Construct: ORF ccsbBroadEn_13727
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016151.1_s300c1, BRDN0000455307
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LOC646358 (646358)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79982 | DNAJB14 | DnaJ heat shock protein fam... | XM_017008628.2 | 41.9% | 40.2% | (many diffs) |
| 2 | human | 79982 | DNAJB14 | DnaJ heat shock protein fam... | XM_011532262.3 | 41.4% | 39.7% | (many diffs) |
| 3 | human | 79982 | DNAJB14 | DnaJ heat shock protein fam... | NM_001278310.2 | 39.1% | 37.5% | (many diffs) |
| 4 | human | 79982 | DNAJB14 | DnaJ heat shock protein fam... | NM_001031723.4 | 32.1% | 30.8% | (many diffs) |
| 5 | human | 79982 | DNAJB14 | DnaJ heat shock protein fam... | XR_001741327.1 | 6% | (many diffs) | |
| 6 | mouse | 70604 | Dnajb14 | DnaJ heat shock protein fam... | XM_006502056.2 | 34.6% | 35.8% | (many diffs) |
| 7 | mouse | 70604 | Dnajb14 | DnaJ heat shock protein fam... | XM_006502055.2 | 32.8% | 34% | (many diffs) |
| 8 | mouse | 70604 | Dnajb14 | DnaJ heat shock protein fam... | NM_001033155.1 | 28.4% | 29.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 447
- ORF length:
- 378
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCCCATAATT GTATTGATCC TCGTGTCATT ATTAAGCCAG TTGATGGTCT 121 GTAATCCTCC TTATTCCTTC TATCCCAGAT CTGGAACAGG GCAAACTATT AAAACGCAGA 181 CAGAAAACTT GGGTGGTGTT TATTATGTCA GCAAGGACTT TAAAAATGAA TATAAAGGAA 241 TGTTATTACA AAAGGCAGAA AAGAGTGTGG AGGAAGATTA TGTGACTAAT ATTCGAAATA 301 ACTGCTGGAA AGAAAGACAA CAAAAAACAG ATATGCAGTA TGCAGCAAAA GTATACCGTG 361 GTGATCGACT CCGAAGGAAG TCAGATGCCT TGAGCATGGA CAACTGTAAA GAATTAGAGC 421 GGCTTACCGG TCTTTATAAA GGAGGATTGC CAACTTTCTT GTACAAAGTT GGcattataa 481 gaaagcattg cttatcaatt tgttgcaacg aac