Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13766
- Subject:
- XR_001744519.1
- Aligned Length:
- 5797
- Identities:
- 222
- Gaps:
- 5554
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTCCCGGCCTTCCATCCCAGTTTCTTCTAGGAATTCGGAGCCTCCCCTGCAGCGACTCGGAAGATTCGAGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCGGGGGACAAGTCGGCGCCCCAGAGCGGACGAGTCACCAGGTGTCAAGATGCTGCAAGTACATAGGACTGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGGGCAGGCTGGGGGTCAGCCTCTCCAAGGGTCTTCACCACAAAGCTGTGTTGGCCGTCCGGAGGGAGGATGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAACGCCTGGGAGAGAAGGGCCCCGCTAGCTCCCAAGCACATCAAAGGCATCACCAATCTGGGATACAAGGTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGATACAGCCTTCGAATCGGCGGGCCATTCATGATAAGGACTATGTCAAAGCTGGTGGCATTCTTCAGGAGGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTCTGAAGCTTGTCTAATTTTAGGAGTTAAAAGACCTCCAGAGGAAAAATTAATGTCCAGGAAGACTTATGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTTTCTCCCACACAATAAAAGCTCAGGAGGCCAATATGGGCTTGTTGGATGAGATTCTAAAACAGGAAATTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCTTATTGATTATGAGAAAATGGTGGATCATAGAGGAGTACGGGTAGTGGCATTTGGACAGTGGGCTGGTGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCAGGAATGATCAACATTTTACATGGAATGGGTTTAAGGCTCCTTGCTTTGGGACATCACACACCTTTTATGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CATTGGCATGGCTCATAACTACAGGAATAGCAGTCAGGCTGTGCAAGCTGTCCGTGATGCTGGCTATGAAATAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTTGGGTTTGATGCCTAAGTCAATAGGACCCTTAACATTTGTGTTCACAGGAACTGGTAATGTTTCTAAGGGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCCCAAGCAATCTTTAATGAGCTACCTTGTGAATATGTGGAGCCCCATGAATTAAAAGAAGTTTCCCAAACTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGACCTCAGAAAAGTGTATGGGACGGTGTTAAGTCGTCATCATCATCTTGTCAGGAAAACAGATGCTGTGTATG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATCCTGCAGAGTATGACAAACATCCGGAGCGCTACATAAGTCGTTTTAATACTGATATTGCACCCTATACAACT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGCTTAATTAATGGAATCTACTGGGAACAAAACACTCCTCGCCTCCTAACCCGCCAAGATGCTCAGAGTCTCCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGCTCCGGGCAAGTTCTCACCTGCTGGTGTGGAAGGCTGCCCTGCATTACCACACAAACTCGTGGCAATATGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACATTTCAGCTGACACAGGAGGGTCTATAGAGTTTATGACTGAGTGTACAACAATAGAGCATCCCTTTTGCATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TATGATGCAGACCAGCATATTATTCATGACAGTGTTGAAGGCTCGGGGATCCTGATGTGTTCCATTGACAATTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCCGGCACAGCTCCCAATTGAAGCTACAGAATGCTTTGGAGACATGCTTTACCCTTATGTTGAAGAAATGATAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TATCAGACGCGACACAGCCTCTTGAAAGTCAGAATTTTTCTCCTGTGGTGAGAGATGGAACGTGCTCAGTCACT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTCAATGGGCACCAGGAGAAAGGTTTTGGTTCTTGGATCTGGCTACATATCTGAGCCTGTATTAGAATATTTAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CAAGAGATGGCAATATAGAAATAACAGTAGGATCTGACATGAAGAATCAAATTGAACAGTTAGGCAAGAAATAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AATATTAATCCTGTTAGCATGGACATTTGTAAACAAGAAGAGAAGCTGGGCTTCTTGGTGGCAAAACAGGATCT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TGTCATCAGCTTGTTGCCTTATGTATTGCACCCTCTTGTGGCCAAGGCCTGCATCACAAACAAAGTTAACATGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TCACTGCAAGCTACATCACACCAGCACTAAAAGAATTGGAAAAGAGTGTGGAAGATGCTGGCATCACAATCATT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGTGAATTGGGATTGGACCCTGGTCTGGATCACATGTTAGCAATGGAAACAATAGATAAAGCCAAGGAAGTGGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AGCCACGATTGAATCATATATTTCCTACTGTGGTGGGCTTCCAGCCCCTGAACATTCAAACAATCCATTGAGAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATAAATTTAGCTGGAGTCCAGTGGGAGTTTTGATGAATGTAATGCAGTCTGCCACCTATCTGCTCGATGGAAAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTTGTGAATGTTGCAGGAGGCATCTCCTTTCTTGATGCCGTTACGTCCATGGATTTTTTTCCAGGATTAAATTT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGAAGGCTATCCTAACAGAGACAGTACGAAATATGCTGAGATTTATGGCATTTCTTCTGCTCACACTTTGTTGC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GGGGGACACTGAGATATAAGGGATATATGAAAGCTTTGAATGGATTTGTAAAATTAGGTCTTATAAACAGAGAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GCGCTTCCTGCCTTTAGACCTGAGGCCAACCCTCTCACCTGGAAACAACTCCTCTGTGACCTAGTTGGGATTTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACCCTCCTCTGAGCATGATGTGTTGAAGGAAGCTGTTCTTAAGAAACTAGGAGGAGACAATACCCAGTTGGAGG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CTGCTGAATGGTTGGGCTTACTTGGGGATGAACAAGTTCCTCAGGCAGAGTCCATTCTGGATGCCCTCTCCAAG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CATTTGGTCATGAAGCTTTCCTATGGTCCTGAAGAAAAAGATATGATTGTGATGAGAGACAGCTTTGGAATCAG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ACATCCTTCTGGACATTTAGAACATAAAACGATTGATCTTGTGGCTTATGGGGACATCAATGGCTTTTCAGCCA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TGGCTAAAACCGTGGGGTTACCCACCGCCATGGCAGCCAAAATGTTGCTTGATGGTGAAATTGGAGCCAAAGGC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTAATGGGGCCCTTTTCAAAGGAGATCTATGGACCAATATTGGAGCGAATTAAAGCAGAAGGCATTATATATAC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TACACAGAGTACAATTAAACCATAATTGGGAATTATATTTTGTTTTTTTCTTCCCAGGCAATACACCTCTGAAC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ATGTGTGTGATAAATGGGTTTGCTAATGTGCTGTTTTAAAGTATAAAGCATAATATGTTTTGGTTAACACAATG 2960
Query 1 -------------------------------ATGG--------GGGGC-GGAG-TG--AGCGGTGAACACACTG 31
|||| ||..| |||| || ||| ||||
Sbjct 2961 TACTTTTTGAACTATAAATCTTTATTTTAATATGGAAATGTTTGGAACAGGAGATGCAAGC--------CACT- 3025
Query 32 AACAGAATCTGAGATTTAATAAGCCAA-----------ATCAACA---ATGTGGGAAG---------------- 75
|||||| ||..||||||||..|.| ||.||.| |||| |.|||
Sbjct 3026 AACAGA----GAACTTTAATAATTCTACCCTGTATTTTATAAATACGTATGT-GAAAGTGATGATCATGCTATT 3094
Query 76 ------------------------TTCGTTTTGTTTTTT--------------TTTTTTGAGACGGAGTCTCGC 111
||| ||||||||||| ||||||||||.||||||||||
Sbjct 3095 TGTTAATTTATTGTGCCACTTTTTTTC-TTTTGTTTTTTTTTTGTTGTTGTTGTTTTTTGAGATGGAGTCTCGC 3167
Query 112 TCTGTCACCCAGGCTGCAGTGCAATGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCTCAGGTTCACGCCATT 185
||||||||||||||||.||||||.||||.|||||||||||||||||||||||||||||...|||||||||||||
Sbjct 3168 TCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATT 3241
Query 186 CTCCTGCCTCAGCCTTCCCAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCT-AATTTTTTGTATTTT 258
|||||||||||||||.||.|||||||||||||||||||.||||||||||.|||||||| |||||||||||||||
Sbjct 3242 CTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACCACGCCCGGCTAAATTTTTTGTATTTT 3315
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3316 TCAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGTCCACTTTTTTCTTAAATGAACATATTGTCTTATAAC 3389
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3390 CAGCAAATGAAGTTTTACTTTTTTAGTCAGAAAAAATTTCGTCATAAAGCTATATTTTTATATTTTTAAAATTG 3463
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3464 ATACAGTTAGATACCTTCAGATTACCTAAGTTAAGTTTTTGCCAAAATGCTATTTTATGCCCTTTTTGTAAAGT 3537
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3538 TATGATTTATTTTGTAAATATAGTTCCTTATAGTTTTCTCTTGAGTGTTTGGACATGAGAATAGATAAGATTAA 3611
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3612 ATTACAATTTACAAGATCACTTCATTAGGCACAGGAAAAGTATTTAACAAAATTCAACACCCTTTCACAATAAA 3685
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3686 AAATAAAAAATAAAAAACCCTCAACAAACTAGGAATAGAAGGAAACTTCCTCAACCTGATAAAGGGCATCTATG 3759
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3760 AAGAACCCATGGTTAGCATCATACTTAATGGTGAAGGACTGGATTATTTCCCCCTGAGATCAGAAACAAGACAA 3833
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3834 GGATGTCTGCTTTGGCCATTTCTATTCAACTTGTACTGGACAGTCAAGAAAGGGCAATTAGGCAAGAAAATAAA 3907
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3908 ATAAAAGTCATCTAGGTTGGAAAGGAAGAAGTATAACTAAATAGAGATGGGAGACGATATGGTGGTTTTGTGCA 3981
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3982 TAGTAATCCAAGGGAAAACTATAGAAAATCCAAAGGCATGATTTATTAATAAATAAATTCAGCAAAGTTACAGG 4055
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4056 ATACAGGATTAAATATGCAGAAATTGGTTATCTTTCAATATAGTATCAATGAATAAATCAAAAATGATGTTAAG 4129
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4130 AAAACAATTTAATTTTCAACAATGGTCAAGCTTGGTGGCTTGTGCCTGTAATCCCAACACTTTGGGAGTCTGAG 4203
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4204 GCAGAAAGACTGCTAGAGGCCAGGAGACCAGCCTGGGAAACAGTGAGATCCCATCTCTACAAAAACAAACAAAC 4277
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4278 AAAAAACAACAAGCAAACAAAAAACAGCTGGATGTGATGACACTCATCTGTCGTCTCAGCTACTCAGAGGCTGA 4351
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4352 GGTGTAAGGATGGCTTGAGCCCCAAAGTTCGAAGCTGCAATGAGCTATAACTGGGTCACTGCAATCCAGCCTGG 4425
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4426 ATGACAGAGTTAGACCTTGACTCAAAAAAAACAAAAAAGAAAAGAAAAAAATTGACAGCATCAGAAAGAGTAAA 4499
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4500 ATACCAATATAATTGAGGGTCCAGAAATATTGATCACATTTATCATCAACTGACTTTTGAAAATAGTGCTAAGA 4573
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4574 CAATTCAATGGGGGCAAAATAGTCTTTTTCATTAAATGATGCTTGGAAACATGGATATCCACATGCAAAATAAT 4647
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4648 GAAATTGGACTCCTACCTCATATTGCATATAAAAATTAACTCAAAGTTGACCTAAGATCTAAATGTAAGAGCTA 4721
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4722 ATATTGTAAGTATCTTCAAAGAAAACATGGCGTAAATCTTTCTGACTTTGAATTAGGCAATGATTTCTTAAATA 4795
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4796 AATGACACTAAAAACACAAGCAACAAAAGAAGAAAATAGGTAAATTAAAATTAAAACCATTTGTGTTTCCAAGG 4869
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4870 ACAATATCAAGAAAGCAAAAATACAACCCACAGAATGAGATAATTTTTTTTAAAATCATGTATTAGTTAAGGGA 4943
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4944 GGAATTTGTATTTAGAATATGTAAAGAACTGTTACAATAATAATTAAAAGGCATATAATTCAATTTTTAAAAAT 5017
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5018 CAACAAGAGATCTGAATTAACAGTTCTCCAAAGAAGATACACAAAAGGCCAATAAGCACATGAAAAGGTTCTCA 5091
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5092 ACATCACTAGCCATCAGGGAAATGCAAATGAGATCTACAATGAGATATCACTTAACACTCACTGGAATAGATAT 5165
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5166 ATAATCAAAGTGATAATATCAAGTGTTGGTGAGGATGCAGAGAAATTGGAACCCTCATGCACTGTTGGTGGATA 5239
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5240 CCCACGTGATATAAAAACAAATGTCTACACAAAAACTTGTGCACAGATGTTCTTTGCAGCATTATTTATAATAG 5313
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5314 CCCAAAATTGAAACAGCCCTAATTTCTATCAACTAACAAGTGAATAAACAAAACGTGGCATATCCATACAAGGA 5387
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5388 ATATTATTCAGCAATAAAAAAAGAGATGAAGTACTGATATGCACCACAACATGGAAAAACCTTGAAAACATATC 5461
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5462 AAGTGAAGAATGCCAGACATGAAAGGCCACATATTATATGATTTCATTTATATGAAATGTCCAGAACAGGCGAA 5535
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5536 TATATATAGAGAGAAGGCAGATTAGTGGTTGCTTAGGCTGAAGGGTTGGGGAGGACAAAGGGGTGACTGCTAAT 5609
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5610 TAGTATGGGGTTTCTTTTTTGGGGTGATGTAAACGTTGTAAAGTTGATTGTGGTAATGGTGGCACAACTCTGAA 5683
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5684 TATACTAAAAACCACTGAATTGTATACTTTGAATGTTTGAACTGTGTGGTATGTAGATTTTATCTCAAGTTGTT 5757
Query 259 ------------------------- 258
Sbjct 5758 ATAAAAAATTAAATTACAAATGCAA 5782
