Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13766
- Subject:
- XR_001744517.1
- Aligned Length:
- 6000
- Identities:
- 222
- Gaps:
- 5757
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTCCCGGCCTTCCATCCCAGTTTCTTCTAGGAATTCGGAGCCTCCCCTGCAGCGACTCGGAAGATTCGAGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCGGGGGACAAGTCGGCGCCCCAGAGCGGACGAGTCACCAGGTGTCAAGATGCTGCAAGTACATAGGACTGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGGGCAGGCTGGGGGTCAGCCTCTCCAAGGGTCTTCACCACAAAGCTGTGTTGGCCGTCCGGAGGGAGGATGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAACGCCTGGGAGAGAAGGGCCCCGCTAGCTCCCAAGCACATCAAAGGCATCACCAATCTGGGATACAAGGTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGATACAGCCTTCGAATCGGCGGGCCATTCATGATAAGGACTATGTCAAAGCTGGTGGCATTCTTCAGGAGGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTCTGAAGCTTGTCTAATTTTAGGAGTTAAAAGACCTCCAGAGGAAAAATTAATGTCCAGGAAGACTTATGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTTTCTCCCACACAATAAAAGCTCAGGAGGCCAATATGGGCTTGTTGGATGAGATTCTAAAACAGGAAATTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCTTATTGATTATGAGAAAATGGTGGATCATAGAGGAGTACGGGTAGTGGCATTTGGACAGTGGGCTGGTGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCAGGAATGATCAACATTTTACATGGAATGGGTTTAAGGCTCCTTGCTTTGGGACATCACACACCTTTTATGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CATTGGCATGGCTCATAACTACAGGAATAGCAGTCAGGCTGTGCAAGCTGTCCGTGATGCTGGCTATGAAATAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTTGGGTTTGATGCCTAAGTCAATAGGACCCTTAACATTTGTGTTCACAGGAACTGGTAATGTTTCTAAGGGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCCCAAGCAATCTTTAATGAGCTACCTTGTGAATATGTGGAGCCCCATGAATTAAAAGAAGTTTCCCAAACTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGACCTCAGAAAAGTGTATGGGACGGTGTTAAGTCGTCATCATCATCTTGTCAGGAAAACAGATGCTGTGTATG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATCCTGCAGAGTATGACAAACATCCGGAGCGCTACATAAGTCGTTTTAATACTGATATTGCACCCTATACAACT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGCTTAATTAATGGAATCTACTGGGAACAAAACACTCCTCGCCTCCTAACCCGCCAAGATGCTCAGAGTCTCCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGCTCCGGGCAAGTTCTCACCTGCTGGTGTGGAAGGCTGCCCTGCATTACCACACAAACTCGTGGCAATATGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACATTTCAGCTGACACAGGAGGGTCTATAGAGTTTATGACTGAGTGTACAACAATAGAGCATCCCTTTTGCATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TATGATGCAGACCAGCATATTATTCATGACAGTGTTGAAGGCTCGGGGATCCTGATGTGTTCCATTGACAATTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCCGGCACAGCTCCCAATTGAAGCTACAGAATGCTTTGGAGACATGCTTTACCCTTATGTTGAAGAAATGATAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TATCAGACGCGACACAGCCTCTTGAAAGTCAGAATTTTTCTCCTGTGGTGAGAGATGCAGTGATTACATCCAAC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGTACATTACCTGATAAATATAAATATATCCAGACACTCCGGGAGAGCAGGGAACGTGCTCAGTCACTTTCAAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGGCACCAGGAGAAAGGTTTTGGTTCTTGGATCTGGCTACATATCTGAGCCTGTATTAGAATATTTATCAAGAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATGGCAATATAGAAATAACAGTAGGATCTGACATGAAGAATCAAATTGAACAGTTAGGCAAGAAATATAATATT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AATCCTGTTAGCATGGACATTTGTAAACAAGAAGAGAAGCTGGGCTTCTTGGTGGCAAAACAGGATCTTGTCAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAGCTTGTTGCCTTATGTATTGCACCCTCTTGTGGCCAAGGCCTGCATCACAAACAAAGTTAACATGGTCACTG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CAAGCTACATCACACCAGCACTAAAAGAATTGGAAAAGAGTTTTCCTTTTTCCTCTTTCCACCTGCTGCAGTGT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GGAAGATGCTGGCATCACAATCATTGGTGAATTGGGATTGGACCCTGGTCTGGATCACATGTTAGCAATGGAAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CAATAGATAAAGCCAAGGAAGTGGGAGCCACGATTGAATCATATATTTCCTACTGTGGTGGGCTTCCAGCCCCT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GAACATTCAAACAATCCATTGAGATATAAATTTAGCTGGAGTCCAGTGGGAGTTTTGATGAATGTAATGCAGTC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGCCACCTATCTGCTCGATGGAAAGGTTGTGAATGTTGCAGGAGGCATCTCCTTTCTTGATGCCGTTACGTCCA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TGGATTTTTTTCCAGGATTAAATTTGGAAGGCTATCCTAACAGAGACAGTACGAAATATGCTGAGATTTATGGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ATTTCTTCTGCTCACACTTTGTTGCGGGGGACACTGAGATATAAGGGATTGGAATGCTGAATAATGGATTGGAA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TGTTGAATAATGTTGAATACCTTCCTATGGTATCCTCCCTAACTCCTTCCCCTTGAACCACCCAGCCCCATCTA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGGATATATGAAAGCTTTGAATGGATTTGTAAAATTAGGTCTTATAAACAGAGAAGCGCTTCCTGCCTTTAGAC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CTGAGGCCAACCCTCTCACCTGGAAACAACTCCTCTGTGACCTAGTTGGGATTTCACCCTCCTCTGAGCATGAT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GTGTTGAAGGAAGCTGTTCTTAAGAAACTAGGAGGAGACAATACCCAGTTGGAGGCTGCTGAATGGTTGGGCTT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ACTTGGGGATGAACAAGTTCCTCAGGCAGAGTCCATTCTGGATGCCCTCTCCAAGCATTTGGTCATGAAGCTTT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CCTATGGTCCTGAAGAAAAAGATATGATTGTGATGAGAGACAGCTTTGGAATCAGACATCCTTCTGGACATTTA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GAACATAAAACGATTGATCTTGTGGCTTATGGGGACATCAATGGCTTTTCAGCCATGGCTAAAACCGTGGGGTT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ACCCACCGCCATGGCAGCCAAAATGTTGCTTGATGGTGAAATTGGAGCCAAAGGCCTAATGGGGCCCTTTTCAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AGGAGATCTATGGACCAATATTGGAGCGAATTAAAGCAGAAGGCATTATATATACTACACAGAGTACAATTAAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CCATAATTGGGAATTATATTTTGTTTTTTTCTTCCCAGGCAATACACCTCTGAACATGTGTGTGATAAATGGGT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TTGCTAATGTGCTGTTTTAAAGTATAAAGCATAATATGTTTTGGTTAACACAATGTACTTTTTGAACTATAAAT 3182
Query 1 ------------ATGG--------GGGGC-GGAG-TG--AGCGGTGAACACACTGAACAGAATCTGAGATTTAA 50
|||| ||..| |||| || ||| |||| |||||| ||..|||||
Sbjct 3183 CTTTATTTTAATATGGAAATGTTTGGAACAGGAGATGCAAGC--------CACT-AACAGA----GAACTTTAA 3243
Query 51 TAAGCCAA-----------ATCAACA---ATGTGGGAAG----------------------------------- 75
|||..|.| ||.||.| |||| |.|||
Sbjct 3244 TAATTCTACCCTGTATTTTATAAATACGTATGT-GAAAGTGATGATCATGCTATTTGTTAATTTATTGTGCCAC 3316
Query 76 -----TTCGTTTTGTTTTTT--------------TTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGCAG 130
||| ||||||||||| ||||||||||.||||||||||||||||||||||||||.||
Sbjct 3317 TTTTTTTC-TTTTGTTTTTTTTTTGTTGTTGTTGTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAG 3389
Query 131 TGCAATGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCTCAGGTTCACGCCATTCTCCTGCCTCAGCCTTCCC 204
||||.||||.|||||||||||||||||||||||||||||...||||||||||||||||||||||||||||.||.
Sbjct 3390 TGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCA 3463
Query 205 AGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCT-AATTTTTTGTATTTT------------------- 258
|||||||||||||||||||.||||||||||.|||||||| |||||||||||||||
Sbjct 3464 AGTAGCTGGGACTACAGGCACCCGCCACCACGCCCGGCTAAATTTTTTGTATTTTTCAGTAGAGACGGGGTTTC 3537
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3538 ACCATGTTAGCCAGGATGTCCACTTTTTTCTTAAATGAACATATTGTCTTATAACCAGCAAATGAAGTTTTACT 3611
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3612 TTTTTAGTCAGAAAAAATTTCGTCATAAAGCTATATTTTTATATTTTTAAAATTGATACAGTTAGATACCTTCA 3685
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3686 GATTACCTAAGTTAAGTTTTTGCCAAAATGCTATTTTATGCCCTTTTTGTAAAGTTATGATTTATTTTGTAAAT 3759
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3760 ATAGTTCCTTATAGTTTTCTCTTGAGTGTTTGGACATGAGAATAGATAAGATTAAATTACAATTTACAAGATCA 3833
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3834 CTTCATTAGGCACAGGAAAAGTATTTAACAAAATTCAACACCCTTTCACAATAAAAAATAAAAAATAAAAAACC 3907
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3908 CTCAACAAACTAGGAATAGAAGGAAACTTCCTCAACCTGATAAAGGGCATCTATGAAGAACCCATGGTTAGCAT 3981
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3982 CATACTTAATGGTGAAGGACTGGATTATTTCCCCCTGAGATCAGAAACAAGACAAGGATGTCTGCTTTGGCCAT 4055
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4056 TTCTATTCAACTTGTACTGGACAGTCAAGAAAGGGCAATTAGGCAAGAAAATAAAATAAAAGTCATCTAGGTTG 4129
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4130 GAAAGGAAGAAGTATAACTAAATAGAGATGGGAGACGATATGGTGGTTTTGTGCATAGTAATCCAAGGGAAAAC 4203
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4204 TATAGAAAATCCAAAGGCATGATTTATTAATAAATAAATTCAGCAAAGTTACAGGATACAGGATTAAATATGCA 4277
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4278 GAAATTGGTTATCTTTCAATATAGTATCAATGAATAAATCAAAAATGATGTTAAGAAAACAATTTAATTTTCAA 4351
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4352 CAATGGTCAAGCTTGGTGGCTTGTGCCTGTAATCCCAACACTTTGGGAGTCTGAGGCAGAAAGACTGCTAGAGG 4425
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4426 CCAGGAGACCAGCCTGGGAAACAGTGAGATCCCATCTCTACAAAAACAAACAAACAAAAAACAACAAGCAAACA 4499
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4500 AAAAACAGCTGGATGTGATGACACTCATCTGTCGTCTCAGCTACTCAGAGGCTGAGGTGTAAGGATGGCTTGAG 4573
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4574 CCCCAAAGTTCGAAGCTGCAATGAGCTATAACTGGGTCACTGCAATCCAGCCTGGATGACAGAGTTAGACCTTG 4647
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4648 ACTCAAAAAAAACAAAAAAGAAAAGAAAAAAATTGACAGCATCAGAAAGAGTAAAATACCAATATAATTGAGGG 4721
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4722 TCCAGAAATATTGATCACATTTATCATCAACTGACTTTTGAAAATAGTGCTAAGACAATTCAATGGGGGCAAAA 4795
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4796 TAGTCTTTTTCATTAAATGATGCTTGGAAACATGGATATCCACATGCAAAATAATGAAATTGGACTCCTACCTC 4869
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4870 ATATTGCATATAAAAATTAACTCAAAGTTGACCTAAGATCTAAATGTAAGAGCTAATATTGTAAGTATCTTCAA 4943
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4944 AGAAAACATGGCGTAAATCTTTCTGACTTTGAATTAGGCAATGATTTCTTAAATAAATGACACTAAAAACACAA 5017
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5018 GCAACAAAAGAAGAAAATAGGTAAATTAAAATTAAAACCATTTGTGTTTCCAAGGACAATATCAAGAAAGCAAA 5091
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5092 AATACAACCCACAGAATGAGATAATTTTTTTTAAAATCATGTATTAGTTAAGGGAGGAATTTGTATTTAGAATA 5165
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5166 TGTAAAGAACTGTTACAATAATAATTAAAAGGCATATAATTCAATTTTTAAAAATCAACAAGAGATCTGAATTA 5239
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5240 ACAGTTCTCCAAAGAAGATACACAAAAGGCCAATAAGCACATGAAAAGGTTCTCAACATCACTAGCCATCAGGG 5313
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5314 AAATGCAAATGAGATCTACAATGAGATATCACTTAACACTCACTGGAATAGATATATAATCAAAGTGATAATAT 5387
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5388 CAAGTGTTGGTGAGGATGCAGAGAAATTGGAACCCTCATGCACTGTTGGTGGATACCCACGTGATATAAAAACA 5461
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5462 AATGTCTACACAAAAACTTGTGCACAGATGTTCTTTGCAGCATTATTTATAATAGCCCAAAATTGAAACAGCCC 5535
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5536 TAATTTCTATCAACTAACAAGTGAATAAACAAAACGTGGCATATCCATACAAGGAATATTATTCAGCAATAAAA 5609
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5610 AAAGAGATGAAGTACTGATATGCACCACAACATGGAAAAACCTTGAAAACATATCAAGTGAAGAATGCCAGACA 5683
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5684 TGAAAGGCCACATATTATATGATTTCATTTATATGAAATGTCCAGAACAGGCGAATATATATAGAGAGAAGGCA 5757
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5758 GATTAGTGGTTGCTTAGGCTGAAGGGTTGGGGAGGACAAAGGGGTGACTGCTAATTAGTATGGGGTTTCTTTTT 5831
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5832 TGGGGTGATGTAAACGTTGTAAAGTTGATTGTGGTAATGGTGGCACAACTCTGAATATACTAAAAACCACTGAA 5905
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5906 TTGTATACTTTGAATGTTTGAACTGTGTGGTATGTAGATTTTATCTCAAGTTGTTATAAAAAATTAAATTACAA 5979
Query 259 ------ 258
Sbjct 5980 ATGCAA 5985
