Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- NR_028467.2
- Aligned Length:
- 6799
- Identities:
- 245
- Gaps:
- 6517
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGGGGGCCGTTGGCTCCAGACAAATAAACATGGAGTCCATCTTCCACGAGAAACAAGAAGGCTCACTTTGTGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCAACATTGCCTGAATAACTTATTGCAAGGAGAATATTTTAGCCCTGTGGAATTATCCTCAATTGCACATCAGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGGATGAGGAGGAGAGGATGAGAATGGCAGAAGGAGGAGTTACTAGTGAAGATTATCGCACGTTTTTACAGCAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTTCTGGAAATATGGATGACAGTGGTTTTTTCTCTATTCAGTGGTTTAACTTGAATTCTCTCTTGACGGGTCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGAATTAATATCAGATACATATCTTGCACTTTTCTTGGCTCAATTACAACAGGAAGTCACTCAATGAGACGGCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTTCCAGTCTTACAATGGAGAAAGTGAGGCTCAGAGACTTTAAGTAACTTACCTTAGACGACTTTACTAGTAAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGATCTGCCAGATTGCGAAGCTGACCAACTCCTGCAGATGATTAGGGTCCAACAGATGCATCGACCAAAACTT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATTGGAGAAGAATTAGCACAACTAAAAGAGCAAAGAGTCCATAAAACAGACCTGGAACGAGTGTTAGAAGCAAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGATGGCTCAGGAATGTTAGACGAAGATGAGGAGGATTTGCAGAGGGCTCTGGCACTAAGTCGCCAAGAAATTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ACATGGAAGATGAGGAAGCAGATCTCCGCAGGGCTATTCAGCTAAGTATGCAAGGTAGTTCCAGAAACATATCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAAGATATGACACAGACATCAGGTACAAATCTTACTTCAGAAGAGCTTCGGAAGAGACGAGAAGCCTACTTTGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAAACAGCAGCAAAAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGGGGGACCTATCAGGACAGAGTTCACATC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CATGTGAAAGGCCAGCCACCAGTTCAGGAGCACTTGGGAGTGATCTAGGTGATGCTATGAGTGAAGAAGACATG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTTCAGGCAGCTGTGACCATGTCTTTAGAAACTGTCAGAAATGATTTGAAAACAGAAGGAAAAAAATAATACCT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTAAAAAATAATTTAGATATTCATACTTTCCAACATTATCCTGTGTGATTACAGCATAGGGTCCACTTTGGTAA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TGTGTCAAAGAGATGAGGAAATAAGACTTTTAGCGGTTTGCAAACAAAATGATGGGAAAGTGGAACAATGCGTC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GGTTGTAGGACTAAATAATGATCTTCCAAATATTAGCCAAAGAGGCATTCAGCAATTAAAGACATTTAAAATAG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTTTCTAAATGTTTCTTTTTCTTTTTTGAGTGTGCAATATGTAACATGTCTAAAGTTAGGGCATTTTTCTTGGA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TCTTTTTGCAGACTAGCTAATTAGCTCTCGCCTCAGGCTTTTTCCATATAGTTTGTTTTCTTTTTCTGTCTTGT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGGTAAGTTGGCTCACATCATGTAATAGTGGCTTTCATTTCTTATTAACCAAATTAACCTTTCAGGAAAGTATC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TCTACTTTCCTGATGTTGATAATAGTAATGGTTCTAGAAGGATGAACAGTTCTCCCTTCAACTGTATACCGTGT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GCTCCAGTGTTTTCTTGTGTTGTTTTCTCTGATCACAACTTTTCTGCTACCTGGTTTTCATTATTTTCCCACAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTCTTTTGAAAGATGGTAATCTTTTCTGAGGTTTAGCGTTTTAAGCCCTACGATGGGATCATTATTTCATGACT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GGTGCGTTCCTAAACTCTGAAATCAGCCTTGCACAAGTACTTGAGAATAAATGAGCATTTTTTAAAATGTGTGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GCATGTGCTTTCCCAGATGCTTTATGAATGTCTTTTCACTTATATCAAAACCTTACAGCTTTGTTGCAACCCCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TCTTCCTGCGCCTTATTTTTTCCTTTCTTCTCCAATTGAGAAAACTAGGAGAAGCATAGTATGCAGGCAAGTCT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCTTCTGTTAGAAGACTAAACATACGTACCCACCATGAATGTATGATACATGAAATTTGGCCTTCAATTTTAAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AGCAGTTTTATTTTATTTTTTCTCCTATGACTGGAGCTTTGTGTTCTCTTTACAGTTGAGTCATGGAATGTAGG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TGTCTGCTTCACATCTTTTAGTAGGTATAGCTTGTCAAAGATGGTGATCTGGAACATGAAAATAATTTACTAAT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GAAAATATGTTTAAATTTATACTGTGATTTGACACTTGCATCATGTTTAGATAGCTTAAGAACAATGGAAGTCA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CAGTACTTAGTGGATCTATAAATAAGAAAGTCCATAGTTTTGATAAATATTCTCTTTAATTGAGATGTACAGAG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGTTTCTTGCTGGGTCAATAGGATAGTATCATTTTGGTGAAAACCATGTCTCTGAAATTGATGTTTTAGTTTCA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 GTGTTCCCTATCCCTCATTCTCCATCTCCTTTTGAAGCTCTTTTGAATGTTGAATTGTTCATAAGCTAAAATCC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AAGAAATTTCAGCTGACAACTTCGAAAATTATAATATGGTATATTGCCCTCCTGGTGTGTGGCTGCACACATTT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TATCAGGGAAAGTTTTTTGATCTAGGATTTATTGCTAACTAACTGAAAAGAGAAGAAAAAATATCTTTTATTTA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 TGATTATAAAATAGCTTTTTCTTCGATATAACAGATTTTTTAAGTCATTATTTTGTGCCAATCAGTTTTCTGAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GTTTCCCTTACACAAAAGGATAGCTTTATTTTAAAATCTAAAGTTTCTTTTAATAGTTAAAAATGTTTCAGAAG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AATTATAAAACTTTAAAACTGCAAGGGATGTTGGAGTTTAGTACTACTCCCTCAAGATTTAAAAAGCTAAATAT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TTTAAGACTGAACATTTATGTTAATTATTACCAGTGTGTTTGTCATATTTTCCATGGATATTTGTTCATTACCT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTTTCCATTGAAAAGTTACATTAAACTTTTCATACACTTGAATTGATGAGCTACCTAATATAAAAATGAGAAAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CCAATATGCATTTTAAAGTTTTAACTTTAGAGTTTATAAAGTTCATATATACCCTAGTTAAAGCACTTAAGAAA 3034
Query 1 ---------------------------------------------------------------ATGGAGTCTTG 11
|.|||||||||
Sbjct 3035 ATATGGCATGTTTGACTTTTAGTTCCTAGAGAGTTTTTGTTTTTGTTTTTGTTTTTTTTTGAGACGGAGTCTTG 3108
Query 12 CTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGAT 85
||.||||.||||||||||||.|||.||||..||||||..||||||.||||.||..|.|.||.|||||||||.||
Sbjct 3109 CTATGTCTCCCAGGCTGGAGGGCAGTGGCATGATCTCGGCTCACTACAACTTCCACCTCCCGGGTTCAAGCAAT 3182
Query 86 TCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCACCACCACAGCTGGCTAATTTTTGTATTTTT 159
|||||||.||||||||||.|||||||||||||||||||.|||||||||||||.|.|||..||||||||||||||
Sbjct 3183 TCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCGCCCACCACCACACCCGGCAGATTTTTGTATTTTT 3256
Query 160 AGTAGAGACTGGGTTTTACCAT-ATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTG 232
.||||||||..|||||.|.||| .||||||||.|||||||||||||||||||||||||||.|||||||||||||
Sbjct 3257 GGTAGAGACGCGGTTTCATCATGTTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCTGCCTTG 3330
Query 233 GCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCGCCTGGCCA---------TT--------------- 282
||.||||||||||.||||||||.|||..|||||||||||||||||||| ||
Sbjct 3331 GCCTCCCAAAGTGTTGGGATTACAGGCATGAGCCACTGCGCCTGGCCAGCTAGAGAGTTTTTAAAGCAGAGCTG 3404
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3405 AGCACACACTGGATGCGTTTGAATGTGTTTGTGTAGTTTGTTGTGAAATTGTTACATTTAGCAGGCAGATCCAG 3478
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3479 AAGCACTAGTGAACTGTCATCTTGGTGGGGTTGGCTTAAATTTAATTGACTGTTTAGATTCCATTTCTTAATTG 3552
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3553 ATTGGCCAGTATGAAAAGATGCCAGTGCAAGTAACCATAGTATCAAAAAAGTTAAAAATTATTCAAAGCTATAG 3626
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3627 TTTATACATCAGGTACTGCCATTTACTGTAAACCACCTGCAAGAAAGTCAGGAACAACTAAATTCACAAGAACT 3700
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3701 GTCCTGCTAAGAAGTGTATTAAAGATTTCCATTTTGTTTTACTAATTGGGAACATCTTAATGTTTAATATTTAA 3774
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3775 ACTATTGGTATCATTTTTCTAATGTATAATTTGTATTACTGGGATCAAGTATGTACAGTGGTGATGCTAGTAGA 3848
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3849 AGTTTAAGCCTTGGAAATACCACTTTCATATTTTCAGATGTCATGGATTTAATGAGTAATTTATGTTTTTAAAA 3922
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3923 TTCAGAATAGTTAATCTCTGATCTAAAACCATCAATCTATGTTTTTTACGGTAATCATGTAAATATTTCAGTAA 3996
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3997 TATAAACTGTTTGAAAAGGCTGCTGCAGGTAAACTCTATACTAGGATCTTGGCCAAATAATTTACAATTCACAG 4070
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4071 AATATTTTATTTAAGGTGGTGCTTTTTTTTTTTGTCCTTAAAACTTGATTTTTCTTAACTTTATTCATGATGCC 4144
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4145 AAAGTAAATGAGGAAAAAAACTCAAAACCAGTTGAGTATCATTGCAGACAAAACTACCAGTAGTCCATATTGTT 4218
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4219 TAATATTAAGTTGAATAAAATAAATTTTATTTCAGTCAGAGCCTAAATCACATTTTGATTGTCTGAATTTTTGA 4292
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4293 TACTATTTTTAAAATCATGCTAGTGGCGGCTGGGCGTGGTAGCTCACGCCTGTAATCCCAGCATTTTGGGAGGC 4366
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4367 CGAAGTGGGTGGATCACGAGGTCGGGAGTTCGAGACCAGCTTGGCCAAAATGGTGAAACCCCATCTGTACTAAA 4440
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4441 AACTACAAAAATTAGCTGGGCGCGGTGGCAGGTGCCTGTAATCCCAGCTACCTGGGAGTCTGAGGCAGGAGAAT 4514
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4515 TGCTTGAACCCTGGCGACAGAGGATGCAGTGAGCCAAGATGGTGCCACTGTACTCCAGACTGGGCGACAGAGTG 4588
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4589 AGACTCTGTCTCAAAAAAAAAAAAAAAATCATGCTAGTGCCAAGAGCTACTAAATTCTTAAAACCGGCCCATTG 4662
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4663 GACCTGTACAGATAAAAAATAGATTCAGTGCATAATCAAAATATGATAATTTTAAAATCTTAAGTAGAAAAATA 4736
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4737 AATCTTGATGTTTTAAATTCTTACGAGGATTCAATAGTTAATATTGATGATCTCCCGGCTGGGTGCAGTGGCTC 4810
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4811 ACGCCTGTAATCCCAGCAGTTCTGGAGGCTGAGGTGGGCGAATCACTTCAGGCCAGGAGTTCAAGACCAGTCTG 4884
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4885 GGCAACATGGTGAAACCTCGTTTCTACTAAAAATACAAAAATTAGCCGGGCGTGGTTGCACACACTTGTAATCC 4958
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4959 CAGCTACTCAGGAGGCTAAGAATCGCATGAGCCTAGGAGGCAGAGGTTGCAGAGTGCCAAGGGCTCACCACTGC 5032
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5033 ATTCCAGCCTGCCCAACAGAGTGAGACACTGTTTCTGAAAAAAAAAAATATATATATATATATATATATGTGTG 5106
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5107 TATATATATATGTATATATATATGACTTCCTATTAAAAACTTTATCCCAGTCGGGGGCAGTGGCTCACGCCTGT 5180
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5181 AATCCCAACACTTTGGGAGGCTGAGGCAGGTGGATCACCTGAAGTCCGGAGTTTGAGACCAGCCTGGCCAACAT 5254
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5255 GGTGAAACCCCATCTCTACTAAAAATACAAAACTTAAGCCAGGTATGGTGGCGGGCACCTGTAATCCCAGTTAC 5328
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5329 TTGGGAGGCTGAGGCAGGAGAATCGTTTAAACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATCGTGCCATTGC 5402
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5403 ACTCTAGCCTGGGCAACAAGAGTAAAACTCCATCTTAAAGGTTTGTTTGTTTTTTTTTAATCCGGAAACGAAGA 5476
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5477 GGCGTTGGGCCGCTATTTTCTTTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTCTGAGACGGAGTCTAGCTC 5550
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5551 TGCTGCCCAGGCTGGAGTACAATGACACGATGTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCT 5624
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5625 CCTGCCTCAGCCTCCCAAGTACCTGGGATTACAGGCACCTGCCACTACACCTGGCGAATATTTGTTTTTTTTAG 5698
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5699 TAGAGACGGGCTTTTACCATGTTAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCC 5772
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5773 AAAGTGCTGGGATTACAGGTGCAGGCCACCACACCCGGCCTTGGGCCACTGTTTTCAAAGTGAATTGTTTGTTG 5846
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5847 TATCGAGTCCTTAAGTATGGATATATATGTGACCCTAATTAAGAACTACCAGATTGGATCAACTAATCATGTCA 5920
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5921 GCAATGTAAATAACTTTATTTTTCATATTCAAAATAAAAACTTTCTTTTATTTCTGGCCCCTTTATAACCAGCA 5994
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5995 TCTTTTTGCTTTAAAAAATGACCTGGCTTTGTATTTTTTTAGTCTTAAACATAATAAAAATATTTTTGTTCTAA 6068
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6069 TTTGCTTTCATGAGTGAAGATTATTGACATCGTTGGTAAATTCTAGAATTTTGATTTTGTTTTTTAATTTGAAG 6142
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6143 AAAATCTTTGCTATTATTATTTTTTCCAAGTGGTCTGGCATTTTAAGAATTAGTGCTAATAACGTAACTTCTAA 6216
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6217 ATTTGTCGTAATTGGCATGTTTAATAGCATATCAAAAAACATTTTAAGCCTGTGGATTCATAGACAAAGCAATG 6290
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6291 AGAAACATTAGTAAAATATAAATGGATATTCCTGATGCATTTAGGAAGCTCTCAATTGTCTCTTGCATAGTTCA 6364
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6365 AGGAATGTTTTCTGAATTTTTTTAATGCTTTTTTTTTTTTTGAAAGAGGAAAACATACATTTTTAAATGTGATT 6438
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6439 ATCTAATTTTTACAACACTGGGCTATTAGGAATAACTTTTTAAAAATTACTGTTCTGTATAAATATTTGAAATT 6512
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6513 CAAGTACAGAAAATATCTGAAACAAAAAGCATTGTTGTTTGGCCATGATACAAGTGCACTGTGGCAGTGCCGCT 6586
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6587 TGCTCAGGACCCAGCCCTGCAGCCCTTCTGTGTGTGCTCCCTCGTTAAGTTCATTTGCTGTTATTACACACACA 6660
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6661 GGCCTTCCTGTCTGGTCGTTAGAAAAGCCGGGCTTCCAAAGCACTGTTGAACACAGGATTCTGTTGTTAGTGTG 6734
Query 283 ----------------------------------------------------------------- 282
Sbjct 6735 GATGTTCAATGAGTTGTATTTTAAATATCAAAGATTATTAAATAAAGATAATGTTTGCTTTTCTA 6799
