Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13766
- Subject:
- XR_001744520.1
- Aligned Length:
- 5901
- Identities:
- 222
- Gaps:
- 5658
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTCCCGGCCTTCCATCCCAGTTTCTTCTAGGAATTCGGAGCCTCCCCTGCAGCGACTCGGAAGATTCGAGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCGGGGGACAAGTCGGCGCCCCAGAGCGGACGAGTCACCAGGTGTCAAGATGCTGCAAGTACATAGGACTGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGGGCAGGCTGGGGGTCAGCCTCTCCAAGGGTCTTCACCACAAAGCTGTGTTGGCCGTCCGGAGGGAGGATGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAACGCCTGGGAGAGAAGGGCCCCGCTAGCTCCCAAGCACATCAAAGGCATCACCAATCTGGGATACAAGGTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGATACAGCCTTCGAATCGGCGGGCCATTCATGATAAGGACTATGTCAAAGCTGGTGGCATTCTTCAGGAGGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTCTGAAGCTTGTCTAATTTTAGGAGTTAAAAGACCTCCAGAGGAAAAATTAATGTCCAGGAAGACTTATGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTTTCTCCCACACAATAAAAGCTCAGGAGGCCAATATGGGCTTGTTGGATGAGATTCTAAAACAGGAAATTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCTTATTGATTATGAGAAAATGGTGGATCATAGAGGAGTACGGGTAGTGGCATTTGGACAGTGGGCTGGTGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCAGGAATGATCAACATTTTACATGGAATGGGTTTAAGGCTCCTTGCTTTGGGACATCACACACCTTTTATGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CATTGGCATGGCTCATAACTACAGGAATAGCAGTCAGGCTGTGCAAGCTGTCCGTGATGCTGGCTATGAAATAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTTGGGTTTGATGCCTAAGTCAATAGGACCCTTAACATTTGTGTTCACAGGAACTGGTAATGTTTCTAAGGGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCCCAAGCAATCTTTAATGAGCTACCTTGTGAATATGTGGAGCCCCATGAATTAAAAGAAGTTTCCCAAACTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGACCTCAGAAAAGTGTATGGGACGGTGTTAAGTCGTCATCATCATCTTGTCAGGAAAACAGATGCTGTGTATG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATCCTGCAGAGTATGACAAACATCCGGAGCGCTACATAAGTCGTTTTAATACTGATATTGCACCCTATACAACT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGCTTAATTAATGGAATCTACTGGGAACAAAACACTCCTCGCCTCCTAACCCGCCAAGATGCTCAGAGTCTCCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGCTCCGGGCAAGTTCTCACCTGCTGGTGTGGAAGGCTGCCCTGCATTACCACACAAACTCGTGGCAATATGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACATTTCAGCTGACACAGGAGGGTCTATAGAGTTTATGACTGAGTGTACAACAATAGAGCATCCCTTTTGCATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TATGATGCAGACCAGCATATTATTCATGACAGTGTTGAAGGCTCGGGGATCCTGATGTGTTCCATTGACAATTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCCGGCACAGCTCCCAATTGAAGCTACAGAATGCTTTGGAGACATGCTTTACCCTTATGTTGAAGAAATGATAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TATCAGACGCGACACAGCCTCTTGAAAGTCAGAATTTTTCTCCTGTGGTGAGAGATGGAACGTGCTCAGTCACT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTCAATGGGCACCAGGAGAAAGGTTTTGGTTCTTGGATCTGGCTACATATCTGAGCCTGTATTAGAATATTTAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CAAGAGATGGCAATATAGAAATAACAGTAGGATCTGACATGAAGAATCAAATTGAACAGTTAGGCAAGAAATAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AATATTAATCCTGTTAGCATGGACATTTGTAAACAAGAAGAGAAGCTGGGCTTCTTGGTGGCAAAACAGGATCT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TGTCATCAGCTTGTTGCCTTATGTATTGCACCCTCTTGTGGCCAAGGCCTGCATCACAAACAAAGTTAACATGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TCACTGCAAGCTACATCACACCAGCACTAAAAGAATTGGAAAAGAGTGTGGAAGATGCTGGCATCACAATCATT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGTGAATTGGGATTGGACCCTGGTCTGGATCACATGTTAGCAATGGAAACAATAGATAAAGCCAAGGAAGTGGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AGCCACGATTGAATCATATATTTCCTACTGTGGTGGGCTTCCAGCCCCTGAACATTCAAACAATCCATTGAGAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATAAATTTAGCTGGAGTCCAGTGGGAGTTTTGATGAATGTAATGCAGTCTGCCACCTATCTGCTCGATGGAAAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTTGTGAATGTTGCAGGAGGCATCTCCTTTCTTGATGCCGTTACGTCCATGGATTTTTTTCCAGGATTAAATTT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGAAGGCTATCCTAACAGAGACAGTACGAAATATGCTGAGATTTATGGCATTTCTTCTGCTCACACTTTGTTGC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GGGGGACACTGAGATATAAGGGATTGGAATGCTGAATAATGGATTGGAATGTTGAATAATGTTGAATACCTTCC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TATGGTATCCTCCCTAACTCCTTCCCCTTGAACCACCCAGCCCCATCTATGGATATATGAAAGCTTTGAATGGA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TTTGTAAAATTAGGTCTTATAAACAGAGAAGCGCTTCCTGCCTTTAGACCTGAGGCCAACCCTCTCACCTGGAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 ACAACTCCTCTGTGACCTAGTTGGGATTTCACCCTCCTCTGAGCATGATGTGTTGAAGGAAGCTGTTCTTAAGA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AACTAGGAGGAGACAATACCCAGTTGGAGGCTGCTGAATGGTTGGGCTTACTTGGGGATGAACAAGTTCCTCAG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GCAGAGTCCATTCTGGATGCCCTCTCCAAGCATTTGGTCATGAAGCTTTCCTATGGTCCTGAAGAAAAAGATAT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GATTGTGATGAGAGACAGCTTTGGAATCAGACATCCTTCTGGACATTTAGAACATAAAACGATTGATCTTGTGG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTTATGGGGACATCAATGGCTTTTCAGCCATGGCTAAAACCGTGGGGTTACCCACCGCCATGGCAGCCAAAATG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TTGCTTGATGGTGAAATTGGAGCCAAAGGCCTAATGGGGCCCTTTTCAAAGGAGATCTATGGACCAATATTGGA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GCGAATTAAAGCAGAAGGCATTATATATACTACACAGAGTACAATTAAACCATAATTGGGAATTATATTTTGTT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TTTTTCTTCCCAGGCAATACACCTCTGAACATGTGTGTGATAAATGGGTTTGCTAATGTGCTGTTTTAAAGTAT 3034
Query 1 -------------------------------------------------------------ATGG--------G 5
|||| |
Sbjct 3035 AAAGCATAATATGTTTTGGTTAACACAATGTACTTTTTGAACTATAAATCTTTATTTTAATATGGAAATGTTTG 3108
Query 6 GGGC-GGAG-TG--AGCGGTGAACACACTGAACAGAATCTGAGATTTAATAAGCCAA-----------ATCAAC 64
|..| |||| || ||| |||| |||||| ||..||||||||..|.| ||.||.
Sbjct 3109 GAACAGGAGATGCAAGC--------CACT-AACAGA----GAACTTTAATAATTCTACCCTGTATTTTATAAAT 3169
Query 65 A---ATGTGGGAAG----------------------------------------TTCGTTTTGTTTTTT----- 90
| |||| |.||| ||| |||||||||||
Sbjct 3170 ACGTATGT-GAAAGTGATGATCATGCTATTTGTTAATTTATTGTGCCACTTTTTTTC-TTTTGTTTTTTTTTTG 3241
Query 91 ---------TTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGCAGTGCAATGGCACGATCTCGGCTCACT 155
||||||||||.||||||||||||||||||||||||||.||||||.||||.|||||||||||||||
Sbjct 3242 TTGTTGTTGTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACT 3315
Query 156 GCAAGCTCCGCCTCTCAGGTTCACGCCATTCTCCTGCCTCAGCCTTCCCAGTAGCTGGGACTACAGGCGCCCGC 229
||||||||||||||...||||||||||||||||||||||||||||.||.|||||||||||||||||||.|||||
Sbjct 3316 GCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGC 3389
Query 230 CACCATGCCCGGCT-AATTTTTTGTATTTT-------------------------------------------- 258
|||||.|||||||| |||||||||||||||
Sbjct 3390 CACCACGCCCGGCTAAATTTTTTGTATTTTTCAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGTCCACTT 3463
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3464 TTTTCTTAAATGAACATATTGTCTTATAACCAGCAAATGAAGTTTTACTTTTTTAGTCAGAAAAAATTTCGTCA 3537
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3538 TAAAGCTATATTTTTATATTTTTAAAATTGATACAGTTAGATACCTTCAGATTACCTAAGTTAAGTTTTTGCCA 3611
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3612 AAATGCTATTTTATGCCCTTTTTGTAAAGTTATGATTTATTTTGTAAATATAGTTCCTTATAGTTTTCTCTTGA 3685
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3686 GTGTTTGGACATGAGAATAGATAAGATTAAATTACAATTTACAAGATCACTTCATTAGGCACAGGAAAAGTATT 3759
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3760 TAACAAAATTCAACACCCTTTCACAATAAAAAATAAAAAATAAAAAACCCTCAACAAACTAGGAATAGAAGGAA 3833
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3834 ACTTCCTCAACCTGATAAAGGGCATCTATGAAGAACCCATGGTTAGCATCATACTTAATGGTGAAGGACTGGAT 3907
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3908 TATTTCCCCCTGAGATCAGAAACAAGACAAGGATGTCTGCTTTGGCCATTTCTATTCAACTTGTACTGGACAGT 3981
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3982 CAAGAAAGGGCAATTAGGCAAGAAAATAAAATAAAAGTCATCTAGGTTGGAAAGGAAGAAGTATAACTAAATAG 4055
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4056 AGATGGGAGACGATATGGTGGTTTTGTGCATAGTAATCCAAGGGAAAACTATAGAAAATCCAAAGGCATGATTT 4129
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4130 ATTAATAAATAAATTCAGCAAAGTTACAGGATACAGGATTAAATATGCAGAAATTGGTTATCTTTCAATATAGT 4203
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4204 ATCAATGAATAAATCAAAAATGATGTTAAGAAAACAATTTAATTTTCAACAATGGTCAAGCTTGGTGGCTTGTG 4277
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4278 CCTGTAATCCCAACACTTTGGGAGTCTGAGGCAGAAAGACTGCTAGAGGCCAGGAGACCAGCCTGGGAAACAGT 4351
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4352 GAGATCCCATCTCTACAAAAACAAACAAACAAAAAACAACAAGCAAACAAAAAACAGCTGGATGTGATGACACT 4425
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4426 CATCTGTCGTCTCAGCTACTCAGAGGCTGAGGTGTAAGGATGGCTTGAGCCCCAAAGTTCGAAGCTGCAATGAG 4499
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4500 CTATAACTGGGTCACTGCAATCCAGCCTGGATGACAGAGTTAGACCTTGACTCAAAAAAAACAAAAAAGAAAAG 4573
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4574 AAAAAAATTGACAGCATCAGAAAGAGTAAAATACCAATATAATTGAGGGTCCAGAAATATTGATCACATTTATC 4647
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4648 ATCAACTGACTTTTGAAAATAGTGCTAAGACAATTCAATGGGGGCAAAATAGTCTTTTTCATTAAATGATGCTT 4721
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4722 GGAAACATGGATATCCACATGCAAAATAATGAAATTGGACTCCTACCTCATATTGCATATAAAAATTAACTCAA 4795
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4796 AGTTGACCTAAGATCTAAATGTAAGAGCTAATATTGTAAGTATCTTCAAAGAAAACATGGCGTAAATCTTTCTG 4869
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4870 ACTTTGAATTAGGCAATGATTTCTTAAATAAATGACACTAAAAACACAAGCAACAAAAGAAGAAAATAGGTAAA 4943
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4944 TTAAAATTAAAACCATTTGTGTTTCCAAGGACAATATCAAGAAAGCAAAAATACAACCCACAGAATGAGATAAT 5017
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5018 TTTTTTTAAAATCATGTATTAGTTAAGGGAGGAATTTGTATTTAGAATATGTAAAGAACTGTTACAATAATAAT 5091
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5092 TAAAAGGCATATAATTCAATTTTTAAAAATCAACAAGAGATCTGAATTAACAGTTCTCCAAAGAAGATACACAA 5165
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5166 AAGGCCAATAAGCACATGAAAAGGTTCTCAACATCACTAGCCATCAGGGAAATGCAAATGAGATCTACAATGAG 5239
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5240 ATATCACTTAACACTCACTGGAATAGATATATAATCAAAGTGATAATATCAAGTGTTGGTGAGGATGCAGAGAA 5313
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5314 ATTGGAACCCTCATGCACTGTTGGTGGATACCCACGTGATATAAAAACAAATGTCTACACAAAAACTTGTGCAC 5387
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5388 AGATGTTCTTTGCAGCATTATTTATAATAGCCCAAAATTGAAACAGCCCTAATTTCTATCAACTAACAAGTGAA 5461
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5462 TAAACAAAACGTGGCATATCCATACAAGGAATATTATTCAGCAATAAAAAAAGAGATGAAGTACTGATATGCAC 5535
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5536 CACAACATGGAAAAACCTTGAAAACATATCAAGTGAAGAATGCCAGACATGAAAGGCCACATATTATATGATTT 5609
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5610 CATTTATATGAAATGTCCAGAACAGGCGAATATATATAGAGAGAAGGCAGATTAGTGGTTGCTTAGGCTGAAGG 5683
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5684 GTTGGGGAGGACAAAGGGGTGACTGCTAATTAGTATGGGGTTTCTTTTTTGGGGTGATGTAAACGTTGTAAAGT 5757
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5758 TGATTGTGGTAATGGTGGCACAACTCTGAATATACTAAAAACCACTGAATTGTATACTTTGAATGTTTGAACTG 5831
Query 259 ------------------------------------------------------- 258
Sbjct 5832 TGTGGTATGTAGATTTTATCTCAAGTTGTTATAAAAAATTAAATTACAAATGCAA 5886
