Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13766
- Subject:
- XR_001744524.1
- Aligned Length:
- 5812
- Identities:
- 222
- Gaps:
- 5569
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTCCCGGCCTTCCATCCCAGTTTCTTCTAGGAATTCGGAGCCTCCCCTGCAGCGACTCGGAAGATTCGAGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCGGGGGACAAGTCGGCGCCCCAGAGCGGACGAGTCACCAGGTGTCAAGATGCTGCAAGTACATAGGACTGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGGGCAGGCTGGGGGTCAGCCTCTCCAAGGGTCTTCACCACAAAGCTGTGTTGGCCGTCCGGAGGGAGGATGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAACGCCTGGGAGAGAAGGGCCCCGCTAGCTCCCAAGCACATCAAAGGCATCACCAATCTGGGATACAAGGTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGATACAGCCTTCGAATCGGCGGGCCATTCATGATAAGGACTATGTCAAAGCTGGTGGCATTCTTCAGGAGGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTCTGAAGCTTGTCTAATTTTAGGAGTTAAAAGACCTCCAGAGGAAAAATTAATGTCCAGGAAGACTTATGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTTTCTCCCACACAATAAAAGCTCAGGAGGCCAATATGGGCTTGTTGGATGAGATTCTAAAACAGGAAATTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCTTATTGATTATGAGAAAATGGTGGATCATAGAGGAGTACGGGTAGTGGCATTTGGACAGTGGGCTGGTGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCAGGAATGATCAACATTTTACATGGAATGGGTTTAAGGCTCCTTGCTTTGGGACATCACACACCTTTTATGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CATTGGCATGGCTCATAACTACAGGAATAGCAGTCAGGCTGTGCAAGCTGTCCGTGATGCTGGCTATGAAATAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTTGGGTTTGATGCCTAAGTCAATAGGACCCTTAACATTTGTGTTCACAGGAACTGGTAATGTTTCTAAGGGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCCCAAGCAATCTTTAATGAGCTACCTTGTGAATATGTGGAGCCCCATGAATTAAAAGAAGTTTCCCAAACTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGACCTCAGAAAAGTGTATGGGACGGTGTTAAGTCGTCATCATCATCTTGTCAGGAAAACAGATGCTGTGTATG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATCCTGCAGAGTATGACAAACATCCGGAGCGCTACATAAGTCGTTTTAATACTGATATTGCACCCTATACAACT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGCTTAATTAATGGAATCTACTGGGAACAAAACACTCCTCGCCTCCTAACCCGCCAAGATGCTCAGAGTCTCCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGCTCCGGGCAAGTTCTCACCTGCTGGTGTGGAAGGCTGCCCTGCATTACCACACAAACTCGTGGCAATATGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACATTTCAGCTGACACAGGAGGGTCTATAGAGTTTATGACTGAGTGTACAACAATAGAGCATCCCTTTTGCATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TATGATGCAGACCAGCATATTATTCATGACAGTGTTGAAGGCTCGGGGATCCTGATGTGTTCCATTGACAATTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCCGGCACAGCTCCCAATTGAAGCTACAGAATGCTTTGGAGACATGCTTTACCCTTATGTTGAAGAAATGATAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TATCAGACGCGACACAGCCTCTTGAAAGTCAGAATTTTTCTCCTGTGGTGAGAGATGGAACGTGCTCAGTCACT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTCAATGGGCACCAGGAGAAAGGTTTTGGTTCTTGGATCTGGCTACATATCTGAGCCTGTATTAGAATATTTAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CAAGAGATGGCAATATAGAAATAACAGTAGGATCTGACATGAAGAATCAAATTGAACAGTTAGGCAAGAAATAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AATATTAATCCTGTTAGCATGGACATTTGTAAACAAGAAGAGAAGCTGGGCTTCTTGGTGGCAAAACAGGATCT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TGTCATCAGCTTGTTGCCTTATGTATTGCACCCTCTTGTGGCCAAGGCCTGCATCACAAACAAAGTTAACATGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TCACTGCAAGCTACATCACACCAGCACTAAAAGAATTGGAAAAGAGTGTGGAAGATGCTGGCATCACAATCATT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GGTGAATTGGGATTGGACCCTGGTCTGGATCACATGTTAGCAATGGAAACAATAGATAAAGCCAAGGAAGTGGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AGCCACGATTGAATCATATATTTCCTACTGTGGTGGGCTTCCAGCCCCTGAACATTCAAACAATCCATTGAGAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATAAATTTAGCTGGAGTCCAGTGGGAGTTTTGATGAATGTAATGCAGTCTGCCACCTATCTGCTCGATGGAAAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GTTGTGAATGTTGCAGGAGGCATCTCCTTTCTTGATGCCGTTACGTCCATGGATTTTTTTCCAGGATTAAATTT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGAAGGCTATCCTAACAGAGACAGTACGAAATATGCTGAGATTTATGGCATTTCTTCTGCTCACACTTTGTTGC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GGGGGACACTGAGATATAAGGGATTGGAATGCTGAATAATGGATTGGAATGTTGAATAATGTTGAATACCTTCC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TATGGTATCCTCCCTAACTCCTTCCCCTTGAACCACCCAGCCCCATCTATGGATATATGAAAGCTTTGAATGGA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TTTGTAAAATTAGGTCTTATAAACAGAGAAGCGCTTCCTGCCTTTAGACCTGAGGCCAACCCTCTCACCTGGAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 ACAACTCCTCTGTGACCTAGTTGGGATTTCACCCTCCTCTGAGCATGATGTGTTGAAGGAAGCTGTTCTTAAGA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AACTAGGAGGAGACAATACCCAGTTGGAGGCTGCTGAATGGTCCTGAAGAAAAAGATATGATTGTGATGAGAGA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CAGCTTTGGAATCAGACATCCTTCTGGACATTTAGAACATAAAACGATTGATCTTGTGGCTTATGGGGACATCA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ATGGCTTTTCAGCCATGGCTAAAACCGTGGGGTTACCCACCGCCATGGCAGCCAAAATGTTGCTTGATGGTGAA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 ATTGGAGCCAAAGGCCTAATGGGGCCCTTTTCAAAGGAGATCTATGGACCAATATTGGAGCGAATTAAAGCAGA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 AGGCATTATATATACTACACAGAGTACAATTAAACCATAATTGGGAATTATATTTTGTTTTTTTCTTCCCAGGC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AATACACCTCTGAACATGTGTGTGATAAATGGGTTTGCTAATGTGCTGTTTTAAAGTATAAAGCATAATATGTT 2960
Query 1 ----------------------------------------------ATGG--------GGGGC-GGAG-TG--A 16
|||| ||..| |||| || |
Sbjct 2961 TTGGTTAACACAATGTACTTTTTGAACTATAAATCTTTATTTTAATATGGAAATGTTTGGAACAGGAGATGCAA 3034
Query 17 GCGGTGAACACACTGAACAGAATCTGAGATTTAATAAGCCAA-----------ATCAACA---ATGTGGGAAG- 75
|| |||| |||||| ||..||||||||..|.| ||.||.| |||| |.|||
Sbjct 3035 GC--------CACT-AACAGA----GAACTTTAATAATTCTACCCTGTATTTTATAAATACGTATGT-GAAAGT 3094
Query 76 ---------------------------------------TTCGTTTTGTTTTTT--------------TTTTTT 96
||| ||||||||||| ||||||
Sbjct 3095 GATGATCATGCTATTTGTTAATTTATTGTGCCACTTTTTTTC-TTTTGTTTTTTTTTTGTTGTTGTTGTTTTTT 3167
Query 97 GAGACGGAGTCTCGCTCTGTCACCCAGGCTGCAGTGCAATGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCT 170
||||.||||||||||||||||||||||||||.||||||.||||.|||||||||||||||||||||||||||||.
Sbjct 3168 GAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCC 3241
Query 171 CAGGTTCACGCCATTCTCCTGCCTCAGCCTTCCCAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCT- 243
..||||||||||||||||||||||||||||.||.|||||||||||||||||||.||||||||||.||||||||
Sbjct 3242 TGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACCACGCCCGGCTA 3315
Query 244 AATTTTTTGTATTTT----------------------------------------------------------- 258
|||||||||||||||
Sbjct 3316 AATTTTTTGTATTTTTCAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGTCCACTTTTTTCTTAAATGAAC 3389
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3390 ATATTGTCTTATAACCAGCAAATGAAGTTTTACTTTTTTAGTCAGAAAAAATTTCGTCATAAAGCTATATTTTT 3463
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3464 ATATTTTTAAAATTGATACAGTTAGATACCTTCAGATTACCTAAGTTAAGTTTTTGCCAAAATGCTATTTTATG 3537
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3538 CCCTTTTTGTAAAGTTATGATTTATTTTGTAAATATAGTTCCTTATAGTTTTCTCTTGAGTGTTTGGACATGAG 3611
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3612 AATAGATAAGATTAAATTACAATTTACAAGATCACTTCATTAGGCACAGGAAAAGTATTTAACAAAATTCAACA 3685
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3686 CCCTTTCACAATAAAAAATAAAAAATAAAAAACCCTCAACAAACTAGGAATAGAAGGAAACTTCCTCAACCTGA 3759
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3760 TAAAGGGCATCTATGAAGAACCCATGGTTAGCATCATACTTAATGGTGAAGGACTGGATTATTTCCCCCTGAGA 3833
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3834 TCAGAAACAAGACAAGGATGTCTGCTTTGGCCATTTCTATTCAACTTGTACTGGACAGTCAAGAAAGGGCAATT 3907
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3908 AGGCAAGAAAATAAAATAAAAGTCATCTAGGTTGGAAAGGAAGAAGTATAACTAAATAGAGATGGGAGACGATA 3981
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3982 TGGTGGTTTTGTGCATAGTAATCCAAGGGAAAACTATAGAAAATCCAAAGGCATGATTTATTAATAAATAAATT 4055
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4056 CAGCAAAGTTACAGGATACAGGATTAAATATGCAGAAATTGGTTATCTTTCAATATAGTATCAATGAATAAATC 4129
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4130 AAAAATGATGTTAAGAAAACAATTTAATTTTCAACAATGGTCAAGCTTGGTGGCTTGTGCCTGTAATCCCAACA 4203
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4204 CTTTGGGAGTCTGAGGCAGAAAGACTGCTAGAGGCCAGGAGACCAGCCTGGGAAACAGTGAGATCCCATCTCTA 4277
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4278 CAAAAACAAACAAACAAAAAACAACAAGCAAACAAAAAACAGCTGGATGTGATGACACTCATCTGTCGTCTCAG 4351
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4352 CTACTCAGAGGCTGAGGTGTAAGGATGGCTTGAGCCCCAAAGTTCGAAGCTGCAATGAGCTATAACTGGGTCAC 4425
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4426 TGCAATCCAGCCTGGATGACAGAGTTAGACCTTGACTCAAAAAAAACAAAAAAGAAAAGAAAAAAATTGACAGC 4499
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4500 ATCAGAAAGAGTAAAATACCAATATAATTGAGGGTCCAGAAATATTGATCACATTTATCATCAACTGACTTTTG 4573
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4574 AAAATAGTGCTAAGACAATTCAATGGGGGCAAAATAGTCTTTTTCATTAAATGATGCTTGGAAACATGGATATC 4647
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4648 CACATGCAAAATAATGAAATTGGACTCCTACCTCATATTGCATATAAAAATTAACTCAAAGTTGACCTAAGATC 4721
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4722 TAAATGTAAGAGCTAATATTGTAAGTATCTTCAAAGAAAACATGGCGTAAATCTTTCTGACTTTGAATTAGGCA 4795
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4796 ATGATTTCTTAAATAAATGACACTAAAAACACAAGCAACAAAAGAAGAAAATAGGTAAATTAAAATTAAAACCA 4869
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4870 TTTGTGTTTCCAAGGACAATATCAAGAAAGCAAAAATACAACCCACAGAATGAGATAATTTTTTTTAAAATCAT 4943
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4944 GTATTAGTTAAGGGAGGAATTTGTATTTAGAATATGTAAAGAACTGTTACAATAATAATTAAAAGGCATATAAT 5017
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5018 TCAATTTTTAAAAATCAACAAGAGATCTGAATTAACAGTTCTCCAAAGAAGATACACAAAAGGCCAATAAGCAC 5091
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5092 ATGAAAAGGTTCTCAACATCACTAGCCATCAGGGAAATGCAAATGAGATCTACAATGAGATATCACTTAACACT 5165
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5166 CACTGGAATAGATATATAATCAAAGTGATAATATCAAGTGTTGGTGAGGATGCAGAGAAATTGGAACCCTCATG 5239
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5240 CACTGTTGGTGGATACCCACGTGATATAAAAACAAATGTCTACACAAAAACTTGTGCACAGATGTTCTTTGCAG 5313
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5314 CATTATTTATAATAGCCCAAAATTGAAACAGCCCTAATTTCTATCAACTAACAAGTGAATAAACAAAACGTGGC 5387
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5388 ATATCCATACAAGGAATATTATTCAGCAATAAAAAAAGAGATGAAGTACTGATATGCACCACAACATGGAAAAA 5461
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5462 CCTTGAAAACATATCAAGTGAAGAATGCCAGACATGAAAGGCCACATATTATATGATTTCATTTATATGAAATG 5535
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5536 TCCAGAACAGGCGAATATATATAGAGAGAAGGCAGATTAGTGGTTGCTTAGGCTGAAGGGTTGGGGAGGACAAA 5609
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5610 GGGGTGACTGCTAATTAGTATGGGGTTTCTTTTTTGGGGTGATGTAAACGTTGTAAAGTTGATTGTGGTAATGG 5683
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5684 TGGCACAACTCTGAATATACTAAAAACCACTGAATTGTATACTTTGAATGTTTGAACTGTGTGGTATGTAGATT 5757
Query 259 ---------------------------------------- 258
Sbjct 5758 TTATCTCAAGTTGTTATAAAAAATTAAATTACAAATGCAA 5797
