Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13766
- Subject:
- XR_001744516.1
- Aligned Length:
- 5896
- Identities:
- 222
- Gaps:
- 5653
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTCCCGGCCTTCCATCCCAGTTTCTTCTAGGAATTCGGAGCCTCCCCTGCAGCGACTCGGAAGATTCGAGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCGGGGGACAAGTCGGCGCCCCAGAGCGGACGAGTCACCAGGTGTCAAGATGCTGCAAGTACATAGGACTGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGGGCAGGCTGGGGGTCAGCCTCTCCAAGGGTCTTCACCACAAAGCTGTGTTGGCCGTCCGGAGGGAGGATGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAACGCCTGGGAGAGAAGGGCCCCGCTAGCTCCCAAGCACATCAAAGGCATCACCAATCTGGGATACAAGGTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGATACAGCCTTCGAATCGGCGGGCCATTCATGATAAGGACTATGTCAAAGCTGGTGGCATTCTTCAGGAGGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTCTGAAGCTTGTCTAATTTTAGGAGTTAAAAGACCTCCAGAGGAAAAATTAATGTCCAGGAAGACTTATGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTTTCTCCCACACAATAAAAGCTCAGGAGGCCAATATGGGCTTGTTGGATGAGATTCTAAAACAGGAAATTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCTTATTGATTATGAGAAAATGGTGGATCATAGAGGAGTACGGGTAGTGGCATTTGGACAGTGGGCTGGTGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCAGGAATGATCAACATTTTACATGGAATGGGTTTAAGGCTCCTTGCTTTGGGACATCACACACCTTTTATGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CATTGGCATGGCTCATAACTACAGGAATAGCAGTCAGGCTGTGCAAGCTGTCCGTGATGCTGGCTATGAAATAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTTGGGTTTGATGCCTAAGTCAATAGGACCCTTAACATTTGTGTTCACAGGAACTGGTAATGTTTCTAAGGGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCCCAAGCAATCTTTAATGAGCTACCTTGTGAATATGTGGAGCCCCATGAATTAAAAGAAGTTTCCCAAACTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGACCTCAGAAAAGTGTATGGGACGGTGTTAAGTCGTCATCATCATCTTGTCAGGAAAACAGATGCTGTGTATG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATCCTGCAGAGTATGACAAACATCCGGAGCGCTACATAAGTCGTTTTAATACTGATATTGCACCCTATACAACT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGCTTAATTAATGGAATCTACTGGGAACAAAACACTCCTCGCCTCCTAACCCGCCAAGATGCTCAGAGTCTCCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGCTCCGGGCAAGTTCTCACCTGCTGGTGTGGAAGGCTGCCCTGCATTACCACACAAACTCGTGGCAATATGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACATTTCAGCTGACACAGGAGGGTCTATAGAGTTTATGACTGAGTGTACAACAATAGAGCATCCCTTTTGCATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TATGATGCAGACCAGCATATTATTCATGACAGTGTTGAAGGCTCGGGGATCCTGATGTGTTCCATTGACAATTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCCGGCACAGCTCCCAATTGAAGCTACAGAATGCTTTGGAGACATGCTTTACCCTTATGTTGAAGAAATGATAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TATCAGACGCGACACAGCCTCTTGAAAGTCAGAATTTTTCTCCTGTGGTGAGAGATGCAGTGATTACATCCAAC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGTACATTACCTGATAAATATAAATATATCCAGACACTCCGGGAGAGCAGGGAACGTGCTCAGTCACTTTCAAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGGCACCAGGAGAAAGGTTTTGGTTCTTGGATCTGGCTACATATCTGAGCCTGTATTAGAATATTTATCAAGAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATGGCAATATAGAAATAACAGTAGGATCTGACATGAAGAATCAAATTGAACAGTTAGGCAAGAAATATAATATT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AATCCTGTTAGCATGGACATTTGTAAACAAGAAGAGAAGCTGGGCTTCTTGGTGGCAAAACAGGATCTTGTCAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAGCTTGTTGCCTTATGTATTGCACCCTCTTGTGGCCAAGGCCTGCATCACAAACAAAGTTAACATGGTCACTG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CAAGCTACATCACACCAGCACTAAAAGAATTGGAAAAGAGTTTTCCTTTTTCCTCTTTCCACCTGCTGCAGTGT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GGAAGATGCTGGCATCACAATCATTGGTGAATTGGGATTGGACCCTGGTCTGGATCACATGTTAGCAATGGAAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CAATAGATAAAGCCAAGGAAGTGGGAGCCACGATTGAATCATATATTTCCTACTGTGGTGGGCTTCCAGCCCCT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GAACATTCAAACAATCCATTGAGATATAAATTTAGCTGGAGTCCAGTGGGAGTTTTGATGAATGTAATGCAGTC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGCCACCTATCTGCTCGATGGAAAGGTTGTGAATGTTGCAGGAGGCATCTCCTTTCTTGATGCCGTTACGTCCA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TGGATTTTTTTCCAGGATTAAATTTGGAAGGCTATCCTAACAGAGACAGTACGAAATATGCTGAGATTTATGGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ATTTCTTCTGCTCACACTTTGTTGCGGGGGACACTGAGATATAAGGGATATATGAAAGCTTTGAATGGATTTGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AAAATTAGGTCTTATAAACAGAGAAGCGCTTCCTGCCTTTAGACCTGAGGCCAACCCTCTCACCTGGAAACAAC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TCCTCTGTGACCTAGTTGGGATTTCACCCTCCTCTGAGCATGATGTGTTGAAGGAAGCTGTTCTTAAGAAACTA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GGAGGAGACAATACCCAGTTGGAGGCTGCTGAATGGTTGGGCTTACTTGGGGATGAACAAGTTCCTCAGGCAGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GTCCATTCTGGATGCCCTCTCCAAGCATTTGGTCATGAAGCTTTCCTATGGTCCTGAAGAAAAAGATATGATTG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TGATGAGAGACAGCTTTGGAATCAGACATCCTTCTGGACATTTAGAACATAAAACGATTGATCTTGTGGCTTAT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GGGGACATCAATGGCTTTTCAGCCATGGCTAAAACCGTGGGGTTACCCACCGCCATGGCAGCCAAAATGTTGCT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TGATGGTGAAATTGGAGCCAAAGGCCTAATGGGGCCCTTTTCAAAGGAGATCTATGGACCAATATTGGAGCGAA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTAAAGCAGAAGGCATTATATATACTACACAGAGTACAATTAAACCATAATTGGGAATTATATTTTGTTTTTTT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CTTCCCAGGCAATACACCTCTGAACATGTGTGTGATAAATGGGTTTGCTAATGTGCTGTTTTAAAGTATAAAGC 3034
Query 1 --------------------------------------------------------ATGG--------GGGGC- 9
|||| ||..|
Sbjct 3035 ATAATATGTTTTGGTTAACACAATGTACTTTTTGAACTATAAATCTTTATTTTAATATGGAAATGTTTGGAACA 3108
Query 10 GGAG-TG--AGCGGTGAACACACTGAACAGAATCTGAGATTTAATAAGCCAA-----------ATCAACA---A 66
|||| || ||| |||| |||||| ||..||||||||..|.| ||.||.| |
Sbjct 3109 GGAGATGCAAGC--------CACT-AACAGA----GAACTTTAATAATTCTACCCTGTATTTTATAAATACGTA 3169
Query 67 TGTGGGAAG----------------------------------------TTCGTTTTGTTTTTT---------- 90
||| |.||| ||| |||||||||||
Sbjct 3170 TGT-GAAAGTGATGATCATGCTATTTGTTAATTTATTGTGCCACTTTTTTTC-TTTTGTTTTTTTTTTGTTGTT 3241
Query 91 ----TTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGCAGTGCAATGGCACGATCTCGGCTCACTGCAAG 160
||||||||||.||||||||||||||||||||||||||.||||||.||||.||||||||||||||||||||
Sbjct 3242 GTTGTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAG 3315
Query 161 CTCCGCCTCTCAGGTTCACGCCATTCTCCTGCCTCAGCCTTCCCAGTAGCTGGGACTACAGGCGCCCGCCACCA 234
|||||||||...||||||||||||||||||||||||||||.||.|||||||||||||||||||.||||||||||
Sbjct 3316 CTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACCA 3389
Query 235 TGCCCGGCT-AATTTTTTGTATTTT------------------------------------------------- 258
.|||||||| |||||||||||||||
Sbjct 3390 CGCCCGGCTAAATTTTTTGTATTTTTCAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGTCCACTTTTTTC 3463
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3464 TTAAATGAACATATTGTCTTATAACCAGCAAATGAAGTTTTACTTTTTTAGTCAGAAAAAATTTCGTCATAAAG 3537
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3538 CTATATTTTTATATTTTTAAAATTGATACAGTTAGATACCTTCAGATTACCTAAGTTAAGTTTTTGCCAAAATG 3611
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3612 CTATTTTATGCCCTTTTTGTAAAGTTATGATTTATTTTGTAAATATAGTTCCTTATAGTTTTCTCTTGAGTGTT 3685
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3686 TGGACATGAGAATAGATAAGATTAAATTACAATTTACAAGATCACTTCATTAGGCACAGGAAAAGTATTTAACA 3759
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3760 AAATTCAACACCCTTTCACAATAAAAAATAAAAAATAAAAAACCCTCAACAAACTAGGAATAGAAGGAAACTTC 3833
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3834 CTCAACCTGATAAAGGGCATCTATGAAGAACCCATGGTTAGCATCATACTTAATGGTGAAGGACTGGATTATTT 3907
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3908 CCCCCTGAGATCAGAAACAAGACAAGGATGTCTGCTTTGGCCATTTCTATTCAACTTGTACTGGACAGTCAAGA 3981
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3982 AAGGGCAATTAGGCAAGAAAATAAAATAAAAGTCATCTAGGTTGGAAAGGAAGAAGTATAACTAAATAGAGATG 4055
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4056 GGAGACGATATGGTGGTTTTGTGCATAGTAATCCAAGGGAAAACTATAGAAAATCCAAAGGCATGATTTATTAA 4129
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4130 TAAATAAATTCAGCAAAGTTACAGGATACAGGATTAAATATGCAGAAATTGGTTATCTTTCAATATAGTATCAA 4203
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4204 TGAATAAATCAAAAATGATGTTAAGAAAACAATTTAATTTTCAACAATGGTCAAGCTTGGTGGCTTGTGCCTGT 4277
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4278 AATCCCAACACTTTGGGAGTCTGAGGCAGAAAGACTGCTAGAGGCCAGGAGACCAGCCTGGGAAACAGTGAGAT 4351
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4352 CCCATCTCTACAAAAACAAACAAACAAAAAACAACAAGCAAACAAAAAACAGCTGGATGTGATGACACTCATCT 4425
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4426 GTCGTCTCAGCTACTCAGAGGCTGAGGTGTAAGGATGGCTTGAGCCCCAAAGTTCGAAGCTGCAATGAGCTATA 4499
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4500 ACTGGGTCACTGCAATCCAGCCTGGATGACAGAGTTAGACCTTGACTCAAAAAAAACAAAAAAGAAAAGAAAAA 4573
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4574 AATTGACAGCATCAGAAAGAGTAAAATACCAATATAATTGAGGGTCCAGAAATATTGATCACATTTATCATCAA 4647
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4648 CTGACTTTTGAAAATAGTGCTAAGACAATTCAATGGGGGCAAAATAGTCTTTTTCATTAAATGATGCTTGGAAA 4721
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4722 CATGGATATCCACATGCAAAATAATGAAATTGGACTCCTACCTCATATTGCATATAAAAATTAACTCAAAGTTG 4795
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4796 ACCTAAGATCTAAATGTAAGAGCTAATATTGTAAGTATCTTCAAAGAAAACATGGCGTAAATCTTTCTGACTTT 4869
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4870 GAATTAGGCAATGATTTCTTAAATAAATGACACTAAAAACACAAGCAACAAAAGAAGAAAATAGGTAAATTAAA 4943
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4944 ATTAAAACCATTTGTGTTTCCAAGGACAATATCAAGAAAGCAAAAATACAACCCACAGAATGAGATAATTTTTT 5017
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5018 TTAAAATCATGTATTAGTTAAGGGAGGAATTTGTATTTAGAATATGTAAAGAACTGTTACAATAATAATTAAAA 5091
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5092 GGCATATAATTCAATTTTTAAAAATCAACAAGAGATCTGAATTAACAGTTCTCCAAAGAAGATACACAAAAGGC 5165
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5166 CAATAAGCACATGAAAAGGTTCTCAACATCACTAGCCATCAGGGAAATGCAAATGAGATCTACAATGAGATATC 5239
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5240 ACTTAACACTCACTGGAATAGATATATAATCAAAGTGATAATATCAAGTGTTGGTGAGGATGCAGAGAAATTGG 5313
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5314 AACCCTCATGCACTGTTGGTGGATACCCACGTGATATAAAAACAAATGTCTACACAAAAACTTGTGCACAGATG 5387
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5388 TTCTTTGCAGCATTATTTATAATAGCCCAAAATTGAAACAGCCCTAATTTCTATCAACTAACAAGTGAATAAAC 5461
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5462 AAAACGTGGCATATCCATACAAGGAATATTATTCAGCAATAAAAAAAGAGATGAAGTACTGATATGCACCACAA 5535
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5536 CATGGAAAAACCTTGAAAACATATCAAGTGAAGAATGCCAGACATGAAAGGCCACATATTATATGATTTCATTT 5609
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5610 ATATGAAATGTCCAGAACAGGCGAATATATATAGAGAGAAGGCAGATTAGTGGTTGCTTAGGCTGAAGGGTTGG 5683
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5684 GGAGGACAAAGGGGTGACTGCTAATTAGTATGGGGTTTCTTTTTTGGGGTGATGTAAACGTTGTAAAGTTGATT 5757
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5758 GTGGTAATGGTGGCACAACTCTGAATATACTAAAAACCACTGAATTGTATACTTTGAATGTTTGAACTGTGTGG 5831
Query 259 -------------------------------------------------- 258
Sbjct 5832 TATGTAGATTTTATCTCAAGTTGTTATAAAAAATTAAATTACAAATGCAA 5881
