Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- NR_028455.2
- Aligned Length:
- 6852
- Identities:
- 245
- Gaps:
- 6570
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGGGGGCCGTTGGCTCCAGACAAATAAACATGGAGTCCATCTTCCACGAGAAACAAGAAGGCTCACTTTGTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCAACATTGCCTGAATAACTTATTGCAAGGAGAATATTTTAGCCCTGTGGAATTATCCTCAATTGCACATCAGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGGATGAGGAGGAGAGGATGAGAATGGCAGAAGGAGGAGTTACTAGTGAAGATTATCGCACGTTTTTACAGCAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTTCTGGAAATATGGATGACAGTGGTTTTTTCTCTATTCAGAAATGAAAGATCATTTATATGCAATTATAAGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AACACTGGTTTACAGTTAGAAAATTAGGAAAACAGTGGTTTAACTTGAATTCTCTCTTGACGGGTCCAGAATTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATATCAGATACATATCTTGCACTTTTCTTGGCTCAATTACAACAGGAAGGTTATTCTATATTTGTCGTTAAGGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGATCTGCCAGATTGCGAAGCTGACCAACTCCTGCAGATGATTAGGGTCCAACAGATGCATCGACCAAAACTTA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTGGAGAAGAATTAGCACAACTAAAAGAGCAAAGAGTCCATAAAACAGACCTGGAACGAGTGTTAGAAGCAAAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GATGGCTCAGGAATGTTAGACGAAGATGAGGAGGATTTGCAGAGGGCTCTGGCACTAAGTCGCCAAGAAATTGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CATGGAAGATGAGGAAGCAGATCTCCGCAGGGCTATTCAGCTAAGTATGCAAGGTAGTTCCAGAAACATATCTC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAGATATGACACAGACATCAGGTACAAATCTTACTTCAGAAGAGCTTCGGAAGAGACGAGAAGCCTACTTTGAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AATCACAACTCAGAAGTAGATGAAGGAAAATTCTGATCAGCTGACATCCTCTTAATACAGCAGCAAAAGCAGCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ACAGCAGCAGCAGCAGCAGCAGCAGGGGGACCTATCAGGACAGAGTTCACATCCATGTGAAAGGCCAGCCACCA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GTTCAGGAGCACTTGGGAGTGATCTAGGTGATGCTATGAGTGAAGAAGACATGCTTCAGGCAGCTGTGACCATG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TCTTTAGAAACTGTCAGAAATGATTTGAAAACAGAAGGAAAAAAATAATACCTTTAAAAAATAATTTAGATATT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CATACTTTCCAACATTATCCTGTGTGATTACAGCATAGGGTCCACTTTGGTAATGTGTCAAAGAGATGAGGAAA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TAAGACTTTTAGCGGTTTGCAAACAAAATGATGGGAAAGTGGAACAATGCGTCGGTTGTAGGACTAAATAATGA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TCTTCCAAATATTAGCCAAAGAGGCATTCAGCAATTAAAGACATTTAAAATAGTTTTCTAAATGTTTCTTTTTC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTTTTTGAGTGTGCAATATGTAACATGTCTAAAGTTAGGGCATTTTTCTTGGATCTTTTTGCAGACTAGCTAAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TAGCTCTCGCCTCAGGCTTTTTCCATATAGTTTGTTTTCTTTTTCTGTCTTGTAGGTAAGTTGGCTCACATCAT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GTAATAGTGGCTTTCATTTCTTATTAACCAAATTAACCTTTCAGGAAAGTATCTCTACTTTCCTGATGTTGATA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ATAGTAATGGTTCTAGAAGGATGAACAGTTCTCCCTTCAACTGTATACCGTGTGCTCCAGTGTTTTCTTGTGTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GTTTTCTCTGATCACAACTTTTCTGCTACCTGGTTTTCATTATTTTCCCACAATTCTTTTGAAAGATGGTAATC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTTTCTGAGGTTTAGCGTTTTAAGCCCTACGATGGGATCATTATTTCATGACTGGTGCGTTCCTAAACTCTGAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ATCAGCCTTGCACAAGTACTTGAGAATAAATGAGCATTTTTTAAAATGTGTGAGCATGTGCTTTCCCAGATGCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTATGAATGTCTTTTCACTTATATCAAAACCTTACAGCTTTGTTGCAACCCCTTCTTCCTGCGCCTTATTTTTT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCTTTCTTCTCCAATTGAGAAAACTAGGAGAAGCATAGTATGCAGGCAAGTCTCCTTCTGTTAGAAGACTAAAC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATACGTACCCACCATGAATGTATGATACATGAAATTTGGCCTTCAATTTTAATAGCAGTTTTATTTTATTTTTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CTCCTATGACTGGAGCTTTGTGTTCTCTTTACAGTTGAGTCATGGAATGTAGGTGTCTGCTTCACATCTTTTAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TAGGTATAGCTTGTCAAAGATGGTGATCTGGAACATGAAAATAATTTACTAATGAAAATATGTTTAAATTTATA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTGTGATTTGACACTTGCATCATGTTTAGATAGCTTAAGAACAATGGAAGTCACAGTACTTAGTGGATCTATAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 ATAAGAAAGTCCATAGTTTTGATAAATATTCTCTTTAATTGAGATGTACAGAGAGTTTCTTGCTGGGTCAATAG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GATAGTATCATTTTGGTGAAAACCATGTCTCTGAAATTGATGTTTTAGTTTCAGTGTTCCCTATCCCTCATTCT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 CCATCTCCTTTTGAAGCTCTTTTGAATGTTGAATTGTTCATAAGCTAAAATCCAAGAAATTTCAGCTGACAACT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TCGAAAATTATAATATGGTATATTGCCCTCCTGGTGTGTGGCTGCACACATTTTATCAGGGAAAGTTTTTTGAT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CTAGGATTTATTGCTAACTAACTGAAAAGAGAAGAAAAAATATCTTTTATTTATGATTATAAAATAGCTTTTTC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTCGATATAACAGATTTTTTAAGTCATTATTTTGTGCCAATCAGTTTTCTGAAGTTTCCCTTACACAAAAGGAT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AGCTTTATTTTAAAATCTAAAGTTTCTTTTAATAGTTAAAAATGTTTCAGAAGAATTATAAAACTTTAAAACTG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CAAGGGATGTTGGAGTTTAGTACTACTCCCTCAAGATTTAAAAAGCTAAATATTTTAAGACTGAACATTTATGT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TAATTATTACCAGTGTGTTTGTCATATTTTCCATGGATATTTGTTCATTACCTTTTTCCATTGAAAAGTTACAT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TAAACTTTTCATACACTTGAATTGATGAGCTACCTAATATAAAAATGAGAAAACCAATATGCATTTTAAAGTTT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TAACTTTAGAGTTTATAAAGTTCATATATACCCTAGTTAAAGCACTTAAGAAAATATGGCATGTTTGACTTTTA 3108
Query 1 ------------------------------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGT 32
|.|||||||||||.||||.||||||||||||.
Sbjct 3109 GTTCCTAGAGAGTTTTTGTTTTTGTTTTTGTTTTTTTTTGAGACGGAGTCTTGCTATGTCTCCCAGGCTGGAGG 3182
Query 33 GCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGA 106
|||.||||..||||||..||||||.||||.||..|.|.||.|||||||||.|||||||||.||||||||||.||
Sbjct 3183 GCAGTGGCATGATCTCGGCTCACTACAACTTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCAGA 3256
Query 107 GTAGCTGGGATTACAGGTGCCCACCACCACAGCTGGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTTTACCA 180
|||||||||||||||||.|||||||||||||.|.|||..||||||||||||||.||||||||..|||||.|.||
Sbjct 3257 GTAGCTGGGATTACAGGCGCCCACCACCACACCCGGCAGATTTTTGTATTTTTGGTAGAGACGCGGTTTCATCA 3330
Query 181 T-ATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATT 253
| .||||||||.|||||||||||||||||||||||||||.|||||||||||||||.||||||||||.|||||||
Sbjct 3331 TGTTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCCTTGGCCTCCCAAAGTGTTGGGATT 3404
Query 254 ATAGGAGTGAGCCACTGCGCCTGGCCA---------TT------------------------------------ 282
|.|||..|||||||||||||||||||| ||
Sbjct 3405 ACAGGCATGAGCCACTGCGCCTGGCCAGCTAGAGAGTTTTTAAAGCAGAGCTGAGCACACACTGGATGCGTTTG 3478
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3479 AATGTGTTTGTGTAGTTTGTTGTGAAATTGTTACATTTAGCAGGCAGATCCAGAAGCACTAGTGAACTGTCATC 3552
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3553 TTGGTGGGGTTGGCTTAAATTTAATTGACTGTTTAGATTCCATTTCTTAATTGATTGGCCAGTATGAAAAGATG 3626
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3627 CCAGTGCAAGTAACCATAGTATCAAAAAAGTTAAAAATTATTCAAAGCTATAGTTTATACATCAGGTACTGCCA 3700
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3701 TTTACTGTAAACCACCTGCAAGAAAGTCAGGAACAACTAAATTCACAAGAACTGTCCTGCTAAGAAGTGTATTA 3774
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3775 AAGATTTCCATTTTGTTTTACTAATTGGGAACATCTTAATGTTTAATATTTAAACTATTGGTATCATTTTTCTA 3848
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3849 ATGTATAATTTGTATTACTGGGATCAAGTATGTACAGTGGTGATGCTAGTAGAAGTTTAAGCCTTGGAAATACC 3922
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3923 ACTTTCATATTTTCAGATGTCATGGATTTAATGAGTAATTTATGTTTTTAAAATTCAGAATAGTTAATCTCTGA 3996
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3997 TCTAAAACCATCAATCTATGTTTTTTACGGTAATCATGTAAATATTTCAGTAATATAAACTGTTTGAAAAGGCT 4070
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4071 GCTGCAGGTAAACTCTATACTAGGATCTTGGCCAAATAATTTACAATTCACAGAATATTTTATTTAAGGTGGTG 4144
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4145 CTTTTTTTTTTTGTCCTTAAAACTTGATTTTTCTTAACTTTATTCATGATGCCAAAGTAAATGAGGAAAAAAAC 4218
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4219 TCAAAACCAGTTGAGTATCATTGCAGACAAAACTACCAGTAGTCCATATTGTTTAATATTAAGTTGAATAAAAT 4292
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4293 AAATTTTATTTCAGTCAGAGCCTAAATCACATTTTGATTGTCTGAATTTTTGATACTATTTTTAAAATCATGCT 4366
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4367 AGTGGCGGCTGGGCGTGGTAGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCCGAAGTGGGTGGATCACGAGG 4440
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4441 TCGGGAGTTCGAGACCAGCTTGGCCAAAATGGTGAAACCCCATCTGTACTAAAAACTACAAAAATTAGCTGGGC 4514
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4515 GCGGTGGCAGGTGCCTGTAATCCCAGCTACCTGGGAGTCTGAGGCAGGAGAATTGCTTGAACCCTGGCGACAGA 4588
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4589 GGATGCAGTGAGCCAAGATGGTGCCACTGTACTCCAGACTGGGCGACAGAGTGAGACTCTGTCTCAAAAAAAAA 4662
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4663 AAAAAAATCATGCTAGTGCCAAGAGCTACTAAATTCTTAAAACCGGCCCATTGGACCTGTACAGATAAAAAATA 4736
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4737 GATTCAGTGCATAATCAAAATATGATAATTTTAAAATCTTAAGTAGAAAAATAAATCTTGATGTTTTAAATTCT 4810
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4811 TACGAGGATTCAATAGTTAATATTGATGATCTCCCGGCTGGGTGCAGTGGCTCACGCCTGTAATCCCAGCAGTT 4884
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4885 CTGGAGGCTGAGGTGGGCGAATCACTTCAGGCCAGGAGTTCAAGACCAGTCTGGGCAACATGGTGAAACCTCGT 4958
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4959 TTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTTGCACACACTTGTAATCCCAGCTACTCAGGAGGCTAAGA 5032
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5033 ATCGCATGAGCCTAGGAGGCAGAGGTTGCAGAGTGCCAAGGGCTCACCACTGCATTCCAGCCTGCCCAACAGAG 5106
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5107 TGAGACACTGTTTCTGAAAAAAAAAAATATATATATATATATATATATGTGTGTATATATATATGTATATATAT 5180
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5181 ATGACTTCCTATTAAAAACTTTATCCCAGTCGGGGGCAGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGC 5254
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5255 TGAGGCAGGTGGATCACCTGAAGTCCGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTA 5328
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5329 AAAATACAAAACTTAAGCCAGGTATGGTGGCGGGCACCTGTAATCCCAGTTACTTGGGAGGCTGAGGCAGGAGA 5402
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5403 ATCGTTTAAACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATCGTGCCATTGCACTCTAGCCTGGGCAACAAGA 5476
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5477 GTAAAACTCCATCTTAAAGGTTTGTTTGTTTTTTTTTAATCCGGAAACGAAGAGGCGTTGGGCCGCTATTTTCT 5550
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5551 TTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTCTGAGACGGAGTCTAGCTCTGCTGCCCAGGCTGGAGTACA 5624
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5625 ATGACACGATGTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTA 5698
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5699 CCTGGGATTACAGGCACCTGCCACTACACCTGGCGAATATTTGTTTTTTTTAGTAGAGACGGGCTTTTACCATG 5772
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5773 TTAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTG 5846
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5847 CAGGCCACCACACCCGGCCTTGGGCCACTGTTTTCAAAGTGAATTGTTTGTTGTATCGAGTCCTTAAGTATGGA 5920
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5921 TATATATGTGACCCTAATTAAGAACTACCAGATTGGATCAACTAATCATGTCAGCAATGTAAATAACTTTATTT 5994
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5995 TTCATATTCAAAATAAAAACTTTCTTTTATTTCTGGCCCCTTTATAACCAGCATCTTTTTGCTTTAAAAAATGA 6068
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6069 CCTGGCTTTGTATTTTTTTAGTCTTAAACATAATAAAAATATTTTTGTTCTAATTTGCTTTCATGAGTGAAGAT 6142
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6143 TATTGACATCGTTGGTAAATTCTAGAATTTTGATTTTGTTTTTTAATTTGAAGAAAATCTTTGCTATTATTATT 6216
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6217 TTTTCCAAGTGGTCTGGCATTTTAAGAATTAGTGCTAATAACGTAACTTCTAAATTTGTCGTAATTGGCATGTT 6290
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6291 TAATAGCATATCAAAAAACATTTTAAGCCTGTGGATTCATAGACAAAGCAATGAGAAACATTAGTAAAATATAA 6364
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6365 ATGGATATTCCTGATGCATTTAGGAAGCTCTCAATTGTCTCTTGCATAGTTCAAGGAATGTTTTCTGAATTTTT 6438
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6439 TTAATGCTTTTTTTTTTTTTGAAAGAGGAAAACATACATTTTTAAATGTGATTATCTAATTTTTACAACACTGG 6512
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6513 GCTATTAGGAATAACTTTTTAAAAATTACTGTTCTGTATAAATATTTGAAATTCAAGTACAGAAAATATCTGAA 6586
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6587 ACAAAAAGCATTGTTGTTTGGCCATGATACAAGTGCACTGTGGCAGTGCCGCTTGCTCAGGACCCAGCCCTGCA 6660
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6661 GCCCTTCTGTGTGTGCTCCCTCGTTAAGTTCATTTGCTGTTATTACACACACAGGCCTTCCTGTCTGGTCGTTA 6734
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6735 GAAAAGCCGGGCTTCCAAAGCACTGTTGAACACAGGATTCTGTTGTTAGTGTGGATGTTCAATGAGTTGTATTT 6808
Query 283 -------------------------------------------- 282
Sbjct 6809 TAAATATCAAAGATTATTAAATAAAGATAATGTTTGCTTTTCTA 6852
