Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- XR_001736990.1
- Aligned Length:
- 4498
- Identities:
- 234
- Gaps:
- 4231
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGAGGAGCGGGGCCGGGAGCTGCGAGGAGCCCCCCAGACGTCGCCGAGCGCGAGGGCGGGCGTGCTCGGAGTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTCGCTCGTCAGCCGCCGCCCCTCAGTCTCCGCACTTGCAGGTCCCCTCCCTCTCCGCCGGGACGCGGGAGAGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCGGCTCGCGGCGGGGGCGGCCAATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CACCTCTGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTGCAGATCAGTTGGCCTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATTTCCTCAGTGGAAATCTACTCACTATGATGTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAACGTGATAAGAAGCACCTGGATGAGACATTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TTCATAATAGGTGCTCATGGCTGTGAAGTGCCTGTGGAAGACAGGGAGGATCCTTATTCCTGTAAACTACTCAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CATCACAAATCCAGTTTTGAATCAGGAAATTGAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGGATCGAGTTGTCAGCGTGAGTTTCCGAGTTCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGAT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCCAATGATGTGGGTTTCCAGAGGAACATCACTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGCTCGCTTCAGTCCTCCAAGCTGTGGTGTGCAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TACCAGAGAGCTTTGAAGGTACAATCGTGTGGGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AAAGTGACAGTGAATGATGGAGGGGGAGTTCTCAGAGTCATTACAGCTGGGGAGGGTGCATTGCCTCATGAATT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTTGGAAGGTGTGGAGGGAGTTGCAGGTGGTTTTATATATACTATTCAGGGACTGTGGAAACAACGAGCTTCAA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTTGTTGCTGAAGACAGATGATGACTGTTACATAGACCTCGAAGCTGTATTTAATAGGATTGTCCAAAAGAATC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TGGATGGGCCTAATTTTTGGTGGGGAAATTTCAGACTGAATTGGGCAGTTGACCGAACCGGAAAGTGGCAGGAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTGGAGTACCCGAGCCCCGCTTACCCTGCCTTTGCATGTGGGTCAGGATATGTGATCTCCAAGGACATCGTCAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GTGGCTGGCAAGCAACTCGGGGAGGTTAAAGACCTATCAGGGTGAAGATGTAAGCATGGGCATCTGGATGGCTG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CCATAGGACCTAAAAGATACCAGGACAGTCTGTGGCTGTGTGAGAAGACCTGTGAGACAGGAATGCTGTCTTCT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCTCAGTATTCTCCGTGGGAACTGACGGAACTGTGGAAACTGAAGGAACGGTGCGGTGATCCTTGTCGATGTCA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AGCAAGATAACAGGGACTTGAATTAGCAGAGTCTAAAATCAGGGCAGGCAAACGATAATCTGAGTGCAAGTCTG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGGAGTCCCAGGGTTTAGCAGTAGACTGTATGGTCTTTCAAGAGAGTTCCAGACTGGCACTTTCACCCAGAACC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AATGCGGTGTTTCTTAATGTTTGCACAAATTTCCTTAAAAATCAACTTGTACTGTAGCATAAGAAAAGTTTTTA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTTATCTATTGGAAGATTATCAGAAAAATACCAAGTTATTTTATAAAAGAAAAAATATTTCTAAATCCTGATGC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ATTGTGGCTAATTAGTAATTCACCATTACCTATAGTTTTTGGTTAAAACTTGGCCTAGTTCAGAAATCTGTAGT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGTAACTGAGAGTTTGAATTTCAACCTGGATTGCAGGATAGCTCTGTAGAGCTAATTAGGATAATTATCAGACA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAAAGGAACTCACAGGAATGCTGTGTGATCATGTGATCACATATTTGAGCAGTGGTCACTTATACCAAAGTTTG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GGGTTTCTGGAAATAATGTCAGATTTTGTGGATCTCTGAAGTGGGCAACTTGAACTAACTTGAAGAGGAACCAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TATGATTCTCAGTTCTGAACCTTGGTTTTAAAGAAGTTCATTTATATGGTAGACTAATACCCAAATTTTCTTTC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGCCATCTAACATAAATCCTGAAGGTCACAGTTTAGTACTCATAGTTTTTAAATGCTAAAGTTGTGTGAGTATG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AATAAAAGCAAATACCTCTCAGGGTTTTAGTGCCATCGGGAAGGATATTTCTAAATTTTGTTGACATTTTGAAA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GAATTAGTTTTGCTTTCCTCCTATCATTGCCTAATGTTTACCTAATATGAGTACATTTCAATCAAAGCTGGTTA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TCACAGAAGAAGATATACTCAGCTTAGGTATAATTGTAGGGAAAAGCATGTGATTAATTTAAGTACTCTTAGAA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 ATAGTGCAACTGAGAAGACAGATAATAGCATATTGTTATACATAGTAGAGGATGTCTCCCCAAGTTTAAGGGAC 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ATTTCCCAAAATGACCAACCAAATCATTTCTAGTAACCCTTTAAAATAGTAGTTTCAATAGAGAATTCCATTAA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AACTAGTCTTATGACAGATATTAACTGTGTTCAGATTTTATTAGGCTAGCTAGTTTCTTTCTATTTAATATTTA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AATCTTATCATGAAATGCAGTGATGAGCTGTAAAAATAAATATGAAATAAGATCAGAAAATCATTAGTAGGTTC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AAAGCCTTTATTATTGCTATTATGTATAAGCCTAGAAATGGTCACTTCCCAACAAAAAATACATCCCTTGTTAT 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ACTTAGGACAAGTTGTAAACCCCCTTTGTTTTGACAGTAGAATTGTTCCAGTGAATCATTTATTTCCGGTGAAC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 CCCAGACACGATAAGCAGTGTGGTCTTTAAATTTTATTAGTTGGTTGTCACCATCGCACTAATAGACAATCTCC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 ATTTTCCACAGAATAAAACTGTAATGACTTTAGGTCATTTTCCAGCTCGATTTCTCTGCCCGGCTTCTAAAATT 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 AGAACGAAGGTGGGGAAGGATGTGATTAAGACAGATCCGATAAAGCATGCTACACATACTCTTCCCCCACCCCG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TCCCCAGGCAGTAGCTTACCCTTAAAATCAAACAAACAGACCCATGGTCTCCATTTAGAATCAAACTGTTGCTA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TCTAGAGACAGTTTAATGTCATAATACGAGGACTAAGCTTGACTTTGACTTTGTATTTTGCTGGGCAACTTACT 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TTGGGACTTTCATAGGACAACAGAAGGTCTGACACAGGAACTTTGAGAAGACGTGACAGCAATCCCTTCACCTT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TTGAATTGTCATGGAGCCTATCAAAAGACAAGAAAAGTCCATTCGTTCTCTCAAATGACAGTTACCTGTAAAAC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TAGCTCATGTGATGAGACCACAGTATCATTGCAATGATAGCTGTATCTGTCTTTTTTTTTTTTTTTTTTTTGAG 3478
Query 1 ------------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCA 50
| ||||||||||||||.||||||||||||||||||||.|..|||||..
Sbjct 3479 ACTGACTTACTTACTTACTTAAGTA---AGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAATGGTGTAATCTCGG 3549
Query 51 CTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGT 124
||||||||||||||.||.|.||.|||||||.|.|||||||||.||||||||||||||||||| |||
Sbjct 3550 CTCACTGCAACCTCCGCTTCCCGGGTTCAAACAATTCTCCTGCCTCAGCCTCCTGAGTAGCT---------GGT 3614
Query 125 GCCCACCACCACAGCTGGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGCCAGACTGGTCT 198
|||||.|||||||.|..|||||.|||||||||||||||||||||.||||||.|||||.||||||||.|||||||
Sbjct 3615 GCCCATCACCACACCCAGCTAACTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCT 3688
Query 199 CGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCG 272
.|||||||||||||| |||.||||||.|||.||||..||||||||||||||||||.|.|..|||||| |.|||
Sbjct 3689 TGAACTCCTGACCTC--GTGATCCGCCCGCCCTGGCCCCCCAAAGTGCTGGGATTACAAGCATGAGCC-CAGCG 3759
Query 273 CCTGGC---------CATT------------------------------------------------------- 282
|||||| ||||
Sbjct 3760 CCTGGCTGTATCTTTCATTTTACCCAAGTCACTTTACCCAAGTAAGTAATTAGGGGAAAGCCTGAGTCTTGTAC 3833
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3834 CACCTGTTCATTTGGGGAACTGTGGGAAACGGAGCCAACGGACCTAAGTGCCCTTTGACAGTGAGTTTCATACC 3907
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3908 ATTTCAGTAGTGTATTTCTTTCTTAATCTGAATAAACCAGAATGATACTCTCAGCACAGAAGAATAAAGGGAGC 3981
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3982 GAGTCATTAACGTTTTCTTTTTAAACCTTTATGATGACTTCCTTATGAATTACTGAACGAACACTGGAATGGGA 4055
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4056 CTCAGGTATCCTGAGGACATCTCTCAACTCTGGCCTTAGTTCCCCCTCTGTAAAATTAGGGTGCCAACTAAATG 4129
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4130 ATCTACAAGGTCCCTTCCAGCGCCGCCATTCTGTAATTACATCATGTGTAACTGTATTAAACATACACAAGTGA 4203
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4204 CTGCCAGGCATGGGAATGTAACTTCCGAGTAAATGCTTTGGTTTGTTCAGAATACACTATGAACTTCTTTCCAA 4277
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4278 AGACGGGTTGTGGTAAATAGTGGATATTTTGATTATAAGAAATAGAGTTTCCTTGAAGCTTTAGCTGGAGATAC 4351
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4352 AGCAATAGTGTGGTGTTCCTACAAATATCACAGTGTATTCAAACATATTTTTCTATCAAAAATCATTTTTGTAA 4425
Query 283 ---------------------------------------------------------- 282
Sbjct 4426 AAGCTGTGTGTTTTTATCCAACTTGTGATAATAAATGTTCTTTATTTTAGAATAAAAA 4483
