Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13766
- Subject:
- XR_001744514.1
- Aligned Length:
- 5776
- Identities:
- 222
- Gaps:
- 5533
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTCCCGGCCTTCCATCCCAGTTTCTTCTAGGAATTCGGAGCCTCCCCTGCAGCGACTCGGAAGATTCGAGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCGGGGGACAAGTCGGCGCCCCAGAGCGGACGAGTCACCAGGTGTCAAGATGCTGCAAGTACATAGGACTGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGGGCAGGCTGGGGGTCAGCCTCTCCAAGGGTCTTCACCACAAAGCTGTGTTGGCCGTCCGGAGGGAGGATGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAACGCCTGGGAGAGAAGGGCCCCGCTAGCTCCCAAGCACATCAAAGGCATCACCAATCTGGGATACAAGGTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGATACAGCCTTCGAATCGGCGGGCCATTCATGATAAGGACTATGTCAAAGCTGGTGGCATTCTTCAGGAGGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTCTGAAGCTTGTCTAATTTTAGGAGTTAAAAGACCTCCAGAGGAAAAATTAATGTCCAGGAAGACTTATGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTTTCTCCCACACAATAAAAGCTCAGGAGGCCAATATGGGCTTGTTGGATGAGATTCTAAAACAGGAAATTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCTTATTGATTATGAGAAAATGGTGGATCATAGAGGAGTACGGGTAGTGGCATTTGGACAGTGGGCTGGTGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCAGGAATGATCAACATTTTACATGGAATGGGTTTAAGGCTCCTTGCTTTGGGACATCACACACCTTTTATGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CATTGGCATGGCTCATAACTACAGGAATAGCAGTCAGGCTGTGCAAGCTGTCCGTGATGCTGGCTATGAAATAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTTGGGTTTGATGCCTAAGTCAATAGGACCCTTAACATTTGTGTTCACAGGAACTGGTAATGTTTCTAAGGGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCCCAAGCAATCTTTAATGAGCTACCTTGTGAATATGTGGAGCCCCATGAATTAAAAGAAGTTTCCCAAACTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGACCTCAGAAAAGTGTATGGGACGGTGTTAAGTCGTCATCATCATCTTGTCAGGAAAACAGATGCTGTGTATG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATCCTGCAGAGTATGACAAACATCCGGAGCGCTACATAAGTCGTTTTAATACTGATATTGCACCCTATACAACT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGCTTAATTAATGGAATCTACTGGGAACAAAACACTCCTCGCCTCCTAACCCGCCAAGATGCTCAGAGTCTCCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGCTCCGGGCAAGTTCTCACCTGCTGGTGTGGAAGGCTGCCCTGCATTACCACACAAACTCGTGGCAATATGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACATTTCAGCTGACACAGGAGGGTCTATAGAGTTTATGACTGAGTGTACAACAATAGAGCATCCCTTTTGCATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TATGATGCAGACCAGCATATTATTCATGACAGTGTTGAAGGCTCGGGGATCCTGATGTGTTCCATTGACAATTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCCGGCACAGCTCCCAATTGAAGCTACAGAATGCTTTGGAGACATGCTTTACCCTTATGTTGAAGAAATGATAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TATCAGACGCGACACAGCCTCTTGAAAGTCAGAATTTTTCTCCTGTGGTGAGAGATGCAGTGATTACATCCAAC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGTACATTACCTGATAAATATAAATATATCCAGACACTCCGGGAGAGCAGGGAACGTGCTCAGTCACTTTCAAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGGCACCAGGAGAAAGGTTTTGGTTCTTGGATCTGGCTACATATCTGAGCCTGTATTAGAATATTTATCAAGAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATGGCAATATAGAAATAACAGTAGGATCTGACATGAAGAATCAAATTGAACAGTTAGGCAAGAAATATAATATT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AATCCTGTTAGCATGGACATTTGTAAACAAGAAGAGAAGCTGGGCTTCTTGGTGGCAAAACAGGATCTTGTCAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAGCTTGTTGCCTTATGTATTGCACCCTCTTGTGGCCAAGGCCTGCATCACAAACAAAGTTAACATGGTCACTG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CAAGCTACATCACACCAGCACTAAAAGAATTGGAAAAGAGTGTGGAAGATGCTGGCATCACAATCATTGGTGAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TTGGGATTGGACCCTGGTCTGGATCACATGTTAGCAATGGAAACAATAGATAAAGCCAAGGAAGTGGGAGCCAC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GATTGAATCATATATTTCCTACTGTGGTGGGCTTCCAGCCCCTGAACATTCAAACAATCCATTGAGATATAAAT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTAGCTGGAGTCCAGTGGGAGTTTTGATGAATGTAATGCAGTCTGCCACCTATCTGCTCGATGGAAAGGTTGTG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AATGTTGCAGGAGGCATCTCCTTTCTTGATGCCGTTACGTCCATGGATTTTTTTCCAGGATTAAATTTGGAAGG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTATCCTAACAGAGACAGTACGAAATATGCTGAGATTTATGGCATTTCTTCTGCTCACACTTTGTTGCGGGGGA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CACTGAGATATAAGGGATATATGAAAGCTTTGAATGGATTTGTAAAATTAGGTCTTATAAACAGAGAAGCGCTT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CCTGCCTTTAGACCTGAGGCCAACCCTCTCACCTGGAAACAACTCCTCTGTGACCTAGTTGGGATTTCACCCTC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CTCTGAGCATGATGTGTTGAAGGAAGCTGTTCTTAAGAAACTAGGAGGAGACAATACCCAGTTGGAGGCTGCTG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AATGGTCCTGAAGAAAAAGATATGATTGTGATGAGAGACAGCTTTGGAATCAGACATCCTTCTGGACATTTAGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ACATAAAACGATTGATCTTGTGGCTTATGGGGACATCAATGGCTTTTCAGCCATGGCTAAAACCGTGGGGTTAC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 CCACCGCCATGGCAGCCAAAATGTTGCTTGATGGTGAAATTGGAGCCAAAGGCCTAATGGGGCCCTTTTCAAAG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GAGATCTATGGACCAATATTGGAGCGAATTAAAGCAGAAGGCATTATATATACTACACAGAGTACAATTAAACC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ATAATTGGGAATTATATTTTGTTTTTTTCTTCCCAGGCAATACACCTCTGAACATGTGTGTGATAAATGGGTTT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GCTAATGTGCTGTTTTAAAGTATAAAGCATAATATGTTTTGGTTAACACAATGTACTTTTTGAACTATAAATCT 2960
Query 1 ----------ATGG--------GGGGC-GGAG-TG--AGCGGTGAACACACTGAACAGAATCTGAGATTTAATA 52
|||| ||..| |||| || ||| |||| |||||| ||..|||||||
Sbjct 2961 TTATTTTAATATGGAAATGTTTGGAACAGGAGATGCAAGC--------CACT-AACAGA----GAACTTTAATA 3021
Query 53 AGCCAA-----------ATCAACA---ATGTGGGAAG------------------------------------- 75
|..|.| ||.||.| |||| |.|||
Sbjct 3022 ATTCTACCCTGTATTTTATAAATACGTATGT-GAAAGTGATGATCATGCTATTTGTTAATTTATTGTGCCACTT 3094
Query 76 ---TTCGTTTTGTTTTTT--------------TTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGCAGTG 132
||| ||||||||||| ||||||||||.||||||||||||||||||||||||||.||||
Sbjct 3095 TTTTTC-TTTTGTTTTTTTTTTGTTGTTGTTGTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTG 3167
Query 133 CAATGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCTCAGGTTCACGCCATTCTCCTGCCTCAGCCTTCCCAG 206
||.||||.|||||||||||||||||||||||||||||...||||||||||||||||||||||||||||.||.||
Sbjct 3168 CAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAG 3241
Query 207 TAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCT-AATTTTTTGTATTTT--------------------- 258
|||||||||||||||||.||||||||||.|||||||| |||||||||||||||
Sbjct 3242 TAGCTGGGACTACAGGCACCCGCCACCACGCCCGGCTAAATTTTTTGTATTTTTCAGTAGAGACGGGGTTTCAC 3315
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3316 CATGTTAGCCAGGATGTCCACTTTTTTCTTAAATGAACATATTGTCTTATAACCAGCAAATGAAGTTTTACTTT 3389
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3390 TTTAGTCAGAAAAAATTTCGTCATAAAGCTATATTTTTATATTTTTAAAATTGATACAGTTAGATACCTTCAGA 3463
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3464 TTACCTAAGTTAAGTTTTTGCCAAAATGCTATTTTATGCCCTTTTTGTAAAGTTATGATTTATTTTGTAAATAT 3537
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3538 AGTTCCTTATAGTTTTCTCTTGAGTGTTTGGACATGAGAATAGATAAGATTAAATTACAATTTACAAGATCACT 3611
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3612 TCATTAGGCACAGGAAAAGTATTTAACAAAATTCAACACCCTTTCACAATAAAAAATAAAAAATAAAAAACCCT 3685
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3686 CAACAAACTAGGAATAGAAGGAAACTTCCTCAACCTGATAAAGGGCATCTATGAAGAACCCATGGTTAGCATCA 3759
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3760 TACTTAATGGTGAAGGACTGGATTATTTCCCCCTGAGATCAGAAACAAGACAAGGATGTCTGCTTTGGCCATTT 3833
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3834 CTATTCAACTTGTACTGGACAGTCAAGAAAGGGCAATTAGGCAAGAAAATAAAATAAAAGTCATCTAGGTTGGA 3907
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3908 AAGGAAGAAGTATAACTAAATAGAGATGGGAGACGATATGGTGGTTTTGTGCATAGTAATCCAAGGGAAAACTA 3981
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3982 TAGAAAATCCAAAGGCATGATTTATTAATAAATAAATTCAGCAAAGTTACAGGATACAGGATTAAATATGCAGA 4055
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4056 AATTGGTTATCTTTCAATATAGTATCAATGAATAAATCAAAAATGATGTTAAGAAAACAATTTAATTTTCAACA 4129
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4130 ATGGTCAAGCTTGGTGGCTTGTGCCTGTAATCCCAACACTTTGGGAGTCTGAGGCAGAAAGACTGCTAGAGGCC 4203
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4204 AGGAGACCAGCCTGGGAAACAGTGAGATCCCATCTCTACAAAAACAAACAAACAAAAAACAACAAGCAAACAAA 4277
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4278 AAACAGCTGGATGTGATGACACTCATCTGTCGTCTCAGCTACTCAGAGGCTGAGGTGTAAGGATGGCTTGAGCC 4351
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4352 CCAAAGTTCGAAGCTGCAATGAGCTATAACTGGGTCACTGCAATCCAGCCTGGATGACAGAGTTAGACCTTGAC 4425
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4426 TCAAAAAAAACAAAAAAGAAAAGAAAAAAATTGACAGCATCAGAAAGAGTAAAATACCAATATAATTGAGGGTC 4499
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4500 CAGAAATATTGATCACATTTATCATCAACTGACTTTTGAAAATAGTGCTAAGACAATTCAATGGGGGCAAAATA 4573
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4574 GTCTTTTTCATTAAATGATGCTTGGAAACATGGATATCCACATGCAAAATAATGAAATTGGACTCCTACCTCAT 4647
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4648 ATTGCATATAAAAATTAACTCAAAGTTGACCTAAGATCTAAATGTAAGAGCTAATATTGTAAGTATCTTCAAAG 4721
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4722 AAAACATGGCGTAAATCTTTCTGACTTTGAATTAGGCAATGATTTCTTAAATAAATGACACTAAAAACACAAGC 4795
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4796 AACAAAAGAAGAAAATAGGTAAATTAAAATTAAAACCATTTGTGTTTCCAAGGACAATATCAAGAAAGCAAAAA 4869
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4870 TACAACCCACAGAATGAGATAATTTTTTTTAAAATCATGTATTAGTTAAGGGAGGAATTTGTATTTAGAATATG 4943
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4944 TAAAGAACTGTTACAATAATAATTAAAAGGCATATAATTCAATTTTTAAAAATCAACAAGAGATCTGAATTAAC 5017
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5018 AGTTCTCCAAAGAAGATACACAAAAGGCCAATAAGCACATGAAAAGGTTCTCAACATCACTAGCCATCAGGGAA 5091
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5092 ATGCAAATGAGATCTACAATGAGATATCACTTAACACTCACTGGAATAGATATATAATCAAAGTGATAATATCA 5165
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5166 AGTGTTGGTGAGGATGCAGAGAAATTGGAACCCTCATGCACTGTTGGTGGATACCCACGTGATATAAAAACAAA 5239
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5240 TGTCTACACAAAAACTTGTGCACAGATGTTCTTTGCAGCATTATTTATAATAGCCCAAAATTGAAACAGCCCTA 5313
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5314 ATTTCTATCAACTAACAAGTGAATAAACAAAACGTGGCATATCCATACAAGGAATATTATTCAGCAATAAAAAA 5387
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5388 AGAGATGAAGTACTGATATGCACCACAACATGGAAAAACCTTGAAAACATATCAAGTGAAGAATGCCAGACATG 5461
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5462 AAAGGCCACATATTATATGATTTCATTTATATGAAATGTCCAGAACAGGCGAATATATATAGAGAGAAGGCAGA 5535
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5536 TTAGTGGTTGCTTAGGCTGAAGGGTTGGGGAGGACAAAGGGGTGACTGCTAATTAGTATGGGGTTTCTTTTTTG 5609
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5610 GGGTGATGTAAACGTTGTAAAGTTGATTGTGGTAATGGTGGCACAACTCTGAATATACTAAAAACCACTGAATT 5683
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5684 GTATACTTTGAATGTTTGAACTGTGTGGTATGTAGATTTTATCTCAAGTTGTTATAAAAAATTAAATTACAAAT 5757
Query 259 ---- 258
Sbjct 5758 GCAA 5761
