Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13766
- Subject:
- XR_001744523.1
- Aligned Length:
- 5708
- Identities:
- 222
- Gaps:
- 5465
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTCCCGGCCTTCCATCCCAGTTTCTTCTAGGAATTCGGAGCCTCCCCTGCAGCGACTCGGAAGATTCGAGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCGGGGGACAAGTCGGCGCCCCAGAGCGGACGAGTCACCAGGTGTCAAGATGCTGCAAGTACATAGGACTGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGGGCAGGCTGGGGGTCAGCCTCTCCAAGGGTCTTCACCACAAAGCTGTGTTGGCCGTCCGGAGGGAGGATGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAACGCCTGGGAGAGAAGGGCCCCGCTAGCTCCCAAGCACATCAAAGGCATCACCAATCTGGGATACAAGGTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGATACAGCCTTCGAATCGGCGGGCCATTCATGATAAGGACTATGTCAAAGCTGGTGGCATTCTTCAGGAGGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTCTGAAGCTTGTCTAATTTTAGGAGTTAAAAGACCTCCAGAGGAAAAATTAATGTCCAGGAAGACTTATGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTTTCTCCCACACAATAAAAGCTCAGGAGGCCAATATGGGCTTGTTGGATGAGATTCTAAAACAGGAAATTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCTTATTGATTATGAGAAAATGGTGGATCATAGAGGAGTACGGGTAGTGGCATTTGGACAGTGGGCTGGTGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCAGGAATGATCAACATTTTACATGGAATGGGTTTAAGGCTCCTTGCTTTGGGACATCACACACCTTTTATGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CATTGGCATGGCTCATAACTACAGGAATAGCAGTCAGGCTGTGCAAGCTGTCCGTGATGCTGGCTATGAAATAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTTGGGTTTGATGCCTAAGTCAATAGGACCCTTAACATTTGTGTTCACAGGAACTGGTAATGTTTCTAAGGGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCCCAAGCAATCTTTAATGAGCTACCTTGTGAATATGTGGAGCCCCATGAATTAAAAGAAGTTTCCCAAACTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGACCTCAGAAAAGTGTATGGGACGGTGTTAAGTCGTCATCATCATCTTGTCAGGAAAACAGATGCTGTGTATG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATCCTGCAGAGTATGACAAACATCCGGAGCGCTACATAAGTCGTTTTAATACTGATATTGCACCCTATACAACT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGCTTAATTAATGGAATCTACTGGGAACAAAACACTCCTCGCCTCCTAACCCGCCAAGATGCTCAGAGTCTCCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGCTCCGGGCAAGTTCTCACCTGCTGGTGTGGAAGGCTGCCCTGCATTACCACACAAACTCGTGGCAATATGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACATTTCAGCTGACACAGGAGGGTCTATAGAGTTTATGACTGAGTGTACAACAATAGAGCATCCCTTTTGCATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TATGATGCAGACCAGCATATTATTCATGACAGTGTTGAAGGCTCGGGGATCCTGATGTGTTCCATTGACAATTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCCGGCACAGCTCCCAATTGAAGCTACAGAATGCTTTGGAGACATGCTTTACCCTTATGTTGAAGAAATGATAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TATCAGACGCGACACAGCCTCTTGAAAGTCAGAATTTTTCTCCTGTGGTGAGAGATGGAACGTGCTCAGTCACT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTCAATGGGCACCAGGAGAAAGGTTTTGGTTCTTGGATCTGGCTACATATCTGAGCCTGTATTAGAATATTTAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CAAGAGATGGCAATATAGAAATAACAGTAGGATCTGACATGAAGAATCAAATTGAACAGTTAGGCAAGAAATAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AATATTAATCCTGTTAGCATGGACATTTGTAAACAAGAAGAGAAGCTGGGCTTCTTGGTGGCAAAACAGGATCT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TGTCATCAGCTTGTTGCCTTATGTATTGCACCCTCTTGTGGCCAAGGCCTGCATCACAAACAAAGTTAACATGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TCACTGCAAGCTACATCACACCAGCACTAAAAGAATTGGAAAAGAGTGTGGAAGATGCTGGCATCACAATCATT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGTGAATTGGGATTGGACCCTGGTCTGGATCACATGTTAGCAATGGAAACAATAGATAAAGCCAAGGAAGTGGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AGCCACGATTGAATCATATATTTCCTACTGTGGTGGGCTTCCAGCCCCTGAACATTCAAACAATCCATTGAGAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATAAATTTAGCTGGAGTCCAGTGGGAGTTTTGATGAATGTAATGCAGTCTGCCACCTATCTGCTCGATGGAAAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTTGTGAATGTTGCAGGAGGCATCTCCTTTCTTGATGCCGTTACGTCCATGGATTTTTTTCCAGGATTAAATTT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGAAGGCTATCCTAACAGAGACAGTACGAAATATGCTGAGATTTATGGCATTTCTTCTGCTCACACTTTGTTGC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GGGGGACACTGAGATATAAGGGATATATGAAAGCTTTGAATGGATTTGTAAAATTAGGTCTTATAAACAGAGAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GCGCTTCCTGCCTTTAGACCTGAGGCCAACCCTCTCACCTGGAAACAACTCCTCTGTGACCTAGTTGGGATTTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACCCTCCTCTGAGCATGATGTGTTGAAGGAAGCTGTTCTTAAGAAACTAGGAGGAGACAATACCCAGTTGGAGG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CTGCTGAATGGTCCTGAAGAAAAAGATATGATTGTGATGAGAGACAGCTTTGGAATCAGACATCCTTCTGGACA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTTAGAACATAAAACGATTGATCTTGTGGCTTATGGGGACATCAATGGCTTTTCAGCCATGGCTAAAACCGTGG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GGTTACCCACCGCCATGGCAGCCAAAATGTTGCTTGATGGTGAAATTGGAGCCAAAGGCCTAATGGGGCCCTTT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TCAAAGGAGATCTATGGACCAATATTGGAGCGAATTAAAGCAGAAGGCATTATATATACTACACAGAGTACAAT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TAAACCATAATTGGGAATTATATTTTGTTTTTTTCTTCCCAGGCAATACACCTCTGAACATGTGTGTGATAAAT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 GGGTTTGCTAATGTGCTGTTTTAAAGTATAAAGCATAATATGTTTTGGTTAACACAATGTACTTTTTGAACTAT 2886
Query 1 ----------------ATGG--------GGGGC-GGAG-TG--AGCGGTGAACACACTGAACAGAATCTGAGAT 46
|||| ||..| |||| || ||| |||| |||||| ||..|
Sbjct 2887 AAATCTTTATTTTAATATGGAAATGTTTGGAACAGGAGATGCAAGC--------CACT-AACAGA----GAACT 2947
Query 47 TTAATAAGCCAA-----------ATCAACA---ATGTGGGAAG------------------------------- 75
|||||||..|.| ||.||.| |||| |.|||
Sbjct 2948 TTAATAATTCTACCCTGTATTTTATAAATACGTATGT-GAAAGTGATGATCATGCTATTTGTTAATTTATTGTG 3020
Query 76 ---------TTCGTTTTGTTTTTT--------------TTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCT 126
||| ||||||||||| ||||||||||.|||||||||||||||||||||||||
Sbjct 3021 CCACTTTTTTTC-TTTTGTTTTTTTTTTGTTGTTGTTGTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCT 3093
Query 127 GCAGTGCAATGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCTCAGGTTCACGCCATTCTCCTGCCTCAGCCT 200
|.||||||.||||.|||||||||||||||||||||||||||||...||||||||||||||||||||||||||||
Sbjct 3094 GGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCT 3167
Query 201 TCCCAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCT-AATTTTTTGTATTTT--------------- 258
.||.|||||||||||||||||||.||||||||||.|||||||| |||||||||||||||
Sbjct 3168 CCCAAGTAGCTGGGACTACAGGCACCCGCCACCACGCCCGGCTAAATTTTTTGTATTTTTCAGTAGAGACGGGG 3241
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3242 TTTCACCATGTTAGCCAGGATGTCCACTTTTTTCTTAAATGAACATATTGTCTTATAACCAGCAAATGAAGTTT 3315
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3316 TACTTTTTTAGTCAGAAAAAATTTCGTCATAAAGCTATATTTTTATATTTTTAAAATTGATACAGTTAGATACC 3389
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3390 TTCAGATTACCTAAGTTAAGTTTTTGCCAAAATGCTATTTTATGCCCTTTTTGTAAAGTTATGATTTATTTTGT 3463
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3464 AAATATAGTTCCTTATAGTTTTCTCTTGAGTGTTTGGACATGAGAATAGATAAGATTAAATTACAATTTACAAG 3537
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3538 ATCACTTCATTAGGCACAGGAAAAGTATTTAACAAAATTCAACACCCTTTCACAATAAAAAATAAAAAATAAAA 3611
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3612 AACCCTCAACAAACTAGGAATAGAAGGAAACTTCCTCAACCTGATAAAGGGCATCTATGAAGAACCCATGGTTA 3685
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3686 GCATCATACTTAATGGTGAAGGACTGGATTATTTCCCCCTGAGATCAGAAACAAGACAAGGATGTCTGCTTTGG 3759
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3760 CCATTTCTATTCAACTTGTACTGGACAGTCAAGAAAGGGCAATTAGGCAAGAAAATAAAATAAAAGTCATCTAG 3833
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3834 GTTGGAAAGGAAGAAGTATAACTAAATAGAGATGGGAGACGATATGGTGGTTTTGTGCATAGTAATCCAAGGGA 3907
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3908 AAACTATAGAAAATCCAAAGGCATGATTTATTAATAAATAAATTCAGCAAAGTTACAGGATACAGGATTAAATA 3981
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3982 TGCAGAAATTGGTTATCTTTCAATATAGTATCAATGAATAAATCAAAAATGATGTTAAGAAAACAATTTAATTT 4055
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4056 TCAACAATGGTCAAGCTTGGTGGCTTGTGCCTGTAATCCCAACACTTTGGGAGTCTGAGGCAGAAAGACTGCTA 4129
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4130 GAGGCCAGGAGACCAGCCTGGGAAACAGTGAGATCCCATCTCTACAAAAACAAACAAACAAAAAACAACAAGCA 4203
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4204 AACAAAAAACAGCTGGATGTGATGACACTCATCTGTCGTCTCAGCTACTCAGAGGCTGAGGTGTAAGGATGGCT 4277
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4278 TGAGCCCCAAAGTTCGAAGCTGCAATGAGCTATAACTGGGTCACTGCAATCCAGCCTGGATGACAGAGTTAGAC 4351
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4352 CTTGACTCAAAAAAAACAAAAAAGAAAAGAAAAAAATTGACAGCATCAGAAAGAGTAAAATACCAATATAATTG 4425
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4426 AGGGTCCAGAAATATTGATCACATTTATCATCAACTGACTTTTGAAAATAGTGCTAAGACAATTCAATGGGGGC 4499
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4500 AAAATAGTCTTTTTCATTAAATGATGCTTGGAAACATGGATATCCACATGCAAAATAATGAAATTGGACTCCTA 4573
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4574 CCTCATATTGCATATAAAAATTAACTCAAAGTTGACCTAAGATCTAAATGTAAGAGCTAATATTGTAAGTATCT 4647
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4648 TCAAAGAAAACATGGCGTAAATCTTTCTGACTTTGAATTAGGCAATGATTTCTTAAATAAATGACACTAAAAAC 4721
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4722 ACAAGCAACAAAAGAAGAAAATAGGTAAATTAAAATTAAAACCATTTGTGTTTCCAAGGACAATATCAAGAAAG 4795
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4796 CAAAAATACAACCCACAGAATGAGATAATTTTTTTTAAAATCATGTATTAGTTAAGGGAGGAATTTGTATTTAG 4869
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4870 AATATGTAAAGAACTGTTACAATAATAATTAAAAGGCATATAATTCAATTTTTAAAAATCAACAAGAGATCTGA 4943
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4944 ATTAACAGTTCTCCAAAGAAGATACACAAAAGGCCAATAAGCACATGAAAAGGTTCTCAACATCACTAGCCATC 5017
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5018 AGGGAAATGCAAATGAGATCTACAATGAGATATCACTTAACACTCACTGGAATAGATATATAATCAAAGTGATA 5091
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5092 ATATCAAGTGTTGGTGAGGATGCAGAGAAATTGGAACCCTCATGCACTGTTGGTGGATACCCACGTGATATAAA 5165
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5166 AACAAATGTCTACACAAAAACTTGTGCACAGATGTTCTTTGCAGCATTATTTATAATAGCCCAAAATTGAAACA 5239
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5240 GCCCTAATTTCTATCAACTAACAAGTGAATAAACAAAACGTGGCATATCCATACAAGGAATATTATTCAGCAAT 5313
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5314 AAAAAAAGAGATGAAGTACTGATATGCACCACAACATGGAAAAACCTTGAAAACATATCAAGTGAAGAATGCCA 5387
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5388 GACATGAAAGGCCACATATTATATGATTTCATTTATATGAAATGTCCAGAACAGGCGAATATATATAGAGAGAA 5461
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5462 GGCAGATTAGTGGTTGCTTAGGCTGAAGGGTTGGGGAGGACAAAGGGGTGACTGCTAATTAGTATGGGGTTTCT 5535
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5536 TTTTTGGGGTGATGTAAACGTTGTAAAGTTGATTGTGGTAATGGTGGCACAACTCTGAATATACTAAAAACCAC 5609
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5610 TGAATTGTATACTTTGAATGTTTGAACTGTGTGGTATGTAGATTTTATCTCAAGTTGTTATAAAAAATTAAATT 5683
Query 259 ---------- 258
Sbjct 5684 ACAAATGCAA 5693
