Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13606
- Subject:
- XM_017320512.1
- Aligned Length:
- 3447
- Identities:
- 1820
- Gaps:
- 1443
Alignment
Query 1 ATGGTTGATTTGGAGAGCGAAGTGCCCCCTCTGCCTCCCAGGTACAGGTTTCGAGATTTGCTGCTAGGGGACCA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 AGGATGGCAAAACGACGACAGGGTACAAGTTGAATTCTATATGAATGAAAATACATTTAAAGAAAGACTAAAAT 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TATTTTTCATAAAAAACCAGAGATCAAGTCTAAGGATACGCCTGTTCAATTTTTCTCTCAAATTACTAAGCTGC 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 TTATTATACATAATCCGAGTACTACTAGAAAACCCTTCACAAGGAAATGAATGGTCTCATATCTTTTGGGTGAA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 CAGAAGTCTACCTTTGTGGGGCTTACAGGTTTCAGTGGCATTGATAAGTCTGTTTGAAACAATATTACTTGGTT 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 ATCTTAGTTATAAGGGAAACATCTGGGAACAGATTTTACGAATACCCTTCATCTTGGAAATAATTAATGCAGTT 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 CCCTTCATTATCTCAATATTCTGGCCTTCCTTAAGGAATCTATTTGTCCCAGTCTTTCTGAACTGTTGGCTTGC 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 CAAACATGCCTTGGAAAATATGATTAATGATCTACACAGAGCCATTCAGCGTACACAGTCTGCAATGTTTAATC 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 AAGTTTTGATTTTAATATCTACATTACTATGCCTTATCTTCACCTGCATTTGTGGGATCCAACATCTGGAACGA 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 ATAGGAAAGAAGCTGAATCTCTTTGACTCCCTTTATTTCTGCATTGTGACGTTTTCTACTGTGGGCTTCGGGGA 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 TGTCACTCCTGAAACATGGTCCTCCAAGCTTTTTGTAGTTGCTATGATTTGTGTTGCTCTTGTGGTTCTACCCA 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 TACAGTTTGAACAGCTGGCTTATTTGTGGATGGAGAGACAAAAGTCAGGAGGAAACTATAGTCGACATAGAGCT 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 CAAACTGAAAAGCATGTCGTCCTGTGTGTCAGCTCACTGAAGATTGATTTACTTATGGATTTTTTAAATGAATT 962
Sbjct 1 -------------------------------------------------------------------------- 0
Query 963 CTATGCTCATCCTAGGCTCCAGGATTATTATGTGGTGATTTTGTGTCCTACTGAAATGGATGTACAGGTTCGAA 1036
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1037 GGGTACTGCAGATTCCAATGTGGTCCCAACGAGTTATCTACCTTCAAGGTTCAGCCCTTAAAGATCAAGACCTA 1110
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1111 TTGAGAGCAAAGATGGATGACGCTGAGGCCTGTTTTATTCTCAGTAGCCGTTGTGAAGTGGATAGGACATCATC 1184
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1185 TGATCACCAAACAATTTTGAGAGCATGGGCTGTGAAAGATTTTGCTCCAAATTGTCCTTTGTATGTCCAGATAT 1258
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1259 TAAAGCCTGAAAATAAATTTCACATCAAATTTGCTGATCATGTTGTTTGTGAAGAAGAGTTTAAATACGCCATG 1332
|||
Sbjct 1 -----------------------------------------------------------------------ATG 3
Query 1333 TTAGCTTTAAACTGTATATGCCCAGCAACATCTACACTTATTACACTACTGGTTCATACCTCTAGAGGGCA--- 1403
||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct 4 TTAGCTTTAAACTGTATATGCCCAGCAACATCTACACTCATTACACTACTGGTTCATACCTCTAGAGGGCAGTG 77
Query 1404 ------------------AGAAGGCCAGCAATCGCCAGAACAATGGCAGAAGATGTACGGTAGATGCTCCGGGA 1459
||||||.|||||.||.||.|||||.||||||||||..|||||.||.|||||.||.|
Sbjct 78 TGTGTGCTTGTGTTGCAGAGAAGGGCAGCAGTCACCTGAACAGTGGCAGAAGACTTACGGGAGGTGCTCAGGAA 151
Query 1460 ATGAAGTCTACCACATTGTTTTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGAAAGAGTTTTACATATGCC 1533
|.||||||||.|||||.||||||||||||||||||||||||||||||||||||||.|||||||||||.|||||.
Sbjct 152 ACGAAGTCTATCACATCGTTTTGGAAGAAAGTACATTTTTTGCTGAATATGAAGGGAAGAGTTTTACCTATGCT 225
Query 1534 TCTTTCCATGCACACAAAAAGTTTGGCGTCTGCTTGATTGGTGTTAGGAGGGAGGATAATAAAAACATTTTGCT 1607
|||||.|||||.||||||||||||||.|||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 226 TCTTTTCATGCCCACAAAAAGTTTGGTGTCTGCTTGGTTGGTGTTAGGAGGGAGGATAATAAAAACATTTTGCT 299
Query 1608 GAATCCAGGTCCTCGATACATTATGAATTCTACAGACATATGCTTTTATATTAATATTACCAAAGAAGAGAATT 1681
||||||||||||||||||||||||||||.||.||||||||||.||||||||||||||||||||||||||.||||
Sbjct 300 GAATCCAGGTCCTCGATACATTATGAATGCTTCAGACATATGTTTTTATATTAATATTACCAAAGAAGAAAATT 373
Query 1682 CAGCATTTAAAAACCAAGACCAGCAGAGAAAAAGCAATGTGTCCAGGTCGTTTTATCATGGACCTTCCAGATTA 1755
||||||||||.||.||||||||.|||||||||||.||||||||.|||||.|||||||||||.|||||||||||.
Sbjct 374 CAGCATTTAAGAATCAAGACCAACAGAGAAAAAGTAATGTGTCAAGGTCATTTTATCATGGGCCTTCCAGATTG 447
Query 1756 CCTGTACATAGCATAATTGCCAGCATGGGTACTGTGGCTATAGACTTGCAAGATACAAGCTGTAGATCAGCAAG 1829
|||||.||.|||||.||||||||||||||||||||||||||||||||||||||.||||||||.|||.||.||||
Sbjct 448 CCTGTCCACAGCATCATTGCCAGCATGGGTACTGTGGCTATAGACTTGCAAGACACAAGCTGCAGAGCAACAAG 521
Query 1830 TGGCCCTACCCTGTCTCTTCCTACAGAGGGAAGCAAAGAAATAAGAAGACCTAGCATTGCTCCTGTTTTAGAGG 1903
||||||.||||||.||||||||.||||||||.||||||||.|||||||||||||||||||||||||||||||||
Sbjct 522 TGGCCCCACCCTGGCTCTTCCTTCAGAGGGAGGCAAAGAATTAAGAAGACCTAGCATTGCTCCTGTTTTAGAGG 595
Query 1904 TTGCAGATACATCATCGATTCAAACATGTGATCTTCTAAGTGACCAATCAGAAGATGAAACTACACCAGATGAA 1977
|.||||||||||||||.|||||||||||.|||||.|||||||||||.||.||||||||||||||||||||||||
Sbjct 596 TGGCAGATACATCATCAATTCAAACATGCGATCTCCTAAGTGACCAGTCCGAAGATGAAACTACACCAGATGAA 669
Query 1978 GAAATGTCTTCAAACTTAGAGTATGCTAAAGGTTACCCACCTTATTCTCCATATATAGGAAGTTCACCCACTTT 2051
||||..||||||||.|||||||||||.|||||.||||||||||||||.|||||.||||||||||||||.|||||
Sbjct 670 GAAACATCTTCAAATTTAGAGTATGCCAAAGGCTACCCACCTTATTCCCCATACATAGGAAGTTCACCTACTTT 743
Query 2052 TTGTCATCTCCTTCATGAAAAAGTACCATTTTGCTGCTTAAGATTAGACAAGAGTTGCCAACATAACTACTATG 2125
||||||.||.|||||.||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 744 TTGTCACCTACTTCAAGAAAAAGTGCCATTTTGCTGCTTAAGATTAGACAAGAGTTGCCAGCATAACTACTATG 817
Query 2126 AGGATGCAAAAGCCTATGGATTCAAAAATAAACTAATTATAGTTGCAGCTGAAACAGCTGGAAATGGATTATAT 2199
||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 818 AGGACGCAAAAGCCTATGGATTCAAAAATAAACTAATTATAGTTGCAGCTGAAACAGCTGGAAATGGACTATAT 891
Query 2200 AACTTTATTGTTCCTCTCAGGGCATATTATAGACCAAAGAAAGAACTTAATCCCATAGTACTGCTATTGGATAA 2273
||.||||||||.|||||||||||||||||||||||||||||||||.|.|||||||||||.||||||||||||||
Sbjct 892 AATTTTATTGTACCTCTCAGGGCATATTATAGACCAAAGAAAGAATTAAATCCCATAGTTCTGCTATTGGATAA 965
Query 2274 CCC----------------------------------------------------------------------- 2276
|||
Sbjct 966 CCCGCCAGATATGCATTTTCTGGATGCAATCTGTTGGTTTCCAATGGTTTACTACATGGTGGGCTCTATTGACA 1039
Query 2277 -CCTAGATGACTTACTCAGGTGTGGAGTGACTTTTGCTGCTAATATGGTGGTTGTGGATAAAGAGAGCACCATG 2349
|||||||||.||.|||||||||||||||||.||||||||.||.||||||||.|||||.|||||.|||||||||
Sbjct 1040 ACCTAGATGATTTGCTCAGGTGTGGAGTGACCTTTGCTGCCAACATGGTGGTGGTGGACAAAGAAAGCACCATG 1113
Query 2350 AGTGCCGAGGAAGACTACATGGCAGATGCCAAAACCATTGTGAACGTGCAGACACTCTTCAGGTTGTTTTCCAG 2423
|||||.||||||||||||||||||||||||||.||.||||||||.||||||||.||.||||||||||||||.||
Sbjct 1114 AGTGCAGAGGAAGACTACATGGCAGATGCCAAGACGATTGTGAATGTGCAGACTCTGTTCAGGTTGTTTTCAAG 1187
Query 2424 TCTCAGTATTATCACAGAGCTAACTCACCCCGCCAACATGAGATTCATGCAATTCAGAGCCAAAGACTGTTACT 2497
|||||||||.|||||.|||||.||.||.||.||.||.||||||||||||||||||||||||||.||.|||||||
Sbjct 1188 TCTCAGTATCATCACTGAGCTTACGCATCCAGCAAATATGAGATTCATGCAATTCAGAGCCAAGGATTGTTACT 1261
Query 2498 CTCTTGCTCTTTCAAAACTGGAAAAGAAAGAACGGGAGAGAGGCTCTAACTTGGCCTTTATGTTTCGACTGCCT 2571
||||.||.||||||||||||||||||||||||.|.||..||||.||||||||||||||||||||||||||||||
Sbjct 1262 CTCTCGCGCTTTCAAAACTGGAAAAGAAAGAAAGAGAACGAGGTTCTAACTTGGCCTTTATGTTTCGACTGCCT 1335
Query 2572 TTTGCTGCTGGGAGGGTGTTTAGCATCAGTATGTTGGACACTCTGCTGTATCAGTCATTTGTGAAGGATTATAT 2645
||||||||.||.||.|||||.||||||||||||||.|||||.||.||.|||||||||||||||||.||||||||
Sbjct 1336 TTTGCTGCGGGAAGAGTGTTCAGCATCAGTATGTTAGACACCCTTCTTTATCAGTCATTTGTGAAAGATTATAT 1409
Query 2646 GATTTCTATCACGAGACTTCTGTTGGGACTGGACACTACACCAGGATCTGGGTTTCTTTGTTCTATGAAAATCA 2719
||||||||||||.||||||||.||||||||||||||.|.|||||||||.|||||||||||||||||||||||||
Sbjct 1410 GATTTCTATCACCAGACTTCTTTTGGGACTGGACACCATACCAGGATCGGGGTTTCTTTGTTCTATGAAAATCA 1483
Query 2720 CTGCAGATGACTTATGGATCAGAACTTATGCCAGACTTTATCAGAAGTTGTGTTCTTCTACTGGAGATGTTCCC 2793
|||.|||||||||.|||||||||||.|||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 1484 CTGAAGATGACTTGTGGATCAGAACGTATGCCAGACTCTATCAGAAGTTGTGTTCTTCTACTGGAGATGTTCCC 1557
Query 2794 ATTGGAATCTACAGGACTGAGTCTCAGAAACTTACTACATCTGAG---------------------TCTCAAAT 2846
||.||.||||||||.||.||.|||||||||||.||.||||||||| ||||||||
Sbjct 1558 ATCGGGATCTACAGAACAGAATCTCAGAAACTAACGACATCTGAGTCTCGAGAAATAGGATCTCAATCTCAAAT 1631
Query 2847 ATCTATCAGTGTAGAAGAGTGGGAAGACACCAAAGACTCCAAAGAACAAGGGCACCACCGCAGCAACCACCGCA 2920
|||.||.|||||.|||||||||||||||||||||||...||||||.|.||||||||||||||||...|||||||
Sbjct 1632 ATCCATTAGTGTGGAAGAGTGGGAAGACACCAAAGATGTCAAAGACCCAGGGCACCACCGCAGCCTTCACCGCA 1705
Query 2921 ACTCAACATCCAGTGACCAGTCGGACCATCCCTTGCTGCGGAGAAAAAGCATGCAGTGGGCCCGAAGACTGAGC 2994
|||||||.||.||||||||||||||||||||||||||||||||.||.||||||||||||||||||||.||||||
Sbjct 1706 ACTCAACGTCTAGTGACCAGTCGGACCATCCCTTGCTGCGGAGGAAGAGCATGCAGTGGGCCCGAAGGCTGAGC 1779
Query 2995 AGAAAAGGCCCAAAACACTCTGGTAAAACAGCTGAAAAAATAACCCAGCAGCGACTGAACCTCTACAGGAGGTC 3068
||||||||.||.||.||||||||||||||.||.|||||||||||.||.||||||||||||||||||.||||.||
Sbjct 1780 AGAAAAGGGCCGAAGCACTCTGGTAAAACTGCAGAAAAAATAACTCAACAGCGACTGAACCTCTACCGGAGATC 1853
Query 3069 AGAAAGACAAGAGCTTGCTGAACTTGTGAAAAATAGAATGAAACACTTGGGTCTTTCTACAGTGGGATATGATG 3142
.||||||||.|||||||||||||||||||||||.||||||||||||.||||.||.||.||.|||||.||.||||
Sbjct 1854 CGAAAGACAGGAGCTTGCTGAACTTGTGAAAAACAGAATGAAACACCTGGGCCTCTCGACGGTGGGCTACGATG 1927
Query 3143 AAATGAATGATCATCAAAGTACCCTCTCCTACATCCTGATTAACCCATCTCCAGATACCAGAATAGAGCTGAAT 3216
||||||||||||||||.||.|||||.|||||||||||||||||.||.||||||||.|||||..|.|||||||||
Sbjct 1928 AAATGAATGATCATCAGAGCACCCTGTCCTACATCCTGATTAATCCGTCTCCAGACACCAGGCTTGAGCTGAAT 2001
Query 3217 GATGTTGTATACTTAATTCGACCAGATCCACTGGCCTACCTTCCAAACAGTGAGCCCAGTCGAAGAAACAGCAT 3290
|||||||||||.||.||.|||||||||||||||.|||||||||||||||||||.||||||.|.|.|||||||||
Sbjct 2002 GATGTTGTATATTTGATCCGACCAGATCCACTGTCCTACCTTCCAAACAGTGAACCCAGTAGGAAAAACAGCAT 2075
Query 3291 CTGCAATGTCACTGGTCAAGATTCTCGGGAGGAAACTCAACTC 3333
||||||||.|.|||.||||||||||||||||||||||||||||
Sbjct 2076 CTGCAATGCCGCTGTTCAAGATTCTCGGGAGGAAACTCAACTC 2118
