Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13766
- Subject:
- XR_001744521.1
- Aligned Length:
- 5828
- Identities:
- 222
- Gaps:
- 5585
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTCCCGGCCTTCCATCCCAGTTTCTTCTAGGAATTCGGAGCCTCCCCTGCAGCGACTCGGAAGATTCGAGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCGGGGGACAAGTCGGCGCCCCAGAGCGGACGAGTCACCAGGTGTCAAGATGCTGCAAGTACATAGGACTGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGGGCAGGCTGGGGGTCAGCCTCTCCAAGGGTCTTCACCACAAAGCTGTGTTGGCCGTCCGGAGGGAGGATGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAACGCCTGGGAGAGAAGGGCCCCGCTAGCTCCCAAGCACATCAAAGGCATCACCAATCTGGGATACAAGGTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGATACAGCCTTCGAATCGGCGGGCCATTCATGATAAGGACTATGTCAAAGCTGGTGGCATTCTTCAGGAGGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTCTGAAGCTTGTCTAATTTTAGGAGTTAAAAGACCTCCAGAGGAAAAATTAATGTCCAGGAAGACTTATGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTTTCTCCCACACAATAAAAGCTCAGGAGGCCAATATGGGCTTGTTGGATGAGATTCTAAAACAGGAAATTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCTTATTGATTATGAGAAAATGGTGGATCATAGAGGAGTACGGGTAGTGGCATTTGGACAGTGGGCTGGTGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCAGGAATGATCAACATTTTACATGGAATGGGTTTAAGGCTCCTTGCTTTGGGACATCACACACCTTTTATGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CATTGGCATGGCTCATAACTACAGGAATAGCAGTCAGGCTGTGCAAGCTGTCCGTGATGCTGGCTATGAAATAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTTGGGTTTGATGCCTAAGTCAATAGGACCCTTAACATTTGTGTTCACAGGAACTGGTAATGTTTCTAAGGGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCCCAAGCAATCTTTAATGAGCTACCTTGTGAATATGTGGAGCCCCATGAATTAAAAGAAGTTTCCCAAACTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGACCTCAGAAAAGTGTATGGGACGGTGTTAAGTCGTCATCATCATCTTGTCAGGAAAACAGATGCTGTGTATG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATCCTGCAGAGTATGACAAACATCCGGAGCGCTACATAAGTCGTTTTAATACTGATATTGCACCCTATACAACT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGCTTAATTAATGGAATCTACTGGGAACAAAACACTCCTCGCCTCCTAACCCGCCAAGATGCTCAGAGTCTCCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGCTCCGGGCAAGTTCTCACCTGCTGGTGTGGAAGGCTGCCCTGCATTACCACACAAACTCGTGGCAATATGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACATTTCAGCTGACACAGGAGGGTCTATAGAGTTTATGACTGAGTGTACAACAATAGAGCATCCCTTTTGCATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TATGATGCAGACCAGCATATTATTCATGACAGTGTTGAAGGCTCGGGGATCCTGATGTGTTCCATTGACAATTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCCGGCACAGCTCCCAATTGAAGCTACAGAATGCTTTGGAGACATGCTTTACCCTTATGTTGAAGAAATGATAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TATCAGACGCGACACAGCCTCTTGAAAGTCAGAATTTTTCTCCTGTGGTGAGAGATGGAACGTGCTCAGTCACT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTCAATGGGCACCAGGAGAAAGGTTTTGGTTCTTGGATCTGGCTACATATCTGAGCCTGTATTAGAATATTTAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CAAGAGATGGCAATATAGAAATAACAGTAGGATCTGACATGAAGAATCAAATTGAACAGTTAGGCAAGAAATAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AATATTAATCCTGTTAGCATGGACATTTGTAAACAAGAAGAGAAGCTGGGCTTCTTGGTGGCAAAACAGGATCT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TGTCATCAGCTTGTTGCCTTATGTATTGCACCCTCTTGTGGCCAAGGCCTGCATCACAAACAAAGTTAACATGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TCACTGCAAGCTACATCACACCAGCACTAAAAGAATTGGAAAAGAGTTTTCCTTTTTCCTCTTTCCACCTGCTG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CAGTGTGGAAGATGCTGGCATCACAATCATTGGTGAATTGGGATTGGACCCTGGTCTGGATCACATGTTAGCAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGGAAACAATAGATAAAGCCAAGGAAGTGGGAGCCACGATTGAATCATATATTTCCTACTGTGGTGGGCTTCCA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GCCCCTGAACATTCAAACAATCCATTGAGATATAAATTTAGCTGGAGTCCAGTGGGAGTTTTGATGAATGTAAT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GCAGTCTGCCACCTATCTGCTCGATGGAAAGGTTGTGAATGTTGCAGGAGGCATCTCCTTTCTTGATGCCGTTA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CGTCCATGGATTTTTTTCCAGGATTAAATTTGGAAGGCTATCCTAACAGAGACAGTACGAAATATGCTGAGATT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TATGGCATTTCTTCTGCTCACACTTTGTTGCGGGGGACACTGAGATATAAGGGATATATGAAAGCTTTGAATGG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ATTTGTAAAATTAGGTCTTATAAACAGAGAAGCGCTTCCTGCCTTTAGACCTGAGGCCAACCCTCTCACCTGGA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AACAACTCCTCTGTGACCTAGTTGGGATTTCACCCTCCTCTGAGCATGATGTGTTGAAGGAAGCTGTTCTTAAG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AAACTAGGAGGAGACAATACCCAGTTGGAGGCTGCTGAATGGTTGGGCTTACTTGGGGATGAACAAGTTCCTCA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GGCAGAGTCCATTCTGGATGCCCTCTCCAAGCATTTGGTCATGAAGCTTTCCTATGGTCCTGAAGAAAAAGATA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TGATTGTGATGAGAGACAGCTTTGGAATCAGACATCCTTCTGGACATTTAGAACATAAAACGATTGATCTTGTG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GCTTATGGGGACATCAATGGCTTTTCAGCCATGGCTAAAACCGTGGGGTTACCCACCGCCATGGCAGCCAAAAT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 GTTGCTTGATGGTGAAATTGGAGCCAAAGGCCTAATGGGGCCCTTTTCAAAGGAGATCTATGGACCAATATTGG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AGCGAATTAAAGCAGAAGGCATTATATATACTACACAGAGTACAATTAAACCATAATTGGGAATTATATTTTGT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTTTTTCTTCCCAGGCAATACACCTCTGAACATGTGTGTGATAAATGGGTTTGCTAATGTGCTGTTTTAAAGTA 2960
Query 1 --------------------------------------------------------------ATGG-------- 4
||||
Sbjct 2961 TAAAGCATAATATGTTTTGGTTAACACAATGTACTTTTTGAACTATAAATCTTTATTTTAATATGGAAATGTTT 3034
Query 5 GGGGC-GGAG-TG--AGCGGTGAACACACTGAACAGAATCTGAGATTTAATAAGCCAA-----------ATCAA 63
||..| |||| || ||| |||| |||||| ||..||||||||..|.| ||.||
Sbjct 3035 GGAACAGGAGATGCAAGC--------CACT-AACAGA----GAACTTTAATAATTCTACCCTGTATTTTATAAA 3095
Query 64 CA---ATGTGGGAAG----------------------------------------TTCGTTTTGTTTTTT---- 90
.| |||| |.||| ||| |||||||||||
Sbjct 3096 TACGTATGT-GAAAGTGATGATCATGCTATTTGTTAATTTATTGTGCCACTTTTTTTC-TTTTGTTTTTTTTTT 3167
Query 91 ----------TTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGCAGTGCAATGGCACGATCTCGGCTCAC 154
||||||||||.||||||||||||||||||||||||||.||||||.||||.||||||||||||||
Sbjct 3168 GTTGTTGTTGTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCAC 3241
Query 155 TGCAAGCTCCGCCTCTCAGGTTCACGCCATTCTCCTGCCTCAGCCTTCCCAGTAGCTGGGACTACAGGCGCCCG 228
|||||||||||||||...||||||||||||||||||||||||||||.||.|||||||||||||||||||.||||
Sbjct 3242 TGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCG 3315
Query 229 CCACCATGCCCGGCT-AATTTTTTGTATTTT------------------------------------------- 258
||||||.|||||||| |||||||||||||||
Sbjct 3316 CCACCACGCCCGGCTAAATTTTTTGTATTTTTCAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGTCCACT 3389
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3390 TTTTTCTTAAATGAACATATTGTCTTATAACCAGCAAATGAAGTTTTACTTTTTTAGTCAGAAAAAATTTCGTC 3463
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3464 ATAAAGCTATATTTTTATATTTTTAAAATTGATACAGTTAGATACCTTCAGATTACCTAAGTTAAGTTTTTGCC 3537
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3538 AAAATGCTATTTTATGCCCTTTTTGTAAAGTTATGATTTATTTTGTAAATATAGTTCCTTATAGTTTTCTCTTG 3611
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3612 AGTGTTTGGACATGAGAATAGATAAGATTAAATTACAATTTACAAGATCACTTCATTAGGCACAGGAAAAGTAT 3685
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3686 TTAACAAAATTCAACACCCTTTCACAATAAAAAATAAAAAATAAAAAACCCTCAACAAACTAGGAATAGAAGGA 3759
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3760 AACTTCCTCAACCTGATAAAGGGCATCTATGAAGAACCCATGGTTAGCATCATACTTAATGGTGAAGGACTGGA 3833
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3834 TTATTTCCCCCTGAGATCAGAAACAAGACAAGGATGTCTGCTTTGGCCATTTCTATTCAACTTGTACTGGACAG 3907
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3908 TCAAGAAAGGGCAATTAGGCAAGAAAATAAAATAAAAGTCATCTAGGTTGGAAAGGAAGAAGTATAACTAAATA 3981
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3982 GAGATGGGAGACGATATGGTGGTTTTGTGCATAGTAATCCAAGGGAAAACTATAGAAAATCCAAAGGCATGATT 4055
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4056 TATTAATAAATAAATTCAGCAAAGTTACAGGATACAGGATTAAATATGCAGAAATTGGTTATCTTTCAATATAG 4129
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4130 TATCAATGAATAAATCAAAAATGATGTTAAGAAAACAATTTAATTTTCAACAATGGTCAAGCTTGGTGGCTTGT 4203
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4204 GCCTGTAATCCCAACACTTTGGGAGTCTGAGGCAGAAAGACTGCTAGAGGCCAGGAGACCAGCCTGGGAAACAG 4277
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4278 TGAGATCCCATCTCTACAAAAACAAACAAACAAAAAACAACAAGCAAACAAAAAACAGCTGGATGTGATGACAC 4351
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4352 TCATCTGTCGTCTCAGCTACTCAGAGGCTGAGGTGTAAGGATGGCTTGAGCCCCAAAGTTCGAAGCTGCAATGA 4425
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4426 GCTATAACTGGGTCACTGCAATCCAGCCTGGATGACAGAGTTAGACCTTGACTCAAAAAAAACAAAAAAGAAAA 4499
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4500 GAAAAAAATTGACAGCATCAGAAAGAGTAAAATACCAATATAATTGAGGGTCCAGAAATATTGATCACATTTAT 4573
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4574 CATCAACTGACTTTTGAAAATAGTGCTAAGACAATTCAATGGGGGCAAAATAGTCTTTTTCATTAAATGATGCT 4647
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4648 TGGAAACATGGATATCCACATGCAAAATAATGAAATTGGACTCCTACCTCATATTGCATATAAAAATTAACTCA 4721
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4722 AAGTTGACCTAAGATCTAAATGTAAGAGCTAATATTGTAAGTATCTTCAAAGAAAACATGGCGTAAATCTTTCT 4795
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4796 GACTTTGAATTAGGCAATGATTTCTTAAATAAATGACACTAAAAACACAAGCAACAAAAGAAGAAAATAGGTAA 4869
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4870 ATTAAAATTAAAACCATTTGTGTTTCCAAGGACAATATCAAGAAAGCAAAAATACAACCCACAGAATGAGATAA 4943
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4944 TTTTTTTTAAAATCATGTATTAGTTAAGGGAGGAATTTGTATTTAGAATATGTAAAGAACTGTTACAATAATAA 5017
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5018 TTAAAAGGCATATAATTCAATTTTTAAAAATCAACAAGAGATCTGAATTAACAGTTCTCCAAAGAAGATACACA 5091
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5092 AAAGGCCAATAAGCACATGAAAAGGTTCTCAACATCACTAGCCATCAGGGAAATGCAAATGAGATCTACAATGA 5165
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5166 GATATCACTTAACACTCACTGGAATAGATATATAATCAAAGTGATAATATCAAGTGTTGGTGAGGATGCAGAGA 5239
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5240 AATTGGAACCCTCATGCACTGTTGGTGGATACCCACGTGATATAAAAACAAATGTCTACACAAAAACTTGTGCA 5313
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5314 CAGATGTTCTTTGCAGCATTATTTATAATAGCCCAAAATTGAAACAGCCCTAATTTCTATCAACTAACAAGTGA 5387
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5388 ATAAACAAAACGTGGCATATCCATACAAGGAATATTATTCAGCAATAAAAAAAGAGATGAAGTACTGATATGCA 5461
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5462 CCACAACATGGAAAAACCTTGAAAACATATCAAGTGAAGAATGCCAGACATGAAAGGCCACATATTATATGATT 5535
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5536 TCATTTATATGAAATGTCCAGAACAGGCGAATATATATAGAGAGAAGGCAGATTAGTGGTTGCTTAGGCTGAAG 5609
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5610 GGTTGGGGAGGACAAAGGGGTGACTGCTAATTAGTATGGGGTTTCTTTTTTGGGGTGATGTAAACGTTGTAAAG 5683
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5684 TTGATTGTGGTAATGGTGGCACAACTCTGAATATACTAAAAACCACTGAATTGTATACTTTGAATGTTTGAACT 5757
Query 259 -------------------------------------------------------- 258
Sbjct 5758 GTGTGGTATGTAGATTTTATCTCAAGTTGTTATAAAAAATTAAATTACAAATGCAA 5813
