Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13766
- Subject:
- XR_927326.2
- Aligned Length:
- 5807
- Identities:
- 222
- Gaps:
- 5564
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTCCCGGCCTTCCATCCCAGTTTCTTCTAGGAATTCGGAGCCTCCCCTGCAGCGACTCGGAAGATTCGAGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCGGGGGACAAGTCGGCGCCCCAGAGCGGACGAGTCACCAGGTGTCAAGATGCTGCAAGTACATAGGACTGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGGGCAGGCTGGGGGTCAGCCTCTCCAAGGGTCTTCACCACAAAGCTGTGTTGGCCGTCCGGAGGGAGGATGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAACGCCTGGGAGAGAAGGGCCCCGCTAGCTCCCAAGCACATCAAAGGCATCACCAATCTGGGATACAAGGTCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGATACAGCCTTCGAATCGGCGGGCCATTCATGATAAGGACTATGTCAAAGCTGGTGGCATTCTTCAGGAGGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTCTGAAGCTTGTCTAATTTTAGGAGTTAAAAGACCTCCAGAGGAAAAATTAATGTCCAGGAAGACTTATGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATTTTTCTCCCACACAATAAAAGCTCAGGAGGCCAATATGGGCTTGTTGGATGAGATTCTAAAACAGGAAATTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCTTATTGATTATGAGAAAATGGTGGATCATAGAGGAGTACGGGTAGTGGCATTTGGACAGTGGGCTGGTGTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCAGGAATGATCAACATTTTACATGGAATGGGTTTAAGGCTCCTTGCTTTGGGACATCACACACCTTTTATGCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CATTGGCATGGCTCATAACTACAGGAATAGCAGTCAGGCTGTGCAAGCTGTCCGTGATGCTGGCTATGAAATAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTTTGGGTTTGATGCCTAAGTCAATAGGACCCTTAACATTTGTGTTCACAGGAACTGGTAATGTTTCTAAGGGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCCCAAGCAATCTTTAATGAGCTACCTTGTGAATATGTGGAGCCCCATGAATTAAAAGAAGTTTCCCAAACTGG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGACCTCAGAAAAGTGTATGGGACGGTGTTAAGTCGTCATCATCATCTTGTCAGGAAAACAGATGCTGTGTATG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ATCCTGCAGAGTATGACAAACATCCGGAGCGCTACATAAGTCGTTTTAATACTGATATTGCACCCTATACAACT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGCTTAATTAATGGAATCTACTGGGAACAAAACACTCCTCGCCTCCTAACCCGCCAAGATGCTCAGAGTCTCCT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GGCTCCGGGCAAGTTCTCACCTGCTGGTGTGGAAGGCTGCCCTGCATTACCACACAAACTCGTGGCAATATGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACATTTCAGCTGACACAGGAGGGTCTATAGAGTTTATGACTGAGTGTACAACAATAGAGCATCCCTTTTGCATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TATGATGCAGACCAGCATATTATTCATGACAGTGTTGAAGGCTCGGGGATCCTGATGTGTTCCATTGACAATTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCCGGCACAGCTCCCAATTGAAGCTACAGAATGCTTTGGAGACATGCTTTACCCTTATGTTGAAGAAATGATAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TATCAGACGCGACACAGCCTCTTGAAAGTCAGAATTTTTCTCCTGTGGTGAGAGATGCAGTGATTACATCCAAC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GGTACATTACCTGATAAATATAAATATATCCAGACACTCCGGGAGAGCAGGGAACGTGCTCAGTCACTTTCAAT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGGCACCAGGAGAAAGGTTTTGGTTCTTGGATCTGGCTACATATCTGAGCCTGTATTAGAATATTTATCAAGAG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ATGGCAATATAGAAATAACAGTAGGATCTGACATGAAGAATCAAATTGAACAGTTAGGCAAGAAATATAATATT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AATCCTGTTAGCATGGACATTTGTAAACAAGAAGAGAAGCTGGGCTTCTTGGTGGCAAAACAGGATCTTGTCAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CAGCTTGTTGCCTTATGTATTGCACCCTCTTGTGGCCAAGGCCTGCATCACAAACAAAGTTAACATGGTCACTG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CAAGCTACATCACACCAGCACTAAAAGAATTGGAAAAGAGTTTTCCTTTTTCCTCTTTCCACCTGCTGCAGTGT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 GGAAGATGCTGGCATCACAATCATTGGTGAATTGGGATTGGACCCTGGTCTGGATCACATGTTAGCAATGGAAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 CAATAGATAAAGCCAAGGAAGTGGGAGCCACGATTGAATCATATATTTCCTACTGTGGTGGGCTTCCAGCCCCT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 GAACATTCAAACAATCCATTGAGATATAAATTTAGCTGGAGTCCAGTGGGAGTTTTGATGAATGTAATGCAGTC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGCCACCTATCTGCTCGATGGAAAGGTTGTGAATGTTGCAGGAGGCATCTCCTTTCTTGATGCCGTTACGTCCA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TGGATTTTTTTCCAGGATTAAATTTGGAAGGCTATCCTAACAGAGACAGTACGAAATATGCTGAGATTTATGGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ATTTCTTCTGCTCACACTTTGTTGCGGGGGACACTGAGATATAAGGGATATATGAAAGCTTTGAATGGATTTGT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AAAATTAGGTCTTATAAACAGAGAAGCGCTTCCTGCCTTTAGACCTGAGGCCAACCCTCTCACCTGGAAACAAC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TCCTCTGTGACCTAGTTGGGATTTCACCCTCCTCTGAGCATGATGTGTTGAAGGAAGCTGTTCTTAAGAAACTA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GGAGGAGACAATACCCAGTTGGAGGCTGCTGAATGGTCCTGAAGAAAAAGATATGATTGTGATGAGAGACAGCT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TTGGAATCAGACATCCTTCTGGACATTTAGAACATAAAACGATTGATCTTGTGGCTTATGGGGACATCAATGGC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTTTCAGCCATGGCTAAAACCGTGGGGTTACCCACCGCCATGGCAGCCAAAATGTTGCTTGATGGTGAAATTGG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AGCCAAAGGCCTAATGGGGCCCTTTTCAAAGGAGATCTATGGACCAATATTGGAGCGAATTAAAGCAGAAGGCA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TTATATATACTACACAGAGTACAATTAAACCATAATTGGGAATTATATTTTGTTTTTTTCTTCCCAGGCAATAC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ACCTCTGAACATGTGTGTGATAAATGGGTTTGCTAATGTGCTGTTTTAAAGTATAAAGCATAATATGTTTTGGT 2960
Query 1 -----------------------------------------ATGG--------GGGGC-GGAG-TG--AGCGGT 21
|||| ||..| |||| || |||
Sbjct 2961 TAACACAATGTACTTTTTGAACTATAAATCTTTATTTTAATATGGAAATGTTTGGAACAGGAGATGCAAGC--- 3031
Query 22 GAACACACTGAACAGAATCTGAGATTTAATAAGCCAA-----------ATCAACA---ATGTGGGAAG------ 75
|||| |||||| ||..||||||||..|.| ||.||.| |||| |.|||
Sbjct 3032 -----CACT-AACAGA----GAACTTTAATAATTCTACCCTGTATTTTATAAATACGTATGT-GAAAGTGATGA 3094
Query 76 ----------------------------------TTCGTTTTGTTTTTT--------------TTTTTTGAGAC 101
||| ||||||||||| ||||||||||.
Sbjct 3095 TCATGCTATTTGTTAATTTATTGTGCCACTTTTTTTC-TTTTGTTTTTTTTTTGTTGTTGTTGTTTTTTGAGAT 3167
Query 102 GGAGTCTCGCTCTGTCACCCAGGCTGCAGTGCAATGGCACGATCTCGGCTCACTGCAAGCTCCGCCTCTCAGGT 175
||||||||||||||||||||||||||.||||||.||||.|||||||||||||||||||||||||||||...|||
Sbjct 3168 GGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCTGGGT 3241
Query 176 TCACGCCATTCTCCTGCCTCAGCCTTCCCAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCT-AATTT 248
|||||||||||||||||||||||||.||.|||||||||||||||||||.||||||||||.|||||||| |||||
Sbjct 3242 TCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACCACGCCCGGCTAAATTT 3315
Query 249 TTTGTATTTT---------------------------------------------------------------- 258
||||||||||
Sbjct 3316 TTTGTATTTTTCAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGTCCACTTTTTTCTTAAATGAACATATT 3389
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3390 GTCTTATAACCAGCAAATGAAGTTTTACTTTTTTAGTCAGAAAAAATTTCGTCATAAAGCTATATTTTTATATT 3463
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3464 TTTAAAATTGATACAGTTAGATACCTTCAGATTACCTAAGTTAAGTTTTTGCCAAAATGCTATTTTATGCCCTT 3537
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3538 TTTGTAAAGTTATGATTTATTTTGTAAATATAGTTCCTTATAGTTTTCTCTTGAGTGTTTGGACATGAGAATAG 3611
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3612 ATAAGATTAAATTACAATTTACAAGATCACTTCATTAGGCACAGGAAAAGTATTTAACAAAATTCAACACCCTT 3685
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3686 TCACAATAAAAAATAAAAAATAAAAAACCCTCAACAAACTAGGAATAGAAGGAAACTTCCTCAACCTGATAAAG 3759
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3760 GGCATCTATGAAGAACCCATGGTTAGCATCATACTTAATGGTGAAGGACTGGATTATTTCCCCCTGAGATCAGA 3833
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3834 AACAAGACAAGGATGTCTGCTTTGGCCATTTCTATTCAACTTGTACTGGACAGTCAAGAAAGGGCAATTAGGCA 3907
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3908 AGAAAATAAAATAAAAGTCATCTAGGTTGGAAAGGAAGAAGTATAACTAAATAGAGATGGGAGACGATATGGTG 3981
Query 259 -------------------------------------------------------------------------- 258
Sbjct 3982 GTTTTGTGCATAGTAATCCAAGGGAAAACTATAGAAAATCCAAAGGCATGATTTATTAATAAATAAATTCAGCA 4055
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4056 AAGTTACAGGATACAGGATTAAATATGCAGAAATTGGTTATCTTTCAATATAGTATCAATGAATAAATCAAAAA 4129
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4130 TGATGTTAAGAAAACAATTTAATTTTCAACAATGGTCAAGCTTGGTGGCTTGTGCCTGTAATCCCAACACTTTG 4203
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4204 GGAGTCTGAGGCAGAAAGACTGCTAGAGGCCAGGAGACCAGCCTGGGAAACAGTGAGATCCCATCTCTACAAAA 4277
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4278 ACAAACAAACAAAAAACAACAAGCAAACAAAAAACAGCTGGATGTGATGACACTCATCTGTCGTCTCAGCTACT 4351
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4352 CAGAGGCTGAGGTGTAAGGATGGCTTGAGCCCCAAAGTTCGAAGCTGCAATGAGCTATAACTGGGTCACTGCAA 4425
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4426 TCCAGCCTGGATGACAGAGTTAGACCTTGACTCAAAAAAAACAAAAAAGAAAAGAAAAAAATTGACAGCATCAG 4499
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4500 AAAGAGTAAAATACCAATATAATTGAGGGTCCAGAAATATTGATCACATTTATCATCAACTGACTTTTGAAAAT 4573
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4574 AGTGCTAAGACAATTCAATGGGGGCAAAATAGTCTTTTTCATTAAATGATGCTTGGAAACATGGATATCCACAT 4647
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4648 GCAAAATAATGAAATTGGACTCCTACCTCATATTGCATATAAAAATTAACTCAAAGTTGACCTAAGATCTAAAT 4721
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4722 GTAAGAGCTAATATTGTAAGTATCTTCAAAGAAAACATGGCGTAAATCTTTCTGACTTTGAATTAGGCAATGAT 4795
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4796 TTCTTAAATAAATGACACTAAAAACACAAGCAACAAAAGAAGAAAATAGGTAAATTAAAATTAAAACCATTTGT 4869
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4870 GTTTCCAAGGACAATATCAAGAAAGCAAAAATACAACCCACAGAATGAGATAATTTTTTTTAAAATCATGTATT 4943
Query 259 -------------------------------------------------------------------------- 258
Sbjct 4944 AGTTAAGGGAGGAATTTGTATTTAGAATATGTAAAGAACTGTTACAATAATAATTAAAAGGCATATAATTCAAT 5017
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5018 TTTTAAAAATCAACAAGAGATCTGAATTAACAGTTCTCCAAAGAAGATACACAAAAGGCCAATAAGCACATGAA 5091
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5092 AAGGTTCTCAACATCACTAGCCATCAGGGAAATGCAAATGAGATCTACAATGAGATATCACTTAACACTCACTG 5165
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5166 GAATAGATATATAATCAAAGTGATAATATCAAGTGTTGGTGAGGATGCAGAGAAATTGGAACCCTCATGCACTG 5239
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5240 TTGGTGGATACCCACGTGATATAAAAACAAATGTCTACACAAAAACTTGTGCACAGATGTTCTTTGCAGCATTA 5313
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5314 TTTATAATAGCCCAAAATTGAAACAGCCCTAATTTCTATCAACTAACAAGTGAATAAACAAAACGTGGCATATC 5387
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5388 CATACAAGGAATATTATTCAGCAATAAAAAAAGAGATGAAGTACTGATATGCACCACAACATGGAAAAACCTTG 5461
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5462 AAAACATATCAAGTGAAGAATGCCAGACATGAAAGGCCACATATTATATGATTTCATTTATATGAAATGTCCAG 5535
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5536 AACAGGCGAATATATATAGAGAGAAGGCAGATTAGTGGTTGCTTAGGCTGAAGGGTTGGGGAGGACAAAGGGGT 5609
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5610 GACTGCTAATTAGTATGGGGTTTCTTTTTTGGGGTGATGTAAACGTTGTAAAGTTGATTGTGGTAATGGTGGCA 5683
Query 259 -------------------------------------------------------------------------- 258
Sbjct 5684 CAACTCTGAATATACTAAAAACCACTGAATTGTATACTTTGAATGTTTGAACTGTGTGGTATGTAGATTTTATC 5757
Query 259 ----------------------------------- 258
Sbjct 5758 TCAAGTTGTTATAAAAAATTAAATTACAAATGCAA 5792
