Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13766
Subject:
XR_001744514.1
Aligned Length:
5776
Identities:
222
Gaps:
5533

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTTCCCGGCCTTCCATCCCAGTTTCTTCTAGGAATTCGGAGCCTCCCCTGCAGCGACTCGGAAGATTCGAGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGCGGGGGACAAGTCGGCGCCCCAGAGCGGACGAGTCACCAGGTGTCAAGATGCTGCAAGTACATAGGACTGGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CTGGGCAGGCTGGGGGTCAGCCTCTCCAAGGGTCTTCACCACAAAGCTGTGTTGGCCGTCCGGAGGGAGGATGT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAACGCCTGGGAGAGAAGGGCCCCGCTAGCTCCCAAGCACATCAAAGGCATCACCAATCTGGGATACAAGGTCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGATACAGCCTTCGAATCGGCGGGCCATTCATGATAAGGACTATGTCAAAGCTGGTGGCATTCTTCAGGAGGAT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ATTTCTGAAGCTTGTCTAATTTTAGGAGTTAAAAGACCTCCAGAGGAAAAATTAATGTCCAGGAAGACTTATGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ATTTTTCTCCCACACAATAAAAGCTCAGGAGGCCAATATGGGCTTGTTGGATGAGATTCTAAAACAGGAAATTC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCCTTATTGATTATGAGAAAATGGTGGATCATAGAGGAGTACGGGTAGTGGCATTTGGACAGTGGGCTGGTGTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GCAGGAATGATCAACATTTTACATGGAATGGGTTTAAGGCTCCTTGCTTTGGGACATCACACACCTTTTATGCA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CATTGGCATGGCTCATAACTACAGGAATAGCAGTCAGGCTGTGCAAGCTGTCCGTGATGCTGGCTATGAAATAT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CTTTGGGTTTGATGCCTAAGTCAATAGGACCCTTAACATTTGTGTTCACAGGAACTGGTAATGTTTCTAAGGGA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GCCCAAGCAATCTTTAATGAGCTACCTTGTGAATATGTGGAGCCCCATGAATTAAAAGAAGTTTCCCAAACTGG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGACCTCAGAAAAGTGTATGGGACGGTGTTAAGTCGTCATCATCATCTTGTCAGGAAAACAGATGCTGTGTATG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  ATCCTGCAGAGTATGACAAACATCCGGAGCGCTACATAAGTCGTTTTAATACTGATATTGCACCCTATACAACT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TGCTTAATTAATGGAATCTACTGGGAACAAAACACTCCTCGCCTCCTAACCCGCCAAGATGCTCAGAGTCTCCT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GGCTCCGGGCAAGTTCTCACCTGCTGGTGTGGAAGGCTGCCCTGCATTACCACACAAACTCGTGGCAATATGTG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  ACATTTCAGCTGACACAGGAGGGTCTATAGAGTTTATGACTGAGTGTACAACAATAGAGCATCCCTTTTGCATG  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TATGATGCAGACCAGCATATTATTCATGACAGTGTTGAAGGCTCGGGGATCCTGATGTGTTCCATTGACAATTT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GCCGGCACAGCTCCCAATTGAAGCTACAGAATGCTTTGGAGACATGCTTTACCCTTATGTTGAAGAAATGATAT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TATCAGACGCGACACAGCCTCTTGAAAGTCAGAATTTTTCTCCTGTGGTGAGAGATGCAGTGATTACATCCAAC  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GGTACATTACCTGATAAATATAAATATATCCAGACACTCCGGGAGAGCAGGGAACGTGCTCAGTCACTTTCAAT  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GGGCACCAGGAGAAAGGTTTTGGTTCTTGGATCTGGCTACATATCTGAGCCTGTATTAGAATATTTATCAAGAG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  ATGGCAATATAGAAATAACAGTAGGATCTGACATGAAGAATCAAATTGAACAGTTAGGCAAGAAATATAATATT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AATCCTGTTAGCATGGACATTTGTAAACAAGAAGAGAAGCTGGGCTTCTTGGTGGCAAAACAGGATCTTGTCAT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CAGCTTGTTGCCTTATGTATTGCACCCTCTTGTGGCCAAGGCCTGCATCACAAACAAAGTTAACATGGTCACTG  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  CAAGCTACATCACACCAGCACTAAAAGAATTGGAAAAGAGTGTGGAAGATGCTGGCATCACAATCATTGGTGAA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTGGGATTGGACCCTGGTCTGGATCACATGTTAGCAATGGAAACAATAGATAAAGCCAAGGAAGTGGGAGCCAC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GATTGAATCATATATTTCCTACTGTGGTGGGCTTCCAGCCCCTGAACATTCAAACAATCCATTGAGATATAAAT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TTAGCTGGAGTCCAGTGGGAGTTTTGATGAATGTAATGCAGTCTGCCACCTATCTGCTCGATGGAAAGGTTGTG  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AATGTTGCAGGAGGCATCTCCTTTCTTGATGCCGTTACGTCCATGGATTTTTTTCCAGGATTAAATTTGGAAGG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CTATCCTAACAGAGACAGTACGAAATATGCTGAGATTTATGGCATTTCTTCTGCTCACACTTTGTTGCGGGGGA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  CACTGAGATATAAGGGATATATGAAAGCTTTGAATGGATTTGTAAAATTAGGTCTTATAAACAGAGAAGCGCTT  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CCTGCCTTTAGACCTGAGGCCAACCCTCTCACCTGGAAACAACTCCTCTGTGACCTAGTTGGGATTTCACCCTC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  CTCTGAGCATGATGTGTTGAAGGAAGCTGTTCTTAAGAAACTAGGAGGAGACAATACCCAGTTGGAGGCTGCTG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  AATGGTCCTGAAGAAAAAGATATGATTGTGATGAGAGACAGCTTTGGAATCAGACATCCTTCTGGACATTTAGA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  ACATAAAACGATTGATCTTGTGGCTTATGGGGACATCAATGGCTTTTCAGCCATGGCTAAAACCGTGGGGTTAC  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  CCACCGCCATGGCAGCCAAAATGTTGCTTGATGGTGAAATTGGAGCCAAAGGCCTAATGGGGCCCTTTTCAAAG  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  GAGATCTATGGACCAATATTGGAGCGAATTAAAGCAGAAGGCATTATATATACTACACAGAGTACAATTAAACC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ATAATTGGGAATTATATTTTGTTTTTTTCTTCCCAGGCAATACACCTCTGAACATGTGTGTGATAAATGGGTTT  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  GCTAATGTGCTGTTTTAAAGTATAAAGCATAATATGTTTTGGTTAACACAATGTACTTTTTGAACTATAAATCT  2960

Query    1  ----------ATGG--------GGGGC-GGAG-TG--AGCGGTGAACACACTGAACAGAATCTGAGATTTAATA  52
                      ||||        ||..| |||| ||  |||        |||| ||||||    ||..|||||||
Sbjct 2961  TTATTTTAATATGGAAATGTTTGGAACAGGAGATGCAAGC--------CACT-AACAGA----GAACTTTAATA  3021

Query   53  AGCCAA-----------ATCAACA---ATGTGGGAAG-------------------------------------  75
            |..|.|           ||.||.|   |||| |.|||                                     
Sbjct 3022  ATTCTACCCTGTATTTTATAAATACGTATGT-GAAAGTGATGATCATGCTATTTGTTAATTTATTGTGCCACTT  3094

Query   76  ---TTCGTTTTGTTTTTT--------------TTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGCAGTG  132
               ||| |||||||||||              ||||||||||.||||||||||||||||||||||||||.||||
Sbjct 3095  TTTTTC-TTTTGTTTTTTTTTTGTTGTTGTTGTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTG  3167

Query  133  CAATGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCTCAGGTTCACGCCATTCTCCTGCCTCAGCCTTCCCAG  206
            ||.||||.|||||||||||||||||||||||||||||...||||||||||||||||||||||||||||.||.||
Sbjct 3168  CAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAG  3241

Query  207  TAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCT-AATTTTTTGTATTTT---------------------  258
            |||||||||||||||||.||||||||||.|||||||| |||||||||||||||                     
Sbjct 3242  TAGCTGGGACTACAGGCACCCGCCACCACGCCCGGCTAAATTTTTTGTATTTTTCAGTAGAGACGGGGTTTCAC  3315

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3316  CATGTTAGCCAGGATGTCCACTTTTTTCTTAAATGAACATATTGTCTTATAACCAGCAAATGAAGTTTTACTTT  3389

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3390  TTTAGTCAGAAAAAATTTCGTCATAAAGCTATATTTTTATATTTTTAAAATTGATACAGTTAGATACCTTCAGA  3463

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3464  TTACCTAAGTTAAGTTTTTGCCAAAATGCTATTTTATGCCCTTTTTGTAAAGTTATGATTTATTTTGTAAATAT  3537

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3538  AGTTCCTTATAGTTTTCTCTTGAGTGTTTGGACATGAGAATAGATAAGATTAAATTACAATTTACAAGATCACT  3611

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3612  TCATTAGGCACAGGAAAAGTATTTAACAAAATTCAACACCCTTTCACAATAAAAAATAAAAAATAAAAAACCCT  3685

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3686  CAACAAACTAGGAATAGAAGGAAACTTCCTCAACCTGATAAAGGGCATCTATGAAGAACCCATGGTTAGCATCA  3759

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3760  TACTTAATGGTGAAGGACTGGATTATTTCCCCCTGAGATCAGAAACAAGACAAGGATGTCTGCTTTGGCCATTT  3833

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3834  CTATTCAACTTGTACTGGACAGTCAAGAAAGGGCAATTAGGCAAGAAAATAAAATAAAAGTCATCTAGGTTGGA  3907

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3908  AAGGAAGAAGTATAACTAAATAGAGATGGGAGACGATATGGTGGTTTTGTGCATAGTAATCCAAGGGAAAACTA  3981

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3982  TAGAAAATCCAAAGGCATGATTTATTAATAAATAAATTCAGCAAAGTTACAGGATACAGGATTAAATATGCAGA  4055

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4056  AATTGGTTATCTTTCAATATAGTATCAATGAATAAATCAAAAATGATGTTAAGAAAACAATTTAATTTTCAACA  4129

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4130  ATGGTCAAGCTTGGTGGCTTGTGCCTGTAATCCCAACACTTTGGGAGTCTGAGGCAGAAAGACTGCTAGAGGCC  4203

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4204  AGGAGACCAGCCTGGGAAACAGTGAGATCCCATCTCTACAAAAACAAACAAACAAAAAACAACAAGCAAACAAA  4277

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4278  AAACAGCTGGATGTGATGACACTCATCTGTCGTCTCAGCTACTCAGAGGCTGAGGTGTAAGGATGGCTTGAGCC  4351

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4352  CCAAAGTTCGAAGCTGCAATGAGCTATAACTGGGTCACTGCAATCCAGCCTGGATGACAGAGTTAGACCTTGAC  4425

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4426  TCAAAAAAAACAAAAAAGAAAAGAAAAAAATTGACAGCATCAGAAAGAGTAAAATACCAATATAATTGAGGGTC  4499

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4500  CAGAAATATTGATCACATTTATCATCAACTGACTTTTGAAAATAGTGCTAAGACAATTCAATGGGGGCAAAATA  4573

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4574  GTCTTTTTCATTAAATGATGCTTGGAAACATGGATATCCACATGCAAAATAATGAAATTGGACTCCTACCTCAT  4647

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4648  ATTGCATATAAAAATTAACTCAAAGTTGACCTAAGATCTAAATGTAAGAGCTAATATTGTAAGTATCTTCAAAG  4721

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4722  AAAACATGGCGTAAATCTTTCTGACTTTGAATTAGGCAATGATTTCTTAAATAAATGACACTAAAAACACAAGC  4795

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4796  AACAAAAGAAGAAAATAGGTAAATTAAAATTAAAACCATTTGTGTTTCCAAGGACAATATCAAGAAAGCAAAAA  4869

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4870  TACAACCCACAGAATGAGATAATTTTTTTTAAAATCATGTATTAGTTAAGGGAGGAATTTGTATTTAGAATATG  4943

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4944  TAAAGAACTGTTACAATAATAATTAAAAGGCATATAATTCAATTTTTAAAAATCAACAAGAGATCTGAATTAAC  5017

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5018  AGTTCTCCAAAGAAGATACACAAAAGGCCAATAAGCACATGAAAAGGTTCTCAACATCACTAGCCATCAGGGAA  5091

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5092  ATGCAAATGAGATCTACAATGAGATATCACTTAACACTCACTGGAATAGATATATAATCAAAGTGATAATATCA  5165

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5166  AGTGTTGGTGAGGATGCAGAGAAATTGGAACCCTCATGCACTGTTGGTGGATACCCACGTGATATAAAAACAAA  5239

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5240  TGTCTACACAAAAACTTGTGCACAGATGTTCTTTGCAGCATTATTTATAATAGCCCAAAATTGAAACAGCCCTA  5313

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5314  ATTTCTATCAACTAACAAGTGAATAAACAAAACGTGGCATATCCATACAAGGAATATTATTCAGCAATAAAAAA  5387

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5388  AGAGATGAAGTACTGATATGCACCACAACATGGAAAAACCTTGAAAACATATCAAGTGAAGAATGCCAGACATG  5461

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5462  AAAGGCCACATATTATATGATTTCATTTATATGAAATGTCCAGAACAGGCGAATATATATAGAGAGAAGGCAGA  5535

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5536  TTAGTGGTTGCTTAGGCTGAAGGGTTGGGGAGGACAAAGGGGTGACTGCTAATTAGTATGGGGTTTCTTTTTTG  5609

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5610  GGGTGATGTAAACGTTGTAAAGTTGATTGTGGTAATGGTGGCACAACTCTGAATATACTAAAAACCACTGAATT  5683

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 5684  GTATACTTTGAATGTTTGAACTGTGTGGTATGTAGATTTTATCTCAAGTTGTTATAAAAAATTAAATTACAAAT  5757

Query  259  ----  258
                
Sbjct 5758  GCAA  5761

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