Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_13781
Subject:
NR_136509.2
Aligned Length:
4510
Identities:
242
Gaps:
4237

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTTTTGATGGGTTCCGGGTCCCAAAAGGGTTCGAGGCCTCTTGCCTTCGCTCCGTAGGAGGGAGTTCTCTTCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGCCCTGGGGGCCGCAGGACTGTCCAGGAATACAGTTTCCAGGTGAGATCTTACTTGAAACACCGGTAGTTCTA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCACAGCTAAAATGGCATCTACTTGGGCTATCCAGGCCCACATGGACCAGGATGAACCTTTGGAAGTAAAGATA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAGGAAGAGAAATATACCACCAGACAGGATTGGGACCTGCGTAAAAACAACACCCATAGCAGAGAGGTCTTCCG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCAGTACTTCAGACAGTTCTGCTACCAGGAGACATCTGGTCCCCGTGAGGCTTTGAGCCGACTCCGAGAACTTT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GCCATCAGTGGCTGAGGCCAGAGACCCACACCAAAGAACAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACCATCCTACCTGAGGAGCTCCAGGCCTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCTGGAGGATTTAGAGAGAGAACTGGATGAACCAGGAGAGCAGGTCTCAGTCCACACTGGGGAACAGGAAATGT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCTTGCAGGAGACGGTACGTCTACGAAAAGAAGGAGAACCCAGTATGTCCCTCCAGTCCATGAAAGCCCAGCCA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AAGTATGAATCTCCAGAACTTGAATCCCAACAGGAGCAAGTTTTAGATGTTGAGACTGGAAATGAGTATGGGAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TTTAAAGCAAGAAGTTTCTGAAGAAATGGAACCACATGGGAAGACATCCAGTAAATTTGAAAATGATATGTCCA  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGTCTGCTAGGTGTGGAGAAACTCGTGAACCTGAAGAAATAACAGAAGAGCCCTCTGCTTGCTCCAGAGAAGAT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AAACAACCTACCTGTGATGAAAATGGAGTAAGCCTGACTGAGAACTCTGACCATACTGAACATCAGAGAATCTG  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  TCCAGGAGAAGAATCTTACGGATGTGATGACTGTGGAAAAGCTTTTAGTCAGCACTCACACCTCATAGAACATC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AGAGGATCCATACTGGAGATAGACCCTACAAATGCGAAGAATGTGGAAAAGCTTTCCGTGGGAGAACTGTGCTT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ATTCGACACAAAATAATACACACTGGAGAGAAACCGTATAAGTGTAATGAATGTGGCAAAGCCTTTGGCCGGTG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GTCAGCTCTTAACCAACATCAGAGACTTCACACAGGAGAAAAACACTATCACTGTAATGACTGTGGCAAAGCCT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TTAGTCAGAAAGCAGGCCTCTTTCACCATATCAAGATCCACACAAGAGACAAACCTTATCAGTGCACTCAGTGT  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AATAAAAGTTTTAGTCGGCGTTCCATACTTACTCAGCATCAAGGAGTTCATACCGGCGCCAAGCCGTATGAGTG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CAACGAGTGTGGAAAAGCCTTTGTTTATAACTCATCCCTTGTTTCCCATCAGGAAATCCACCACAAAGAAAAAT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GCTATCAGTGTAAGGAATGTGGGAAATCCTTCAGTCAGAGTGGCCTTATTCAGCATCAGAGAATTCACACTGGG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GAAAAACCCTACAAATGTGACGTATGTGAAAAAGCCTTTATTCAAAGGACAAGTCTTACAGAACATCAGCGAAT  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCACACTGGAGAAAGACCCTATAAATGTGATAAGTGTGGGAAGGCGTTTACTCAAAGATCAGTCCTCACGGAAC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  ATCAGAGAATCCACACTGGAGAGAGGCCCTACAAGTGTGATGAGTGTGGGAATGCCTTCCGAGGAATCACCAGC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  CTCATTCAGCATCAGAGAATCCACACTGGGGAGAAGCCCTACCAATGTGATGAGTGTGGAAAAGCCTTCAGACA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GAGGTCAGATCTTAGTAAACACCAGAGAATCCATAATAGACGTGGTACCTATGTATGTAAAGAGTGTGGGAAAT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CATTCAGGCAGAACTCAGCTCTTACTCAACATCAGACTATCCACAAAGGAGAAAAATCTGTTTCTGTGTGATGA  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  CTACAGGGAAGTTATCTCACAGAGTTCAGGCCGGAAGAAGACCAGCTACAAGGAAATACTTCTGAAAAATCACT  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CTGAACCCCAAGCTGGAGTGAATCTTCTCCTGAGCTCTCTCATTCCAGAATGGCAATCTTGTTTCAGGAGAGAT  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  CTCTAATAGTGACTGATGGTAAAGGAAGAAGGCTGTGCCTAGAACAAAGAATCAGGCTGGCAAAGAAATCACAG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  GTCTTTCCTCAAACTTTAAATTGCTACTCTCTGGAGATAGCTACCTGGACTTTACAGAGCTGTCAGAAGACTTG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GGAAGGTTTGCCAGCATTGGAAAAAGCCACTTGGACTTCACAGAGCTGTCAGAAGACTTAGGAAGCTTTGCCAG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TAGTTCCTGAGACCAGAAATACATATTATGAAGCAGGTGCTGGAACAGGCCCTGGCCCCTACTTGTGAAGCTGC  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  AGATATAGATGGTGTTACTGAGAAGGAAACTAAGGACTTGGCTCCAAAACAAAACAAAACAAAATCTGGAGATG  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  CTGAATTTTGTTGGGGGGAATGTCTGTAGAACTGCAACATCAATGCAGTAAGTGTAGTAAAAGCTTTAGTTTAT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GGTGAGTCATTACTCAGCATCATGGAGTCCACGATGAAGAGAATCTCTTTTCAATCTGTGCAATCAACAAGTTT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  TTGAAAGGCTTTTGTTTATAGTGGAACCCTCTTTTCCCCCTAGAAGAACCACCACAAGGAAAAATGCTGTCACC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  ATAAGGAATGTGGGAAAGTTTTCAGCCACATGGCCTTATTTGACTTCAAAGAATCCACATGAGAGAGAGACTGC  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ATAAATGTAATAACTGAGGAGGCCTTTGTTCAGCAAAGAAACCTTATACAAACTCGTATAAAGAATGTAGGAAG  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  ACCTTCACCCAGAAGCCAGGACTGACTGTGCACCAGAGAATCTGCACAATAAACATGATGAATGTGGAGATGCT  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  TGCTTCAGCATTGGAGAATTCACAGTAAAGGGAAACCCTGCCAGTGTGATGAGTACGGAAAAGTCTTCAGAGGT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  TGGAACTTGGGAAAAATCAGTGAGTGAATTCATATTAGAGAGGCTCTTATAAATGAGAGGATTGTGGAAACTTG  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TATAGACAGAGATCAGACCTCAACAAGGGAGCCTCCACAGTATTGAAAAGTTAATATAATTAATGTAAGTGGGC  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  AAGTTGTATGGGGAATGGGTAGTCTAAATTGCTCATTTTAGCCAGTAAAAACATTAAATTAGTTTCTTAGATCA  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  AGAAAAGGAAATGTTAGAAGTTATTTTTCCCTTCCAGAGGGGTCTATATGTGTAAGCAACCAGGACTTTTGAAA  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  TAAGTTGCATCTCTGGATTTGTGATCTGTCTCCTGGATGATTATCTCTGTTTTGGGAGACAGGTATTTTTTCTT  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  CATGCCTGCTCTAGTCTCATCTCATATCTTTAATTCATTCAGCAAGTATACACAATAGTATTATCGTCTACTGT  3478

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3479  TTGTTGTAAATATATATATATTATTTTCTTTTTGGTCTGAGTAGGCTTGTATTGGTACCCTAGGACATAAAAAT  3552

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3553  CACATATATCATGTTTCAGTAAATGCAGTGAAAGGAACTATATTATTAAATTGCTGGGAATTTCTGTAAATTTG  3626

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3627  AGACTACCTTTATATTCTCCAACACAAGACCGTGTAGGTGTCCCTTCAGAGAGTATATTTTTCTAGCTTGGCTT  3700

Query    1  ------------------------ATGGAGTCTTGCT-CTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCC  49
                                    ||||||||||||| |||||.|||||||||||||||||||||.|||||||.
Sbjct 3701  CTTTATTTTCTTTATTTTTTTGAGATGGAGTCTTGCTCCTGTCGCCCAGGCTGGAGTGCAATGGCACGATCTCG  3774

Query   50  ACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGG  123
            .||||||||||||||.||.|.|||||||||||.||||||||||||||||.||||.|||||||||||||||||||
Sbjct 3775  GCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGTCTCAGTCTCCCGAGTAGCTGGGATTACAGG  3848

Query  124  ----TGCCCACCA---CCACAGCTGGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGCCAG  190
                || ||||||   |||      |||||||||||||||||||||||||||.||||||.|||||.||||||||
Sbjct 3849  CACTTG-CCACCATTCCCA------GCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAG  3915

Query  191  ACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAG  264
            .|||||||||||||||||||||  .|||.||.|||..|||||||.|||||||||.|.|||||||.|||..||||
Sbjct 3916  GCTGGTCTCGAACTCCTGACCT--TGTGATCTGCCCACCTTGGCCTCCCAAAGTTCAGGGATTACAGGCATGAG  3987

Query  265  CCACTGCGCCTGGCCATT--------------------------------------------------------  282
            ||||...|||.|||..||                                                        
Sbjct 3988  CCACCATGCCCGGCTGTTTTTTTAAGATAGAAAAATATACTTCATGTATAGCCTATTGACAGATAATGACTGAT  4061

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4062  ATTTTTTCTTATAGATAACACATAATAAACATTGTGAAGACTAATAAGTAACTTGCTTATTCTTTTCAGTTCTA  4135

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4136  AAACCTGTAGGAAAGAATCTTTAGAAGCTGTCAACAAGTTGATAATGTAGCCCAATCTCTACCCATGATAGGAG  4209

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4210  AGTAAGGCTTATATATTTTATAGTAGGGCACTAAATACAGGAACCATGTATTTAAAAACTTTTTAGTGATTATC  4283

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4284  TCAGAATTCTAGGTGTCCCTCTGCTGTACATCCCTAAATTTTTTGCATAGGTATTATTAATAAATTCATTATTT  4357

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4358  TCAAAGATGGACTGTGTTCTGTAAAAAGCTTTTCCAGTATCTGCAAATCACACAGTTTTTTTTAACTCTATTAC  4431

Query  283  ----------------------------------------------------------------------  282
                                                                                  
Sbjct 4432  TATTATATAAAATGATTTCTTAATATTGAACCAACCTTGCATTCCTAGAATAAACCTCACTTAGCCATGA  4501

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