG TTTTATTCTC AGTAGCCGTT GTGAAGTGGA TAGGACATCA TCTGATCACC
1261AAACAATTTT GAGAGCATGG GCTGTGAAAG ATTTTGCTCC AAATTGTCCT TTGTATGTCC
1321AGATATTAAA GCCTGAAAAT AAATTTCACA TCAAATTTGC TGATCATGTT GTTTGTGAAG
1381AAGAGTTTAA ATACGCCATG TTAGCTTTAA ACTGTATATG CCCAGCAACA TCTACACTTA
1441TTACACTACT GGTTCATACC TCTAGAGGGC AAGAAGGCCA GCAATCGCCA GAACAATGGC
1501AGAAGATGTA CGGTAGATGC TCCGGGAATG AAGTCTACCA CATTGTTTTG GAAGAAAGTA
1561CATTTTTTGC TGAATATGAA GGAAAGAGTT TTACATATGC CTCTTTCCAT GCACACAAAA
1621AGTTTGGCGT CTGCTTGATT GGTGTTAGGA GGGAGGATAA TAAAAACATT TTGCTGAATC
1681CAGGTCCTCG ATACATTATG AATTCTACAG ACATATGCTT TTATATTAAT ATTACCAAAG
1741AAGAGAATTC AGCATTTAAA AACCAAGACC AGCAGAGAAA AAGCAATGTG TCCAGGTCGT
1801TTTATCATGG ACCTTCCAGA TTACCTGTAC ATAGCATAAT TGCCAGCATG GGTACTGTGG
1861CTATAGACTT GCAAGATACA AGCTGTAGAT CAGCAAGTGG CCCTACCCTG TCTCTTCCTA
1921CAGAGGGAAG CAAAGAAATA AGAAGACCTA GCATTGCTCC TGTTTTAGAG GTTGCAGATA
1981CATCATCGAT TCAAACATGT GATCTTCTAA GTGACCAATC AGAAGATGAA ACTACACCAG
2041ATGAAGAAAT GTCTTCAAAC TTAGAGTATG CTAAAGGTTA CCCACCTTAT TCTCCATATA
2101TAGGAAGTTC ACCCACTTTT TGTCATCTCC TTCATGAAAA AGTACCATTT TGCTGCTTAA
2161GATTAGACAA GAGTTGCCAA CATAACTACT ATGAGGATGC AAAAGCCTAT GGATTCAAAA
2221ATAAACTAAT TATAGTTGCA GCTGAAACAG CTGGAAATGG ATTATATAAC TTTATTGTTC
2281CTCTCAGGGC ATATTATAGA CCAAAGAAAG AACTTAATCC CATAGTACTG CTATTGGATA
2341ACCCCCTAGA TGACTTACTC AGGTGTGGAG TGACTTTTGC TGCTAATATG GTGGTTGTGG
2401ATAAAGAGAG CACCATGAGT GCCGAGGAAG ACTACATGGC AGATGCCAAA ACCATTGTGA
2461ACGTGCAGAC ACTCTTCAGG TTGTTTTCCA GTCTCAGTAT TATCACAGAG CTAACTCACC
2521CCGCCAACAT GAGATTCATG CAATTCAGAG CCAAAGACTG TTACTCTCTT GCTCTTTCAA
2581AACTGGAAAA GAAAGAACGG GAGAGAGGCT CTAACTTGGC CTTTATGTTT CGACTGCCTT
2641TTGCTGCTGG GAGGGTGTTT AGCATCAGTA TGTTGGACAC TCTGCTGTAT CAGTCATTTG
2701TGAAGGATTA TATGATTTCT ATCACGAGAC TTCTGTTGGG ACTGGACACT ACACCAGGAT
2761CTGGGTTTCT TTGTTCTATG AAAATCACTG CAGATGACTT ATGGATCAGA ACTTATGCCA
2821GACTTTATCA GAAGTTGTGT TCTTCTACTG GAGATGTTCC CATTGGAATC TACAGGACTG
2881AGTCTCAGAA ACTTACTACA TCTGAGTCTC AAATATCTAT CAGTGTAGAA GAGTGGGAAG
2941ACACCAAAGA CTCCAAAGAA CAAGGGCACC ACCGCAGCAA CCACCGCAAC TCAACATCCA
3001GTGACCAGTC GGACCATCCC TTGCTGCGGA GAAAAAGCAT GCAGTGGGCC CGAAGACTGA
3061GCAGAAAAGG CCCAAAACAC TCTGGTAAAA CAGCTGAAAA AATAACCCAG CAGCGACTGA
3121ACCTCTACAG GAGGTCAGAA AGACAAGAGC TTGCTGAACT TGTGAAAAAT AGAATGAAAC
3181ACTTGGGTCT TTCTACAGTG GGATATGATG AAATGAATGA TCATCAAAGT ACCCTCTCCT
3241ACATCCTGAT TAACCCATCT CCAGATACCA GAATAGAGCT GAATGATGTT GTATACTTAA
3301TTCGACCAGA TCCACTGGCC TACCTTCCAA ACAGTGAGCC CAGTCGAAGA AACAGCATCT
3361GCAATGTCAC TGGTCAAGAT TCTCGGGAGG AAACTCAACT CTTGCCAACT TTCTTGTACA
3421AAGTTGGcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)

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