Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13727
- Subject:
- XR_001741327.1
- Aligned Length:
- 6092
- Identities:
- 366
- Gaps:
- 5714
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGCTCCTCCCCGCTGCCGCCGCACGCCCCCAGCCGGTCCCGCCTCGCCTCCTCCGCGGCGGCGGCTTCCGCCCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCTTAGCTGCGCTGCCGGAGGAAACGGAAGAAGGAGCAAGCTATGGAGGGGAACAGGGATGAGGCTGAGAAATG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGTCGAGATCGCCCGGGAGGCCCTGAACGCCGGCAACCGCGAGAAGGCCCAGCGCTTCCTGCAGAAGGCCGAGA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGCTCTACCCACTGCCCTCGGCCCGCGCACTATTGGAAATAATTATGAAAAATGGAAGCACGGCTGGAAATAGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCTCATTGCCGAAAACCATCAGGTAGTGGCGATCAAAGCAAGCCTAATTGCACAAAGGACAGCACATCTGGTAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGGTGAAGGTGGAAAAGGCTATACCAAAGACCAAGTAGATGGAGTTCTCAGAGCTTTATGGATATTGGAACATT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GATATGGGATGGTGGACCTGTACCTAACACACACATAAACAAATGTAAAAATTACTATGAAGTACTTGGAGTTA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CGAAAGATGCTGGTGATGAAGATTTGAAAAAAGCTTATAGAAAGCTTGCTTTGAAGTTTCATCCAGACAAAAAC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CATGCACCTGGAGCAACAGATGCTTTTAAAAAGATTGGAAATGCTTATGCTGTTTTAAGTAATCCAGAAAAGCG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAAACAGTATGACCTCACGGGCAATGAAGAACAAGCATGTAACCACCAAAACAATGGCAGATTTAATTTCCATA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGGTTGTGAAGCTGATATAACTCCAGAAGACTTGTTTAATATATTTTTTGGGGGTGGATTTCCTTCAGGTAGT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GTACATTCTTTTTCAAATGGAAGAGCTGGTTATAGCCAACAACATCAGCATCGACATAGTGGACATGAAAGAGA 888
Query 1 -------------------------------------------ATGCCCATAATTGTATTGATCCTCGTGTCAT 31
|||||||||||||||||||||||||||||||
Sbjct 889 AGAGGAAAGAGGAGATGGAGGTTTTTCTGTGTTTATCCAGCTGATGCCCATAATTGTATTGATCCTCGTGTCAT 962
Query 32 TATTAAGCCAGTTGATGGTCTGTAATCCTCCTTATTCCTTCTATCCCAGATCTGGAACAGGGCAAACTATTAAA 105
|||||||||||||||||||||.||||||||||||||||||.|||||||||||||||||.|||||||||||||||
Sbjct 963 TATTAAGCCAGTTGATGGTCTCTAATCCTCCTTATTCCTTATATCCCAGATCTGGAACTGGGCAAACTATTAAA 1036
Query 106 ACGCAGACAGAAAACTTGGGTGGTGTTTATTATGTCAGCAAGGACTTTAAAAATGAATATAAAGGAATGTTATT 179
|.|||.||||||||||||||||.||||||||||||||.|||||||||.||||||||||||||||||||||||||
Sbjct 1037 ATGCAAACAGAAAACTTGGGTGTTGTTTATTATGTCAACAAGGACTTCAAAAATGAATATAAAGGAATGTTATT 1110
Query 180 ACAAAAGGCAGAAAAGAGTGTGGAGGAAGATTATGTGACTAATATTCGAAATAACTGCTGGAAAGAAAGACAAC 253
||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 ACAAAAGGTAGAAAAGAGTGTGGAGGAAGATTATGTGACTAATATTCGAAATAACTGCTGGAAAGAAAGACAAC 1184
Query 254 AAAAAACAGATATGCAGTATGCAGCAAAAGTATACCGTGGTGATCGACTCCGAAGGAAGTCAGATGCCTTGAGC 327
|||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||.||||||||||||||
Sbjct 1185 AAAAAACAGATATGCAGTATGCAGCAAAAGTATACCGTGATGATCGACTCCGAAGGAAGGCAGATGCCTTGAGC 1258
Query 328 ATGGACAACTGTAAAGAATTAGAGCGGCTTACCGGTCTTTATAAAGGAGGA----------------------- 378
|||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 1259 ATGGACAACTGTAAAGAATTAGAGCGGCTTACCAGTCTTTATAAAGGAGGATGAACTGGAATTTTTATTTATAC 1332
Query 379 -------------------------------------------------------------------------- 378
Sbjct 1333 CTTTTAGCGTACTCTTTATTTTTTCTGTAAGTAAGTTTGGTTTCATCATGAGGGATGAAGGAAAAGATTTGATA 1406
Query 379 -------------------------------------------------------------------------- 378
Sbjct 1407 CTGAAAACTAAACTGAATAGTTGGTTCCTGAAATCTTGGACTGTTTATGACCTACTGGCTCCTTTAAATAGTAA 1480
Query 379 -------------------------------------------------------------------------- 378
Sbjct 1481 CTGAAAACTAAAATGGAATATTTTAGTTAACGCTTCTACAAGTATTTTCATTTTAAAAGCTTACATGATTCCTA 1554
Query 379 -------------------------------------------------------------------------- 378
Sbjct 1555 ACTAAAGTGTCATGAGAAAGGATTATCACACCTGTAGCAATTTCCAGTTTTAGTGATTCTCCATTTTTTCCCTT 1628
Query 379 -------------------------------------------------------------------------- 378
Sbjct 1629 GTCATGTAAATATTTATGGAATGATCATTTTGTGTACATACAGGTTACTGCTTTTTTATTTAAATTCTTTTAGT 1702
Query 379 -------------------------------------------------------------------------- 378
Sbjct 1703 GTTTAGCTCCATGAGACACTTCAGTTTAAATTGATGGAATAAATGTTATATGACACATTTACATTTTCCTTATC 1776
Query 379 -------------------------------------------------------------------------- 378
Sbjct 1777 AAGGTGTCAAATATGTGGACTTTAAACAATGAAACTTTTTCAAAAAGAAAAAACAAAAACTTTAACTTTGTGTA 1850
Query 379 -------------------------------------------------------------------------- 378
Sbjct 1851 AAATCTTATAGTATTATCAGCTTAGAGGGAATTGATATTTTTAATATTGCCGTTATATTCCAAAATATATATTG 1924
Query 379 -------------------------------------------------------------------------- 378
Sbjct 1925 AGATAAATGAACTGGTGTAGAATATCAGTTTGCTATTTAGTTTTATGAATTACTATACATATACATGCATAGAA 1998
Query 379 -------------------------------------------------------------------------- 378
Sbjct 1999 ATGAAATGCTATACTGATAAATTTTAAAGAAAATATGAGGAAATGGCTATAAATATTAAACTAAAAGGGTCTTC 2072
Query 379 -------------------------------------------------------------------------- 378
Sbjct 2073 AACAGTAAAGTGCAGTTATGTCATTTAAAATTCCAATACTTTAAAGGCCACCAAATTTTGATGTATATGTCCTT 2146
Query 379 -------------------------------------------------------------------------- 378
Sbjct 2147 GAAGGGCTGCTAAAATTTATGAAGAGGACTCACATTTTCCCCCATAGAAATTTGCAGTTTCTTGGTGATCATTT 2220
Query 379 -------------------------------------------------------------------------- 378
Sbjct 2221 AAGCAGGATCCAAAGAAGTTCCTTTACAAATAAGTAATAAGAAAAATGAGTACTAAAATACAGCTTTGTGCCTT 2294
Query 379 -------------------------------------------------------------------------- 378
Sbjct 2295 TTAACCCTATGCCAACTCCTAAACATATAAGTAGATTACAGTATACTTATCTGATCAGAGCATGATCTGTTTGG 2368
Query 379 -------------------------------------------------------------------------- 378
Sbjct 2369 CCACATGCAAGTGTGAGCAGAAATAGAGCAGCACGTAGAATAGTAACTTAAAGCAAGTCATCCTTTAAAAATTC 2442
Query 379 -------------------------------------------------------------------------- 378
Sbjct 2443 TGAGCTAAAATCTATTTACCATTGAGTAATTGAATTAATCCCATAGGAATAAGCTCCTTGTAAGTAAATCCATG 2516
Query 379 -------------------------------------------------------------------------- 378
Sbjct 2517 ATATGAATTAGAAAAAAAAAACAGCTGGAAATTGAAGTTTTTGATGCCTGTATACTGGATATGAAACTATTTGA 2590
Query 379 -------------------------------------------------------------------------- 378
Sbjct 2591 TTTCTAGTCTTCTGTGTTTAGCAGTTGTAATATTTTAATGATTTTGCTTCATACTCGGTTAATGGAACATAAAC 2664
Query 379 -------------------------------------------------------------------------- 378
Sbjct 2665 ATATCTTTGATACTTCTTTGTGAGTGAGAGAATGCTAGATAGGGTGGCTTTGTTCTTTGTTTAAGTTTTTTTTC 2738
Query 379 -------------------------------------------------------------------------- 378
Sbjct 2739 CTGAATGTAGTTAATTTATGGCATCTGTTGAATAAAACTGCTAAAATGACCTCTTAAAAATGTTCTGTTGTATC 2812
Query 379 -------------------------------------------------------------------------- 378
Sbjct 2813 CCCTTTTCCAGGTGAATCAATAGAAATGCCTGATTGAATTAGTAGGTTAAACTAAACAACATACTGTCATAGGA 2886
Query 379 -------------------------------------------------------------------------- 378
Sbjct 2887 AAACTGGAGAGCTTAACCAACTTGCTCTTAGAAATGTTACCTTAAAAAAAAAAAAAAAGCAGTGCTTAAGAGAA 2960
Query 379 -------------------------------------------------------------------------- 378
Sbjct 2961 AATACAATTTTAATTATTTTGTTGAGCCTGCAGAGTAAGTTTTTAAAAATATAAGTTCATAGCATTTTAATTAA 3034
Query 379 -------------------------------------------------------------------------- 378
Sbjct 3035 CTTTGAAAGTTCATATGCATCAGAAAATTTATGAAAATTTGAATGAAAAAAATTTCATCTATTTATTTTTCTAA 3108
Query 379 -------------------------------------------------------------------------- 378
Sbjct 3109 TTTTAATGGCAAATTTACACTATTATGGCTGATAATTCTGTGAACTTACCTTCTTGTTGACTGATTCTTTTTCC 3182
Query 379 -------------------------------------------------------------------------- 378
Sbjct 3183 CTTAATCCCAGCTTTAAGGAGATAGGTGAAGTTATTGTACAAAGTTAAGTGATACCATAAAGTATATATTATAA 3256
Query 379 -------------------------------------------------------------------------- 378
Sbjct 3257 AGTCATACATGGCTTTTGGACAGTATTATATTTCAGTTGCAGTGCTGCATTCCATTAAATTTCATAAAATGCTA 3330
Query 379 -------------------------------------------------------------------------- 378
Sbjct 3331 GGGAAAATGTGTTTGATAAAATTTTCTGCAGTGAGAAATGACAGACTGAGTGCCTGACAATTTAAGCCACATAT 3404
Query 379 -------------------------------------------------------------------------- 378
Sbjct 3405 GAAGTATGCAAGTAAAGATTCAGTCCTTAATGTCATCTATATCATGGTATAAAAGCTCAACAAGTATCTTATAA 3478
Query 379 -------------------------------------------------------------------------- 378
Sbjct 3479 TTTGGAGTTAACTTTATAAAGTAAGAAGAGTTTGGATATCTTGATAAAAGATTTTCATGTTTGCTGCTTTTTTT 3552
Query 379 -------------------------------------------------------------------------- 378
Sbjct 3553 ATAATAAAAATCCCAACATTTTGCCATCTTATGTTTAGCTACATGAACTTCGCAATTTCATCGGCTCATTCTAA 3626
Query 379 -------------------------------------------------------------------------- 378
Sbjct 3627 TGACCACCTAAAAGTCCTCAATCTTTGAATATTGCTTTATTAGCTCCTCTAACTGGTATTCTAACAGTTTAGCA 3700
Query 379 -------------------------------------------------------------------------- 378
Sbjct 3701 GCACTTATATTTATTAATGCTTTACATTTTTACCCCTTTTTGTGTAAACACAAATACACCCATGCATATACACA 3774
Query 379 -------------------------------------------------------------------------- 378
Sbjct 3775 CAAACATTATTGTCCTTGTGAGGGTTTGGGGGAAATGAAAAATAGTACCTTTCTCCTCTTCTTTTGATTCCTTA 3848
Query 379 -------------------------------------------------------------------------- 378
Sbjct 3849 GTTCCCAAATAGACTGGTGCTAGTCATTTAGTCATCTGTAAATTTCGAAATGTAGTTTGATTAAATGTGAACTG 3922
Query 379 -------------------------------------------------------------------------- 378
Sbjct 3923 AATTCTCAGCAATGAAAAATGTCAAGTTGAATTCATCTAATAAGTGAAAATAATATATTTTGTAAACAGATTAC 3996
Query 379 -------------------------------------------------------------------------- 378
Sbjct 3997 ATTTGAACACCTAAATAAGTATTTGTTTCATAATCATTACATGCTTGTTTATGATTTACAAAGATTTGGTAGAG 4070
Query 379 -------------------------------------------------------------------------- 378
Sbjct 4071 AAAAGTACAGTCCTTAAGGCATATATATGCCAATGCATTAAACTACTCAGCTTTTGTGCCAGCTCAGGTGTTCA 4144
Query 379 -------------------------------------------------------------------------- 378
Sbjct 4145 TAGGAACAGGAATGTGGAATACCAGCTTTTTACTTTAATTATACTTTTATGCTGAATTTTTCTTCCAGTTAAAC 4218
Query 379 -------------------------------------------------------------------------- 378
Sbjct 4219 CTTTAATTACACTAGTATGTAAAGTAGTTACTGAGAAAAATAAGTTTTTGATTTCCCTTCTGTTGATCTGTAAC 4292
Query 379 -------------------------------------------------------------------------- 378
Sbjct 4293 ATTTTTAAATGAAGCTATTTAACACATGACATGCTAATGTTACTTAATGGATTCCTATGTATTTCATTAAAAAA 4366
Query 379 -------------------------------------------------------------------------- 378
Sbjct 4367 AAGTCTCCCACCTGTGTTAAGACAGCTAAATATTTCTTGATGTTGGCTTGAGGACCAAGTGAGCCATCTTGCCA 4440
Query 379 -------------------------------------------------------------------------- 378
Sbjct 4441 GTTAAGCAAGTTTTATATCAGAGGACCAAATGGTTAAGAAGAGAATTTGTACATTTCTTGAGCTTCCCCATGTG 4514
Query 379 -------------------------------------------------------------------------- 378
Sbjct 4515 AAGCTTGGGTTCAGTACTATCCTATTACTATCCATCTTCATAATGAGTGAAGCAAACTGAAAGGGAATTCATAA 4588
Query 379 -------------------------------------------------------------------------- 378
Sbjct 4589 TCTTTTTTCTTATCTGAACAGAAAAACTAATGAAAATCAACAATAAATCTTTATTTTAATTTTCATTCAACAGC 4662
Query 379 -------------------------------------------------------------------------- 378
Sbjct 4663 TGAAAAACCATGTCTGTTGACCACATTGGACCATTGCCTAGTTAAAATCCATAAAATTCCCTATAAACCAATGA 4736
Query 379 -------------------------------------------------------------------------- 378
Sbjct 4737 AAAGAAACTTGTCTGGCAATAATTTCCAACATTTTAAATTCTAATTTTTAGTTACAAAGAAAAAGGATAGAATG 4810
Query 379 -------------------------------------------------------------------------- 378
Sbjct 4811 AGGCTTTTCAAGGAATTCTTGCTCATCCCTTCAATTATTTGGCAGGTAAAACAGTCCTAGAATTCAGCTTCCTT 4884
Query 379 -------------------------------------------------------------------------- 378
Sbjct 4885 TTTGGTTTTATTACTATTAAATAGATACTTTCATATAAATGGAAACACTTTTCCTCAAAACATTAATTCAAAAC 4958
Query 379 -------------------------------------------------------------------------- 378
Sbjct 4959 ATACTCCTTATATTAAGGATTATAGCACCATATTTTTTGTATATTCCCTATGTGTAACTTTTTCCTGTTGGTAT 5032
Query 379 -------------------------------------------------------------------------- 378
Sbjct 5033 GTGATATTTTTCATTTAATATGACTATCTGCTGGTGTTGGGGCCAATAGATTTGTGAATATTCTGTGGATGTGT 5106
Query 379 -------------------------------------------------------------------------- 378
Sbjct 5107 CTATGTATAGGTGTATATATATATATATATATTTTTTTTTTTTTTTCCCAGCTAATTACCTCAAATGTGTGATT 5180
Query 379 -------------------------------------------------------------------------- 378
Sbjct 5181 GTTTAATATATACCACACTATGTTTGCACAGAGCAGGGCTTCCATTAGCAGTGGATATTTTTATGTCTGACTTT 5254
Query 379 -------------------------------------------------------------------------- 378
Sbjct 5255 GAAAATCAGTCAACACAATTTCATTGGTGTGAATTATTTGTTGCTCTTTTTCATATTTTAATGGAGAGATTCCT 5328
Query 379 -------------------------------------------------------------------------- 378
Sbjct 5329 ATTATAAGGCCCATGCTTCAAACATAATTATATCTTTCTATATCCAGCCATCTGGAAATACATAGGGGTAAGAA 5402
Query 379 -------------------------------------------------------------------------- 378
Sbjct 5403 GTATTTCTTGAAATGTCCTTGTTTAGTAAGTTAGTAAAAACTGGGATGACTAGTTGCCAAGATGTCTTGTAACT 5476
Query 379 -------------------------------------------------------------------------- 378
Sbjct 5477 GCATAGCAGATGACACCTGGCATGGCAAGTCTCATTCACTTCAGCACAACACTCTGTACATTTCAGTCTGATAT 5550
Query 379 -------------------------------------------------------------------------- 378
Sbjct 5551 TCTACTTTGCCATTTAAGGACACCATTAAAATCATAGAGATTTTCAGTGACATTGGAGTATTGTAATTATTACT 5624
Query 379 -------------------------------------------------------------------------- 378
Sbjct 5625 TTCAAAAAATTATTTTTAATAGGATGATTAAACCAATGAGAAGAAACACACATAAATGATATTTTGCAGTTTAT 5698
Query 379 -------------------------------------------------------------------------- 378
Sbjct 5699 CTGTATTAAGAAATGCTTCTTGCCAATTTCTAGTTTTAGTTTTTGGATTGCTACATAAGACTTTCTTTCCATTT 5772
Query 379 -------------------------------------------------------------------------- 378
Sbjct 5773 ACTTTATGTGTTTTTAAAAGCTGCAGGTAATTTTTAAGGTTTGATGGAATTATAATGGAAGCCTTGTATAAGTT 5846
Query 379 -------------------------------------------------------------------------- 378
Sbjct 5847 AAATGAAATTGGTAAAGGAGAGCTTACTTTGTCTATAATGCATTCAGGATTAAAAATTAGATTTCAAAATGAAA 5920
Query 379 -------------------------------------------------------------------------- 378
Sbjct 5921 TGTCTGATTTGTAAAATATTTAATGTTATATCAGACTTACATAAAATTTTCTGTGAGAACTCAAATGCATTTGA 5994
Query 379 -------------------------------------------------------------------------- 378
Sbjct 5995 TTTTTAATGAATGTTCTGAATGAAATATGAATTTTTGTCTTTCAGTCTCTGTAGTTTATCTCAATATATTAATA 6068
Query 379 ------------------------ 378
Sbjct 6069 AAAAGGTCTGTTCTCACTGTAAAA 6092
