Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13704
Subject:
XM_017011687.1
Aligned Length:
3540
Identities:
221
Gaps:
3300

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGTCTTCCCCGTTGCAAAGAGCTGTGGGAGATACCAAGAGGGCCTTGTCTGCATCTTCTAGTTCCTCTGCCAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCTACCCTTTGATGACAGGGACTCAAACCATACCTCAGAGGGGAATGGCGACTCTTTGTTAGCTGATGAAGACA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTGACTTTGAAGACAGCTTGAATCGCAATGTGAAGAAGAGAGCAGCAAAACGACCACCGAAAACAACACCGGTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCAAAACATCCAAAGAAAGGGTCCCGAGTGGTACATCGTCATAGCCGGAAACAGTCAGAGCCACCAGCCAATGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCTTTTCAATGCTGTGAAAGCCGCCAAAAGTGACATGCAGGACTCGGGGGACTACCCTCTCATAGCTCCAGGTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CATCCTGGAAGAAGTTCCAGGGCAGCTTCTGTGAATTTGTGAGGACATTGGTCTGTCAGTGCCAGTACAGCCTC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTCTATGATGGCTTCCCTATGGACGACCTCATCTCCCTGCTCACTGGCCTCTCAGACTCACAAGTCCGCGCCTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CCGTCACACTAGCACCCTGGCTGCTATGAAACTGATGACCTCCCTGGTAAAAGTTGCCCTCCAACTGAGTGTGC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  ACCAAGATAACAATCAGCGTCAGTATGAGGCTGAAAGAAACAAGGGGCCAGGGCAGAGGGCACCTGAGCGGCTG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GAGAGCCTGTTGGAGAAACGCAAAGAGCTCCAAGAGCATCAAGAGGAGATTGAGGGGATGATGAATGCCCTCTT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CAGGGGTGTCTTTGTTCATCGGTACAGGGATGTCCTTCCTGAGATCCGTGCTATCTGCATTGAGGAAATTGGGT  814

Query    1  ---------------------------------------------------------------------ATG--  3
                                                                                 |||  
Sbjct  815  GTTGGATGCAAAGCTACAGCACGTCTTTCCTCACCGACAGCTATTTAAAATATATTGGTTGGACTCTGCATGAT  888

Query    4  CAGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGCTCTGAAAGGGCTGTACGGTAACCGGGACCTGACCGCACG  77
            .|||||||||||||||||.|||||||.||||||||.|||||||||||||||||||||||||||||||||.||||
Sbjct  889  AAGCACCGAGAAGTCCGCCTGAAGTGTGTGAAGGCCCTGAAAGGGCTGTACGGTAACCGGGACCTGACCACACG  962

Query   78  CCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGATGGTTTCCATGATCGTGGACAGAGAGTACAGTGTGGCAG  151
            |||||||||||||||..||||||||||||||.||||||||||||||.||.|||||||||||||...||||||||
Sbjct  963  CCTGGAGCTCTTCACCAGCCGCTTCAAGGACCGGATGGTTTCCATGGTCATGGACAGAGAGTATGATGTGGCAG  1036

Query  152  TGGAGGCCGTCAGATTACTGATACTTATCCTTAAGAACATGGAAGGGGTGCTGATGGACGTGGACTGTGAGAGC  225
            |||||||.||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||.|||||||||
Sbjct 1037  TGGAGGCTGTCAGATTACTGATACTTATCCTTAAGAACATGGAAGGGGTGCTGACGGACGCGGATTGTGAGAGC  1110

Query  226  GTCTACCCCATTGTG-----------------------------------------------------------  240
            ||||||||..|||||                                                           
Sbjct 1111  GTCTACCCAGTTGTGTATGCCTCTCATCGAGGCCTGGCCTCTGCCGCAGGCGAATTTCTGTACTGGAAACTCTT  1184

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1185  CTACCCTGAGTGCGAGATAAGAATGATGGGTGGAAGAGAGCAACGCCAGAGCCCAGGCGCCCAGAGGACTTTCT  1258

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1259  TCCAGCTTCTGCTGTCCTTCTTTGTGGAGAGCGAGCTCCATGACCACGCTGCTTACTTAGTAGACAGTCTGTGG  1332

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1333  GACTGTGCAGGGGCTCGGCTGAAGGACTGGGAGGGTCTGACAAGCCTGCTGCTGGAGAAGGACCAGAACCTGGG  1406

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1407  TGATGTGCAGGAGAGCACACTGATAGAAATCCTTGTGTCCAGTGCCCGGCAAGCTTCAGAGGGGCACCCGCCTG  1480

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1481  TGGGCCGGGTCACTGGGAGGAAGGGCTTAACCTCTAAGGAGCGCAAGACCCAAGCCGATGACAGGGTGAAGTTG  1554

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1555  ACTGAGCACCTCATCCCCCTGCTGCCCCAGCTCCTGGCCAAGTTCTCAGCTGATGCAGAGAAGGTCACTCCCCT  1628

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1629  GCTCCAGCTTCTCAGCTGCTTTGACCTCCACATCTACTGCACTGGGCGCTTGGAGAAGCACCTGGAGCTGTTCC  1702

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1703  TGCAGCAACTCCAGGAGGTGGTGGTGAAGCATGCAGAGCCAGCGGTGCTTGAGGCTGGGGCGCATGCCCTCTAC  1776

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1777  CTGCTCTGTAATCCCGAATTCACTTTCTTCAGCCGGGCGGACTTTGCCCGCAGCCAGCTAGTAGATTTGCTGAC  1850

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1851  TGACCGCTTCCAGCAGGAGCTTGAAGAGCTGTTACAGTCGTCCTTCCTAGATGAGGATGAGGTATATAATCTGG  1924

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1925  CAGCCACTCTGAAACGCCTCTCTGCCTTCTACAACACTCATGACCTGACTCGCTGGGAGCTCTATGAGCCATGT  1998

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 1999  TGCCAACTCCTGCAGAAGGCTGTGGACACAGGAGAGGTTCCTCACCAGGTTATCCTGCCAGCCTTGACTCTTGT  2072

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2073  CTATTTTTCCATTCTCTGGACACTAACCCACATTTCTAAATCAGATGCTTCCCAGAAGCAGCTGTCGAGTTTGA  2146

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2147  GGGACAGAATGGTGGCCTTCTGTGAACTCTGCCAGAGTTGCCTCTCAGATGTGGATACTGAGATCCAGGAGCAG  2220

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2221  GCTTTTGTCTTATTAAGTGATCTACTTCTCATCTTTAGCCCTCAGATGATTGTTGGGGGCCGTGATTTCCTTAG  2294

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2295  GCCACTTGTCTTTTTTCCTGAAGCTACTCTCCAGTCTGAGCTAGCCAGCTTCCTCATGGACCACGTCTTCATCC  2368

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2369  AGCCGGGAGACCTGGGCAGTGGTGATTCCCAGGAGGATCATTTACAGATAGAGCGGCTACACCAGCGGCGCCGC  2442

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2443  CTCCTAGCCGGGTTCTGCAAGCTGTTGCTTTATGGGGTGCTGGAGATGGATGCAGCCTCAGATGTTTTCAAACA  2516

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2517  CTACAACAAGTTCTACAATGACTATGGTGACATTATCAAGGAAACATTAACTAGAGCAAGGCAGATTGACCGAA  2590

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2591  GTCATTGTTCCCGAATCCTGCTGCTGAGCCTCAAGCAGCTGTACACAGAACTGCTGCAGGAGCATGGGCCCCAG  2664

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2665  GGCCTGAATGAGCTTCCTGCCTTCATCGAGATGAGGGACCTGGCCCGGAGGTTTGCCTTGAGTTTTGGACCCCA  2738

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2739  GCAGCTGCAGAACCGTGACCTCGTGGTCATGCTACACAAGGAAGGCATCCAGTTCTCCTTGTCTGAGCTTCCTC  2812

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2813  CAGCTGGCTCCTCCAATCAGCCTCCAAATCTGGCATTCCTGGAGCTCCTTTCAGAGTTTTCCCCCCGACTCTTC  2886

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2887  CATCAGGACAAGCAGCTTTTACTGTCCTATCTAGAAAAGTGCCTGCAGCATGTCTCCCAGGCACCTGGCCATCC  2960

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 2961  CTGGGGCCCAGTCACCACCTACTGCCACTCCCTCAGCCCTGTGGAGAACACAGCAGAGACCAGCCCTCAGGTCC  3034

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3035  TCCCCAGCTCCAAGAGGAGGCGCGTTGAAGGGCCTGCCAAGCCTAACAGAGAGGACGTCTCCTCGTCCCAGGAA  3108

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3109  GAAAGTCTGCAGCTGAACAGCATCCCGCCCACGCCCACCCTCACCTCCACAGCTGTGAAGAGCAGGCAGCCCCT  3182

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3183  GTGGGGGTTGAAAGAGATGGAGGAAGAAGATGGCTCAGAGTTGGATTTTGCCCAGGGTCAGCCCGTCGCAGGCA  3256

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3257  CCGAGAGGTCAAGGTTCTTGGGTCCACAATATTTCCAGACTCCACACAACCCTTCAGGTCCTGGCCTGGGCAAC  3330

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3331  CAGCTGATGCGACTCAGCCTTATGGAAGAGGACGAGGAAGAAGAGTTAGAAATCCAGGATGAGTCAAATGAAGA  3404

Query  241  --------------------------------------------------------------------------  240
                                                                                      
Sbjct 3405  ACGGCAGGATACAGACATGCAAGCAAGTAGCTACTCTTCCACCAGTGAGCGCGGGCTGGACCTCTTAGATTCTA  3478

Query  241  --------------------------------------------------------------  240
                                                                          
Sbjct 3479  CAGAGCTGGATATTGAGATTACTGAGAGTCTTCCGTTACTAGGGCAGAGGACTGCTGTTTGC  3540

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.