Construct: ORF ccsbBroadEn_13766

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000504.1_s300c1, BRDN0000385712
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 147166 TRIM16L tripartite motif containing... NM_001353226.2 47.1% 8.3% (many diffs)
2 human 112267959 LOC112267959 uncharacterized protein C9o... XM_024446606.1 44.2% 10.1% (many diffs)
3 human 107984351 LOC107984351 protein GVQW2-like XM_017018633.1 38.9% 33% (many diffs)
4 human 107984344 LOC107984344 uncharacterized LOC107984344 XR_001748282.2 17.1% (many diffs)
5 human 107984686 LOC107984686 uncharacterized LOC107984686 XR_001750796.1 16% (many diffs)
6 human 107984686 LOC107984686 uncharacterized LOC107984686 XR_001750795.1 15.6% (many diffs)
7 human 414761 HCG15 HLA complex group 15 NR_135289.2 12.2% (many diffs)
8 human 100820709 LINC00501 long intergenic non-protein... NR_047465.1 11.1% (many diffs)
9 human 107986123 LOC107986123 uncharacterized LOC107986123 XR_001740873.1 7.4% (many diffs)
10 human 105372997 LOC105372997 uncharacterized LOC105372997 XR_001755493.2 6% (many diffs)
11 human 105372997 LOC105372997 uncharacterized LOC105372997 XR_938167.3 5.4% (many diffs)
12 human 22944 KIN Kin17 DNA and RNA binding p... NR_045609.2 5% (many diffs)
13 human 101929703 LOC101929703 uncharacterized LOC101929703 XR_002958367.1 4.9% (many diffs)
14 human 4705 NDUFA10 NADH:ubiquinone oxidoreduct... NR_136158.2 4.6% (many diffs)
15 human 123355 LRRC28 leucine rich repeat contain... NR_135754.2 3.9% (many diffs)
16 human 10157 AASS aminoadipate-semialdehyde s... XR_001744523.1 3.8% (many diffs)
17 human 10157 AASS aminoadipate-semialdehyde s... XR_001744514.1 3.8% (many diffs)
18 human 123355 LRRC28 leucine rich repeat contain... NR_135756.2 3.8% (many diffs)
19 human 10157 AASS aminoadipate-semialdehyde s... XR_001744519.1 3.8% (many diffs)
20 human 10157 AASS aminoadipate-semialdehyde s... XR_927326.2 3.8% (many diffs)
21 human 10157 AASS aminoadipate-semialdehyde s... XR_001744524.1 3.8% (many diffs)
22 human 123355 LRRC28 leucine rich repeat contain... NR_135753.2 3.8% (many diffs)
23 human 10157 AASS aminoadipate-semialdehyde s... XR_001744521.1 3.8% (many diffs)
24 human 10157 AASS aminoadipate-semialdehyde s... XR_001744515.1 3.7% (many diffs)
25 human 10157 AASS aminoadipate-semialdehyde s... XR_001744516.1 3.7% (many diffs)
26 human 123355 LRRC28 leucine rich repeat contain... NR_135757.2 3.7% (many diffs)
27 human 10157 AASS aminoadipate-semialdehyde s... XR_001744520.1 3.7% (many diffs)
28 human 10157 AASS aminoadipate-semialdehyde s... XR_001744522.1 3.7% (many diffs)
29 human 123355 LRRC28 leucine rich repeat contain... NR_135758.2 3.7% (many diffs)
30 human 10157 AASS aminoadipate-semialdehyde s... XR_242220.3 3.7% (many diffs)
31 human 10157 AASS aminoadipate-semialdehyde s... XR_001744517.1 3.7% (many diffs)
32 human 123355 LRRC28 leucine rich repeat contain... NR_135759.2 3.6% (many diffs)
33 human 123355 LRRC28 leucine rich repeat contain... NR_135755.2 3.5% (many diffs)
34 human 105376050 LOC105376050 uncharacterized LOC105376050 XR_929618.3 3.2% (many diffs)
35 human 4705 NDUFA10 NADH:ubiquinone oxidoreduct... NR_136157.2 2.8% (many diffs)
36 human 54617 INO80 INO80 complex ATPase subunit XR_001751322.2 2.8% (many diffs)
37 human 4705 NDUFA10 NADH:ubiquinone oxidoreduct... NR_136156.2 2.8% (many diffs)
38 human 4705 NDUFA10 NADH:ubiquinone oxidoreduct... NR_136155.2 2.7% (many diffs)
39 human 107984570 LINC00444 long intergenic non-protein... XR_001749867.2 2.4% (many diffs)
40 human 9687 GREB1 growth regulating estrogen ... XR_001739081.2 2.2% (many diffs)
41 human 26263 FBXO22 F-box protein 22 NR_037623.2 1.8% (many diffs)
42 human 105373618 LOC105373618 uncharacterized LOC105373618 XR_923330.3 1.3% (many diffs)
43 human 107987057 LOC107987057 uncharacterized LOC107987057 XR_001746639.2 1.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
324
ORF length:
258
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GGGCGGAGTG AGCGGTGAAC ACACTGAACA GAATCTGAGA TTTAATAAGC
121CAAATCAACA ATGTGGGAAG TTCGTTTTGT TTTTTTTTTT TGAGACGGAG TCTCGCTCTG
181TCACCCAGGC TGCAGTGCAA TGGCACGATC TCGGCTCACT GCAAGCTCCG CCTCTCAGGT
241TCACGCCATT CTCCTGCCTC AGCCTTCCCA GTAGCTGGGA CTACAGGCGC CCGCCACCAT
301GCCCGGCTAA TTTTTTGTAT TTTTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa
361agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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