Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13766
- Subject:
- NR_045609.2
- Aligned Length:
- 3971
- Identities:
- 201
- Gaps:
- 3749
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGTTCCGTTTCCGGCTGGCTGAGTACTGGGGTCCAGAAAGTGATCGCTGCCGTGGTCGCCATGGGGAAGTCGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTTTCTTACTCCCAAGGCTATCGCCAACAGGATCAAGTCCAAGGGGCTGCAGAAGCTACGCTGGTATTGCCAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGTGCCAGAAGCAGTGCCGGGACGAGAATGGCTTTAAGTGTCATTGTATGTCCGAATCTCATCAGAGACAACTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTGCTGGCTTCAGAAAATCCTCAGCAGTTTATGGATTATTTTTCAGAGGAATTCCGAAATGACTTTCTAGAACT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCTCAGGAGACGCTTTGGCACTAAAAGGGTCCACAACAACATTGTCTACAACGAATACATCAGCCACCGAGAGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACATCCACATGAATGCCACTCAGTGGGAAACTCTGACTGATTTTACTAAGTGGCTGGGCAGAGAAGGCTTGTGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAAGTGGACGAGACACCAAAAGGCTGGTATATTCAGTACATAGACAGGGACCCAGAAACTATCCGCCGGCAACT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGAACTGGAGAAAAAGAAAAAGCAGGACCTTGATGATGAAGAAAAAACTGCCAAATTTATTGAAGAGCAAGTGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GAAGAGGCCTGGAAGGGAAGGAACAGGAGGTCCCTACTTTTACGGAATTAAGCAGAGAAAATGATGAAGAGAAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTCACGTTTAATTTGAGTAAAGGAGCATGTAGCTCATCCGGAGCAACATCTTCCAAGTCAAGTACTCTGGGACC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGTGCACTGAAGACGATAGGAAGTTCAGCATCAGTGAAACGAAAAGAATCTTCCCAGAGCTCAACTCAGTCTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAGAAAAGAAGAAAAAGAAATCTGCACTGGATGAAATCATGGAGATTGAAGAGGAAAAGAAAAGAACTGCCCGA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ACAGACTACTGGCTACAGCCTGAAATTATTGTGAAAATTATAACCAAGAAACTGGGAGAGAAATATCATAAGAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAAGGCTATTGTTAAGGAAGTAATTGACAAATATACAGCTGTTGTGAAGATGATTGATTCTGGAGACAAGCTGA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AACTTGACCAGACTCATTTAGAGACAGTAATTCCAGCACCAGGAAAAAGAATTCTAGTTTTAAATGGAGGCTAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGAGGAAATGAAGGTACCCTAGAATCCATCAATGAGAAGACTTTTTCAGCTACTATCGTCATTGAAACTGTGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGCTACCACGCCTTGCCTGAGTTGATCTTCTACAAGAGTTCAAACAAAAAACAGACCATACCAGGATGATCACT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TCAAACATGAGGATGGGTATAAGCTGACGTCAGACACAGGGTTGATGGGAGACCTACAGAAAATACATATAAAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CATCAGACATGAAGTCCAGCACATAGTAGGTATTGAATAAATGGCAGTGAGTGGTCATGTCCAGAAATGAAGCC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AAGAAGTTGAGCCTGGACTACTAAGAATCTGGTCTGAAGAATTTCAAAAAGGAGAATGGTTCTCCCTGATAACA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AATAGTGATGAGTAAAACCAGACAAATTACATATGCCTCCCCCAAGTATGTACGTTTGGAATCAACTTGGTGGT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTTCTTCAGAGAAAAAATGTTTCATGTCTGCCTCCCACATTTAATTCTCCAACGTCTTTCTGAAATTATTTCAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AATGAAATGAGGCAGCATACTTGAGGTTAAATTCAATAAAAAATATCTGAAGCATAAAAATACGATTATAGACT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TCACAGTAGTTTTTTCCCTCTGAGTCTGTAGAACTTGATAGAGTTTATGCTAAGCAAAATGACTGCAGATAACT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AACAACAGGTCTCATATTAGACTTTGATTTTTGAAGTATCATAAGCTATTTTTCTTTATTTCAAACATAGACTT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TACTTTTTAGAGCAGTCTCTGTGGGTTTTGACAAATGTATAATGACATGCATCTGCCACTGTAGTATCACACAG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AACAGTTTCACTGCCCTAGAAGTTTCCTGTGTTCTGTCTGTTCCCTGTCTCCCCCCAAATCCCTGCTGACCGCT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GATCTTTTTACTGTCTCCCTAGTTTTGTCTCCATCGAAGGTCATATAGTTGGAGTCACACAGGGTGTAGCTTTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TCAGATTGGCTTCTTTCACCTGGTAGAACATATGCATGTAAGGTTCCTCCATGTTGTTTTGGTTAGGTTTTTGT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGCTCGATAGCGCACTTCATTTTAGCACTGCATATTCTATTGTCTGAATGCACCACAGTTTATGCACTCACCTA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTGAAGGATATCTTGGTTGCTTACAAGGTTTGGAAATTATGAGTAAAGCTGCTACAAACATCTGTGCGCAGGTT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTTTGTGGATAGACGTTTTCAACTTATTTACGTAACGACCAAAGAGCACAATTGCTGGATCATATGCCAGGAGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTTCTGAGAAACTACCAACCTGTCTTCCAGAGTGACTGTACCATTTTGTATTCAAACGAGCAGTGAATGAGAGT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TCCTGCTGCTCTGCATCTCCGTCAGCATTTGATGTTGTCAGTGTTCTGGATTTTGGCCATCTTAATAGCTGTAC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AGTGGGATCTTGTCATTGCTTTAATTTGCATTTCTTTGATGAAGTATGATGTGGAGCATCTTTTCATGGGCTTA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TTTGCCACCTGTATATCTTCTCTGGTGAGATGTCTTTCAGGTTTTTTGCCCATTATTTAATTGGGTTACTCATT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTCTTATTGTTGAATTTTAAGAGTTGTTTGTATATTTCAGTTGTGTTCTTTATCGAATGTGTCTTTTGCAAGTA 2738
Query 1 ---------ATGGGGGGCGGAGTGAGCGGTGAACACACTGAACAGAATCTGA----GATTTAA----------- 50
| |.| ||||..|.|| || |||.| |.|||||
Sbjct 2739 TTTTCTCTCA-----GTC--AGTGGCCTGT-------CT--------TCTCATTTTGTTTTAAGCTATTCTTTT 2790
Query 51 -TAA---GCCAA----ATCAACAATGTGGGAAGTTCG-------------------------TTTTGTTTTTTT 91
||| .|||| .||| ||| ||||.|||||||
Sbjct 2791 TTAACACCCCAAGATTTTCA--------------TCGTTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2850
Query 92 TTTTTGAGACGGAGTCTCGCTCTGTCACCCAGG-----CTGC--AGTGCAATGGCACGATCTCGGCTCACTGCA 158
||||||||||||||||||||||||||.|||||| |||| |.||||.||||.|.||||||||||||||||
Sbjct 2851 TTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCCGGACTGCGGACTGCAGTGGCGCAATCTCGGCTCACTGCA 2924
Query 159 AGCTCCGCCTCTCAGGTTCACGCCATTCTCCTGCCTCAGCCTTCCCAGTAGCTGGGACTACAGGCGCCCGCCAC 232
||||||||.||.|.||||||||||||||||||||||||||||.||.||||||||||||||||||||||||||||
Sbjct 2925 AGCTCCGCTTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCGCCAC 2998
Query 233 CATGCCCGGCTAATTTTTTGTATTTT------------------------------------------------ 258
|..|||||||||||||||||||||||
Sbjct 2999 CGCGCCCGGCTAATTTTTTGTATTTTTAGTACATCGTTACTTTTAAGACCACTGTGCACACATAAAATACTAAA 3072
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3073 AGCTAAACTTAATATCTGCAGGTAGAAGTTTTAAATTCAAGATTTTAACCAAATAACAGAGTTAATGCTAAAAT 3146
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3147 CTCACTTTTGAAGTTTATGTTGAATATTAGCATTCTAATATTTAATATTTTTCTATTTTTGAAATAGGAAATGG 3220
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3221 AAAAGATGCAGTAGGTTTTTCAAAAGGGTATCATAGGTGAGCACTTCTTATAGAAGAAGAAAACTAAGAGGTAG 3294
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3295 TGCTATTTACCTCTTCAGCACTAAGTTTATCTTTATTTTTATTTATTTCTATAAAGAGATGGGAGTCTCACTGT 3368
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3369 GTTGCTTAGGCTGGTCTTGAACTCCTGGCCTCCAGTGATGCTCCTGCCTTGGCCTCCGAGAGTGCTGGGATTAT 3442
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3443 AGGCATGAGGCACCACACCCAGCCAGTAATCTTTAGCTTCTAGAAACAATCAGATTTCCTTAAGATTTTGCAAT 3516
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3517 TAGGTTTAGAGGAGCTCACTTGCTTTTTCAAATATGGGTTGGATATGTCCAAAAAAAGAGTTTTGCCTCTACAA 3590
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3591 TGAAAAATGATTTTTACCAGATTATGGAAAGGAAGATTCATAAAAATGTGCCTTTAAAAAGCTTTTTTAAAGTG 3664
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3665 CAAGTTCACCAATTTGACTTTTGAAAATACGTTCATTTTAGGAATTGATTTTTTAAGGAAAGTTGTAAACACAG 3738
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3739 CAAAGCACAGAATTACACTGGTTCAGACTTGCATCTTAGCACCAAAATCCACTATACAAATGCAGACAGCATAA 3812
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3813 AGTAACCTAGTTTCGCTTTAAATTTGTTGCTTATTTTATTCTCCCTTATAAATGTCATTGGTCTTTTGTTAGAA 3886
Query 259 ------------------------------------------------- 258
Sbjct 3887 CATAATTTACTACTTTATTTTGAAATAAAGTCTAAGATTTAGCATGTAA 3935