Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13766
Subject:
XR_001749867.2
Aligned Length:
5132
Identities:
126
Gaps:
4993

Alignment

Query    1  ATGGGGGGCGGAGTGAGCGGTGAACACACTGAACAGAATCTGAGATTTAATAAGCCAAATCAACAATGTGGGAA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GTTCGTTTTGTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGCAGTGCAATGGCACGATCTCG  148
                                                 ||||||.|||||||||.||||||.|||..||||||||
Sbjct    1  -------------------------------------TCTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTCG  37

Query  149  GCTCACTGCAAGCTCCGCCTCTCAGGTTCACGCCATTCTCCTGCCTCAGCCTTCCCAGTAGCTGGGACTACAGG  222
            |||||||||||||||||||||...||||||||||||||||||||||||||||.|..||||||||||||||||||
Sbjct   38  GCTCACTGCAAGCTCCGCCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGG  111

Query  223  CGCCCGCCACCATGCCCGGCTAATTTTTTGTATTTT--------------------------------------  258
            |.|||        ||||.||||||||||||||||||                                      
Sbjct  112  CACCC--------GCCCCGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCGTGTTAGCCAGGATGGT  177

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct  178  CTCGATCACCTGACCTCGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCG  251

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct  252  CCCAGCCCTTTTCATGTTCTTTGACTGTTTTTCTATTGACTGTTCATTCTTCCTAGTATTAATAACTTTTTGTA  325

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct  326  TATTTGAGATTAACCATTTTTGCCTATTATGTATTTTATATATATGTCATATGTCATTTTAAATATAATGAAAT  399

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct  400  GTATTAGTCTTTGTGGTTTCTAGTTTTCATGATATGTTTTGAAAGGCTTAATTGTTTTGTTACAAAGTCTGAAC  473

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct  474  TTGAGTTATGAATGCAAATTTCCCCTCTCAAATGCCTAATCTGTTTCCCAAACACCATTTACTTATCCCTTAAG  547

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct  548  GGATTTACTTTTCCCTATTTGATCTATTTCCCACCAATTTTAAAATGTCATCTTTATCATATACTAACTTCCTG  621

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct  622  TATGTTCTTGCGTGTATATGAAACTGGCACATACAGGGAGACTCTTTATTTAACTTTTACTTAAAGTAGGAGGT  695

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct  696  AGGAAAGAGATCTGTTGAAACCATGACAGAGAGTGTTGCAGCGCCTGTCAAAGTTATCCTTGCTTATTTGTAGA  769

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct  770  AAAATTGAACTTTCCATTTTCCTAACTTTCAACTTGCAATTGAATGACACTGATTCTACTAGGAAAAAAGTAAA  843

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct  844  AGCTATACTATTTGATGCCAGATGTATGACTGTGGGCTGATGAGGAAGAACTGGAAACAAATGACAGGTGATTC  917

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct  918  ACTGCTTTGTGTCTGGTGTGCCATGACTCTCTTGAAGGGGGGCAGTGTTGATCTGAATCTTTTTGTCTAATGCT  991

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct  992  TTTTCTTCCTCTGGGAGGGATGCTGAAGAGGGGCAGCTGAAGGAGCAGTCTTAAGCAAATTGGTCATGGCTTTC  1065

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 1066  TTAAATATTGTGATTCGATTGATATGGAACATTTTTTCAGTCTGTGAGAGACTTTTCATTATGGACTAGCTCAT  1139

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 1140  AAAAAACCGTAGATTTAATTTGCCCAGGCTGTTGGTTCTCTTGTGTTTGTTATCATACGTCAGCATGAAACCTT  1213

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 1214  TGGCCTTTGTGGAAGCCTTGTGGAGACCACTGAACAGACTTGGAGCCATATCTGACTCGCCTGCCAGCATTCCT  1287

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 1288  GATGTTCAGTGCCTGTTATTGCCCCTCTCCATGGCATTCTCCTCTGTGGTTATGTGAAAGGAAAATAAATCACT  1361

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 1362  AAGCCAAGGGAAAAATCAAACTGGGAGCTATGTCAGGCAAACCTGCCTCCCATTTTATTCCTAAATAACATAGC  1435

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 1436  TACATACCTCCCTCGCAATTTGCCACAGATCCTCGTCCACAAGGAAATTCACTGTGGACAAAGGACAGACAGAA  1509

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 1510  CTCAAAGTCATCCCTCTGAGACTCACCTGAGACAAATGCATATCTGATTGCTTCCTTTGCCCTATTGTTTATGT  1583

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 1584  AAAAATGCAGATTCACTGAGTCAGACTAAGTTGTGTATTGAGTGGAAGGCTCATCAGGACTCAAAAGAATGCAC  1657

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 1658  CCTAATGTCTTTTATCTACTTCTAACCTGGAAGCCCCCACATTGAGTTGTCCCGCCTTACCTGGCCAAACCAAT  1731

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 1732  GTACATCTTACACATGTTGACTAATGTCTCATGTCTCCCTAAAATGTATAAAAGCAAGCTGTACCCCAGCCACC  1805

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 1806  TTGGGCACATGTCGTCAGGGCCCCCTGAGGCTGTGTCACGGGTGCCTCCTTAATCTTGGCCAAAAAGACAAAAG  1879

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 1880  AAAAACTTACTAAATTGACTGAGACCCGTCTCAGATACTTTGGGTTAACAGTTAGGTTCTACCCTTTGATGCCT  1953

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 1954  GTTTACTTGACTGTGTACTGAGACCAGTTGCTTCACTGAACATTAATACCACAACAGGCAACGATTTTGTTTTG  2027

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2028  TGGTAGGGTACTTGGCCTAGTGCCCATTTTGTAGATGTGTCATTGCTGAGAAGGCAGAACAGTAAGGGGATTTA  2101

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2102  AAAAATTTATACACTGTTATACATTGTCACTGAAATGCCAAATGATTTAGCTTTTGTTATTGTCACTCAGCCTG  2175

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2176  CTTACTTGAGCAGGGTTTGGCAAGCCAGTAATTTAGGGGACTTGTGAGTGAAATACCATGTGAATAAAGTCCAT  2249

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2250  TGTTTCCTTAGTTAGAAAAAGGCTAATTGACTTACATGCTGTTTCTGAGGTGAGGAAGTTCCATTAACAAAACG  2323

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2324  AAACCAAGCCAAAGAATCCAGTGTTTCTCAATTTAACCTAGTCAAATATCTGACATCTCTTTGAGAAATGGATA  2397

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2398  CCCAGTGTCAATAATCCTATGAGGTTAATGGCAGTTAAACAATGGTTTGCTTAAACAGTAACTGGCAAATGCTA  2471

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2472  TAGGGCAAAGCCTATTTGTGGTGTAGGGGGTGCTTGCATCAGTTGATCGGCTATGCTGTATTCACTTGCTTTCT  2545

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2546  GAAATATCTGTGGCAGGGACAAAAGTTCCTATTTGGTGCTCACTTTGGACTTTTATTTTTGTTTCCTTTGCAGT  2619

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2620  TGCAAAGATCTTTTCTGTAGCCTCAGCTGATCTAATGCAGTGGTTCTCAGATTTCAGTGTACATAAATCTTTTG  2693

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2694  GATGCCTGTTAAGCATACAGATTCCTAGGCCCATACCCAGCTATTCTAATTCAGCTGGCCTGGCAACAGGCATG  2767

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2768  TTTAATAAATTTCTTAGGTGATTCTAATGCATGTGTTCCTTTGAAAAAAAATTGGATTGGGTCAGGATGTAGGA  2841

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2842  GAAAAGGAATTGATACCGTTTTATGCATGTGTTATGTACTAGATCTGGTTATGGCAGGATGCCTCATTTCAGTG  2915

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2916  GTTCCCTTCTAAACCCCAAATACCATGTCCACCTGTTCGAGACATAATATCCCTATGTTTGTGAGAACCTGTGC  2989

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 2990  TTAGGGAATGATTCCTTCAGTTTGAAGCTTCTTATTGTCCTTTAAAATGCAGATATGCAGGAGGAGATATCTTT  3063

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3064  TTATGGCTTAGCAGAATGCTGCTCAAAGCGCCAGTCTCTGAAGCTCTTTGTTCCTGACTTGCAACCAGGTACTT  3137

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3138  TAGATTTTCTACATCTAATGGTGGCAAATAAATCCACTAGCTGCCAAATACATGGGAAATGATCTGTGAAAACC  3211

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3212  ACAAGTGGCCCAACAAACTGTACGTCTTCAATTTGACAGCACAAAGGAATTATTGAACAGAAGCTGAAAAAGCA  3285

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3286  TACTGCTTGCATTTCAGGTGTTCTGGGACTCAGTGTTAGAAGCTGTCTGTCTGTAAGAATCTTGCTGTCTCTGC  3359

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3360  CTCATGAAAACAATTGCAGTGATGAGAACCAGTTACTAATGGCATACATCACACATTTCAGCCCATCTTCTGGG  3433

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3434  TGAGCAGGTGGTTGAGCTGTCCCTCGCCTTTGAATCAGGAAGTTAGCATCAAAAATGGTATGTTGCTTTTCCTT  3507

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3508  CCTTTTATTTTATTCAGTCTTGGCATGGTGTGTCACCTAATTAACAAAACAAATGTAATTTTATGTGACTTTAC  3581

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3582  CTCTTTTCATGGCTCATTATTTTCCTCCAATGTAAGAAATTGATGTTCACATCATTTCTTATCCTCCCTCCATC  3655

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3656  TAAAAGGAAATGTCCAATTTGGAAGACATTTTCTTTAGTCTTCTATGAAAGCCCTCTCATGACCTTTCTGCTTG  3729

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3730  CAAACAAAAGAATCATTTCCTGATCAGCACCAGCAGTCAGCTCCTTTACAATGGAACCCATTTAAGGTCAGTGC  3803

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3804  TGGCCTATAATAGAACTACTTAAATAAGTGTAACTTCAAAGAAAAATGGAAATAATGTGTAATATTGAGATGTG  3877

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3878  ATAACATCTTAGAGAAAATAGTTCGTTTTTCTGCTATTTTTAAAGTAGTAGCCAATGGTGTGAAGCGGTTTCTA  3951

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 3952  AAGAAAGCTCACACCACATCCCACCACCAGAAAGCTCCTCCACAACGTGGGCTGGATCCAATTCAGTTCCCAAT  4025

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4026  ATGGCGTTTCAGGAGAGATTGTCATGGATTAGAGGAAGGTATTCAAGATGATAAAGGGCCTAGAAAAAATATCT  4099

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4100  TGTTGGGAGTGTTTAAAAAAAAAAACTTTAGACAAATTAAATTGAACAGATTTTAACTGAGTGAAGAACGATTT  4173

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4174  GTAAATTGAGTAGCTACCCCCCACCTCCCAACCCGAATAGGTTCGGAGTTACTCAGGCATTGCCAGGAGTTCAA  4247

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4248  AAGGATATACGCACAGATAAAGGAAAATGATGTACAGAAAATCGAAGTGAGGTACAGAAAACGGAAGTGAGGTA  4321

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4322  CAGAAGACGGAAGTGAGGTACAGAAAACGGAAGTGAGGTACGGAAACTGCTGGGTTGCTTACAGCTCGCGTTTG  4395

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4396  CCTTCTTAGCACGGTTTGAGAGGTTGGCTGCCTGTGAGTGGTCAAAGTCTGGCTGCTGGGATTAGCTGAGACTT  4469

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4470  AGCTACTTGTTCCAAGAGCAGGTTCCGGTCTGTTTCCACATCCAGTCAGGTTTCAGTTCACTATGTACCCAGAA  4543

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4544  ACCTTGAGGCTGAACTTAAAATATGCGAGGAAGCAGCTTTAGGTGAAACAACGTAGCAGGAGTATAGCAAAAGT  4617

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4618  TCAGTCTGATATAAAGGAGATAGGACAGACGGATGCCTGTGGCCATTGTCCATCTTTGAGAGGGTATTTAAAGG  4691

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4692  CTGGCTTGTTCTGTTTTGCTTCTGAGACATACTAAGTACCGATCGGTAGAAAGTGAAAGCAAATGATGGCAAGG  4765

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4766  ACACCTCATAAATTAGTGAGTCACTCCCCATCATTTGAGAGTATTAAGCAAGAGGGTCAACGATTATTTGTAGG  4839

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4840  ACTATTTTAGTCCTACAAATTTTAAAGGCATTTCCTGTGCTGGGTGGATTTTTATGATTCTTATATGAGCATGC  4913

Query  259  --------------------------------------------------------------------------  258
                                                                                      
Sbjct 4914  TCCGTTTTTCATGATGCTAAAGAGGAAATACTTGCTTTGTTAATTTAAAATGGATTAATTTAAACAATTCTTGG  4987

Query  259  --------------------------  258
                                      
Sbjct 4988  CTGGGCGCAGTGGCTTACGCCTGTAA  5013

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